mRNA_M-pyrifera_M_contig92234.21351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92234.21351.1
Unique NamemRNA_M-pyrifera_M_contig92234.21351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92234.21351.1 vs. uniprot
Match: A0A2E7K748_9PLAN (CHAT domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K748_9PLAN)

HSP 1 Score: 492 bits (1266), Expect = 1.460e-158
Identity = 253/254 (99.61%), Postives = 253/254 (99.61%), Query Frame = 1 
Query:    1 RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAETATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAIVALLKAEGVLKEQRLTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVAQTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR 762
            RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAETATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAI ALLKAEGVLKEQRLTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVAQTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR
Sbjct:  471 RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAETATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAIEALLKAEGVLKEQRLTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVAQTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR 724
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BLAST of mRNA_M-pyrifera_M_contig92234.21351.1 vs. uniprot
Match: A0A3C0AFN6_9PLAN (CHAT domain-containing protein (Fragment) n=4 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AFN6_9PLAN)

HSP 1 Score: 417 bits (1073), Expect = 1.840e-132
Identity = 214/254 (84.25%), Postives = 227/254 (89.37%), Query Frame = 1 
Query:    1 RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAETATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAIVALLKAEGVLKEQRLTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVAQTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR 762
            RD KL  Y+ LLKPM  VLGDDHP YAELLIEIADW+EPAS QTLEQAETA G+YE+NSWHQT EYA ALRIVGRIRNTLR D+AI ALLKAEGVLK  RLTSGI+YLIT+NELLFYYRN  QLIEAIPYCE AE+LARQLL  DRGL AQTCNQVATIYETLGRTDEAL+NYLRAVN FDEL+ PP+R  LITLKNVAGLYR+QQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVL LTSMYQEQERY +AR
Sbjct:  462 RDVKLTHYKLLLKPMSTVLGDDHPTYAELLIEIADWTEPASAQTLEQAETAIGVYEQNSWHQTWEYAHALRIVGRIRNTLRHDNAIDALLKAEGVLKALRLTSGIEYLITMNELLFYYRNTGQLIEAIPYCEIAEKLARQLLNADRGLAAQTCNQVATIYETLGRTDEALQNYLRAVNIFDELASPPTRGHLITLKNVAGLYRKQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLTLTSMYQEQERYDEAR 715
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BLAST of mRNA_M-pyrifera_M_contig92234.21351.1 vs. uniprot
Match: A0A2E2C280_9PLAN (CHAT domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C280_9PLAN)

HSP 1 Score: 409 bits (1052), Expect = 3.620e-129
Identity = 211/254 (83.07%), Postives = 223/254 (87.80%), Query Frame = 1 
Query:    1 RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAETATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAIVALLKAEGVLKEQRLTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVAQTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR 762
            RD KL  Y+ LLKPM  VLGDDHP YAELLIEIADW+EPAS QTLEQAETA G+YE+NSWHQT EYA ALRIVG IRNTLR D+AI ALLKAEGVLK  RLTSGI+YLIT+NELLFYYRN  QLIEAIPYC  A  LARQLL  DRGL AQTCNQVATIYETLGRTDEAL+NYLRAVN FDEL+ PP+R  LITLKNVAGLYR+QQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVL LTSMYQEQERY +AR
Sbjct:  247 RDVKLTHYKLLLKPMSTVLGDDHPTYAELLIEIADWTEPASAQTLEQAETAIGVYEQNSWHQTWEYAHALRIVGXIRNTLRHDNAIDALLKAEGVLKALRLTSGIEYLITMNELLFYYRNTGQLIEAIPYCXXAXXLARQLLNADRGLAAQTCNQVATIYETLGRTDEALQNYLRAVNIFDELASPPTRXHLITLKNVAGLYRKQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLTLTSMYQEQERYDEAR 500
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BLAST of mRNA_M-pyrifera_M_contig92234.21351.1 vs. uniprot
Match: A0A355GG64_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355GG64_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 3.270e-35
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:  526 AVNFFDELSGPPSRAQLITLKNVAGLYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERYQQAR 762
            AVN FDEL+ PP+R  LITLKNVAGLYR+QQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVL LTSMYQEQERY +AR
Sbjct:    1 AVNIFDELASPPTRGHLITLKNVAGLYRKQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLTLTSMYQEQERYDEAR 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92234.21351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7K748_9PLAN1.460e-15899.61CHAT domain-containing protein n=5 Tax=Gimesia Tax... [more]
A0A3C0AFN6_9PLAN1.840e-13284.25CHAT domain-containing protein (Fragment) n=4 Tax=... [more]
A0A2E2C280_9PLAN3.620e-12983.07CHAT domain-containing protein n=2 Tax=Planctomyce... [more]
A0A355GG64_9PLAN3.270e-3587.34Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92234contigM-pyrifera_M_contig92234:8..769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.3430803-CDS-M-pyrifera_M_contig92234:7..7691622816835.3430803-CDS-M-pyrifera_M_contig92234:7..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92234 8..769 +
1692278206.571859-CDS-M-pyrifera_M_contig92234:7..7691692278206.571859-CDS-M-pyrifera_M_contig92234:7..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92234 8..769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92234.21351.1prot_M-pyrifera_M_contig92234.21351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92234 8..769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92234.21351.1

