mRNA_M-pyrifera_M_contig92222.21347.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92222.21347.1
Unique NamemRNA_M-pyrifera_M_contig92222.21347.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92222.21347.1 vs. uniprot
Match: A0A7S0DEK7_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DEK7_MICPS)

HSP 1 Score: 51.6 bits (122), Expect = 1.540e-5
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   88 SECTYLTPIPEDWFC-PFFYYEDGHCDCNCGAPDSDCDVAHDEVFGC 225
            SE    + +P+DW C P++Y +   CDC CGAPD DC++    ++GC
Sbjct:  718 SESEPFSSVPDDWICAPWYYDQADGCDCTCGAPDPDCELPGQYLYGC 764
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92222.21347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0DEK7_MICPS1.540e-542.55Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92222contigM-pyrifera_M_contig92222:6..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog5762.XP_002670031.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EUNG@1,2SWSM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.192722-CDS-M-pyrifera_M_contig92222:5..2781622816835.192722-CDS-M-pyrifera_M_contig92222:5..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92222 6..278 +
1692278206.4867635-CDS-M-pyrifera_M_contig92222:5..2781692278206.4867635-CDS-M-pyrifera_M_contig92222:5..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92222 6..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92222.21347.1prot_M-pyrifera_M_contig92222.21347.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92222 6..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92222.21347.1

>prot_M-pyrifera_M_contig92222.21347.1 ID=prot_M-pyrifera_M_contig92222.21347.1|Name=mRNA_M-pyrifera_M_contig92222.21347.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
CGAYDPDCDLSGSIVFNCTQGSDPVCTAESECTYLTPIPEDWFCPFFYYE
DGHCDCNCGAPDSDCDVAHDEVFGCGRCGDPATMACDTGLC
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mRNA from alignment at M-pyrifera_M_contig92222:6..278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92222.21347.1 ID=mRNA_M-pyrifera_M_contig92222.21347.1|Name=mRNA_M-pyrifera_M_contig92222.21347.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig92222:6..278+ (Macrocystis pyrifera P11B4 male)
TGCGGTGCCTATGATCCTGACTGCGATCTCTCCGGCTCGATTGTCTTCAA
CTGCACCCAGGGTTCCGACCCCGTGTGCACGGCTGAGTCCGAGTGCACTT
ACCTCACGCCCATCCCCGAGGACTGGTTCTGTCCCTTCTTCTACTACGAG
GACGGCCACTGCGACTGCAACTGCGGTGCTCCCGACTCTGACTGCGACGT
CGCCCACGACGAGGTCTTCGGCTGCGGCCGCTGCGGTGACCCCGCCACGA
TGGCCTGCGACACTGGCCTTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92222:6..278+

>mRNA_M-pyrifera_M_contig92222.21347.1 ID=mRNA_M-pyrifera_M_contig92222.21347.1|Name=mRNA_M-pyrifera_M_contig92222.21347.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig92222:6..278+ (Macrocystis pyrifera P11B4 male)
TGCGGTGCCTATGATCCTGACTGCGATCTCTCCGGCTCGATTGTCTTCAA
CTGCACCCAGGGTTCCGACCCCGTGTGCACGGCTGAGTCCGAGTGCACTT
ACCTCACGCCCATCCCCGAGGACTGGTTCTGTCCCTTCTTCTACTACGAG
GACGGCCACTGCGACTGCAACTGCGGTGCTCCCGACTCTGACTGCGACGT
CGCCCACGACGAGGTCTTCGGCTGCGGCCGCTGCGGTGACCCCGCCACGA
TGGCCTGCGACACTGGCCTTTGCTGCGGTGCCTATGATCCTGACTGCGAT
CTCTCCGGCTCGATTGTCTTCAACTGCACCCAGGGTTCCGACCCCGTGTG
CACGGCTGAGTCCGAGTGCACTTACCTCACGCCCATCCCCGAGGACTGGT
TCTGTCCCTTCTTCTACTACGAGGACGGCCACTGCGACTGCAACTGCGGT
GCTCCCGACTCTGACTGCGACGTCGCCCACGACGAGGTCTTCGGCTGCGG
CCGCTGCGGTGACCCCGCCACGATGGCCTGCGACACTGGCCTTTGC
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