>prot_M-pyrifera_M_contig92234.21351.1 ID=prot_M-pyrifera_M_contig92234.21351.1|Name=mRNA_M-pyrifera_M_contig92234.21351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
RDAKLALYRSLLKPMRAVLGDDHPAYAELLIEIADWSEPASEQTLEQAET
ATGIYEKNSWHQTPEYARALRIVGRIRNTLRRDDAIVALLKAEGVLKEQR
LTSGIDYLITLNELLFYYRNHDQLIEAIPYCETAEELARQLLKVDRGLVA
QTCNQVATIYETLGRTDEALENYLRAVNFFDELSGPPSRAQLITLKNVAG
LYRRQQQYVSAEDFFRRFLKMVETPGLYDRGLQVDAVLGLTSMYQEQERY
QQAR
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mRNA from alignment at M-pyrifera_M_contig92234:8..769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92234.21351.1 ID=mRNA_M-pyrifera_M_contig92234.21351.1|Name=mRNA_M-pyrifera_M_contig92234.21351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig92234:8..769+ (Macrocystis pyrifera P11B4 male)
CGCGATGCCAAACTCGCGCTCTACAGATCACTTCTCAAGCCAATGCGTGC
GGTGCTGGGAGATGACCATCCGGCGTACGCAGAACTTCTCATCGAAATTG
CCGACTGGAGTGAGCCTGCTTCTGAACAGACATTGGAACAGGCAGAGACC
GCTACCGGGATTTACGAGAAGAATTCCTGGCACCAGACCCCGGAATATGC
TCGTGCCCTGCGAATCGTTGGTCGGATTCGAAATACACTCCGCCGAGATG
ACGCCATCGTGGCGCTGCTCAAAGCCGAAGGTGTCTTGAAAGAACAGCGT
CTCACCAGTGGTATCGATTATCTTATCACGTTAAACGAGCTTCTGTTCTA
CTACCGCAATCACGATCAGCTGATTGAAGCGATTCCTTATTGTGAAACTG
CAGAAGAGTTGGCGCGGCAGCTGCTGAAAGTCGATCGAGGTCTTGTCGCC
CAAACCTGTAACCAGGTTGCGACGATCTACGAAACACTGGGACGGACCGA
TGAGGCGCTTGAGAACTATTTGCGAGCAGTGAATTTTTTCGATGAACTTT
CAGGTCCACCAAGCCGCGCCCAACTGATCACATTGAAGAACGTCGCGGGA
CTTTATCGCAGGCAACAGCAATACGTGTCCGCGGAAGACTTCTTTCGGCG
ATTTCTGAAAATGGTCGAAACACCCGGTTTGTACGATCGGGGATTACAGG
TCGATGCTGTATTGGGCCTCACCTCCATGTACCAGGAACAGGAACGGTAC
CAGCAGGCACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92234:8..769+

>mRNA_M-pyrifera_M_contig92234.21351.1 ID=mRNA_M-pyrifera_M_contig92234.21351.1|Name=mRNA_M-pyrifera_M_contig92234.21351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig92234:8..769+ (Macrocystis pyrifera P11B4 male)
CGCGATGCCAAACTCGCGCTCTACAGATCACTTCTCAAGCCAATGCGTGC
GGTGCTGGGAGATGACCATCCGGCGTACGCAGAACTTCTCATCGAAATTG
CCGACTGGAGTGAGCCTGCTTCTGAACAGACATTGGAACAGGCAGAGACC
GCTACCGGGATTTACGAGAAGAATTCCTGGCACCAGACCCCGGAATATGC
TCGTGCCCTGCGAATCGTTGGTCGGATTCGAAATACACTCCGCCGAGATG
ACGCCATCGTGGCGCTGCTCAAAGCCGAAGGTGTCTTGAAAGAACAGCGT
CTCACCAGTGGTATCGATTATCTTATCACGTTAAACGAGCTTCTGTTCTA
CTACCGCAATCACGATCAGCTGATTGAAGCGATTCCTTATTGTGAAACTG
CAGAAGAGTTGGCGCGGCAGCTGCTGAAAGTCGATCGAGGTCTTGTCGCC
CAAACCTGTAACCAGGTTGCGACGATCTACGAAACACTGGGACGGACCGA
TGAGGCGCTTGAGAACTATTTGCGAGCAGTGAATTTTTTCGATGAACTTT
CAGGTCCACCAAGCCGCGCCCAACTGATCACATTGAAGAACGTCGCGGGA
CTTTATCGCAGGCAACAGCAATACGTGTCCGCGGAAGACTTCTTTCGGCG
ATTTCTGAAAATGGTCGAAACACCCGGTTTGTACGATCGGGGATTACAGG
TCGATGCTGTATTGGGCCTCACCTCCATGTACCAGGAACAGGAACGGTAC
CAGCAGGCACGCCGCGATGCCAAACTCGCGCTCTACAGATCACTTCTCAA
GCCAATGCGTGCGGTGCTGGGAGATGACCATCCGGCGTACGCAGAACTTC
TCATCGAAATTGCCGACTGGAGTGAGCCTGCTTCTGAACAGACATTGGAA
CAGGCAGAGACCGCTACCGGGATTTACGAGAAGAATTCCTGGCACCAGAC
CCCGGAATATGCTCGTGCCCTGCGAATCGTTGGTCGGATTCGAAATACAC
TCCGCCGAGATGACGCCATCGTGGCGCTGCTCAAAGCCGAAGGTGTCTTG
AAAGAACAGCGTCTCACCAGTGGTATCGATTATCTTATCACGTTAAACGA
GCTTCTGTTCTACTACCGCAATCACGATCAGCTGATTGAAGCGATTCCTT
ATTGTGAAACTGCAGAAGAGTTGGCGCGGCAGCTGCTGAAAGTCGATCGA
GGTCTTGTCGCCCAAACCTGTAACCAGGTTGCGACGATCTACGAAACACT
GGGACGGACCGATGAGGCGCTTGAGAACTATTTGCGAGCAGTGAATTTTT
TCGATGAACTTTCAGGTCCACCAAGCCGCGCCCAACTGATCACATTGAAG
AACGTCGCGGGACTTTATCGCAGGCAACAGCAATACGTGTCCGCGGAAGA
CTTCTTTCGGCGATTTCTGAAAATGGTCGAAACACCCGGTTTGTACGATC
GGGGATTACAGGTCGATGCTGTATTGGGCCTCACCTCCATGTACCAGGAA
CAGGAACGGTACCAGCAGGCACGC
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