mRNA_M-pyrifera_M_contig9212.21332.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9212.21332.1
Unique NamemRNA_M-pyrifera_M_contig9212.21332.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9212.21332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9212contigM-pyrifera_M_contig9212:5586..6353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.5200214-CDS-M-pyrifera_M_contig9212:5585..63531622816834.5200214-CDS-M-pyrifera_M_contig9212:5585..6353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9212 5586..6353 -
1692278206.0975873-CDS-M-pyrifera_M_contig9212:5585..63531692278206.0975873-CDS-M-pyrifera_M_contig9212:5585..6353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9212 5586..6353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9212.21332.1prot_M-pyrifera_M_contig9212.21332.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9212 5586..6353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9212.21332.1

>prot_M-pyrifera_M_contig9212.21332.1 ID=prot_M-pyrifera_M_contig9212.21332.1|Name=mRNA_M-pyrifera_M_contig9212.21332.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
LQNGELSAAARVFVPTHTSPAKPPMQPAGSTGTPGRRSRASSLGMAGLSS
AGTTPPRPPAAAHNSPALRPSPAKPGGSGLGLPLGDRVFGSSWGSMSSGG
GVGNANAVTSGADVAGLGGEGDTNAGGLWSTLGMDVGGTVPPNGQTIWAR
SSLLDSALSGSVGAGGDSMSLLLAPSTGSAVQATVDTPSMSSFASPLDLS
PWGGGGGGRGVGGAAAAAGDDFAGSLSSSLGELQLDVSENKMVRSKSGGQ
QQQQQR
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mRNA from alignment at M-pyrifera_M_contig9212:5586..6353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9212.21332.1 ID=mRNA_M-pyrifera_M_contig9212.21332.1|Name=mRNA_M-pyrifera_M_contig9212.21332.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig9212:5586..6353- (Macrocystis pyrifera P11B4 male)
TTGCAAAACGGCGAGCTCTCCGCCGCGGCACGCGTGTTCGTCCCCACTCA
CACCTCCCCAGCCAAGCCGCCGATGCAACCCGCGGGCAGCACCGGTACTC
CTGGACGACGCAGCCGAGCGAGTAGTTTGGGCATGGCAGGACTCTCGTCG
GCGGGCACAACGCCTCCCAGACCTCCGGCGGCGGCGCACAACAGTCCTGC
GTTGAGGCCCTCCCCGGCGAAGCCCGGTGGGTCGGGCCTTGGGCTCCCGC
TGGGCGATCGCGTTTTCGGTTCGTCCTGGGGAAGCATGAGCAGCGGTGGC
GGCGTGGGGAACGCCAACGCAGTCACTTCTGGGGCAGACGTGGCAGGCTT
GGGCGGAGAGGGAGACACCAACGCTGGCGGTCTTTGGAGTACTCTCGGGA
TGGATGTGGGGGGGACTGTACCTCCCAACGGACAGACCATCTGGGCCAGG
AGTTCTCTGTTAGATTCCGCGCTATCTGGGAGCGTCGGCGCCGGCGGAGA
CAGTATGTCTCTTCTCTTGGCGCCCTCCACGGGTTCTGCGGTCCAGGCAA
CGGTTGATACTCCCTCCATGTCGTCTTTCGCGTCCCCGCTCGACCTATCT
CCGTGGGGCGGCGGGGGTGGGGGGCGAGGGGTGGGCGGCGCGGCAGCCGC
CGCTGGCGACGACTTCGCCGGCAGTCTAAGTTCGTCACTAGGAGAGCTTC
AGTTGGATGTATCTGAAAACAAGATGGTGAGGAGTAAATCCGGCGGGCAG
CAGCAGCAACAACAGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9212:5586..6353-

>mRNA_M-pyrifera_M_contig9212.21332.1 ID=mRNA_M-pyrifera_M_contig9212.21332.1|Name=mRNA_M-pyrifera_M_contig9212.21332.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig9212:5586..6353- (Macrocystis pyrifera P11B4 male)
TTGCAAAACGGCGAGCTCTCCGCCGCGGCACGCGTGTTCGTCCCCACTCA
CACCTCCCCAGCCAAGCCGCCGATGCAACCCGCGGGCAGCACCGGTACTC
CTGGACGACGCAGCCGAGCGAGTAGTTTGGGCATGGCAGGACTCTCGTCG
GCGGGCACAACGCCTCCCAGACCTCCGGCGGCGGCGCACAACAGTCCTGC
GTTGAGGCCCTCCCCGGCGAAGCCCGGTGGGTCGGGCCTTGGGCTCCCGC
TGGGCGATCGCGTTTTCGGTTCGTCCTGGGGAAGCATGAGCAGCGGTGGC
GGCGTGGGGAACGCCAACGCAGTCACTTCTGGGGCAGACGTGGCAGGCTT
GGGCGGAGAGGGAGACACCAACGCTGGCGGTCTTTGGAGTACTCTCGGGA
TGGATGTGGGGGGGACTGTACCTCCCAACGGACAGACCATCTGGGCCAGG
AGTTCTCTGTTAGATTCCGCGCTATCTGGGAGCGTCGGCGCCGGCGGAGA
CAGTATGTCTCTTCTCTTGGCGCCCTCCACGGGTTCTGCGGTCCAGGCAA
CGGTTGATACTCCCTCCATGTCGTCTTTCGCGTCCCCGCTCGACCTATCT
CCGTGGGGCGGCGGGGGTGGGGGGCGAGGGGTGGGCGGCGCGGCAGCCGC
CGCTGGCGACGACTTCGCCGGCAGTCTAAGTTCGTCACTAGGAGAGCTTC
AGTTGGATGTATCTGAAAACAAGATGGTGAGGAGTAAATCCGGCGGGCAG
CAGCAGCAACAACAGCGGTTGCAAAACGGCGAGCTCTCCGCCGCGGCACG
CGTGTTCGTCCCCACTCACACCTCCCCAGCCAAGCCGCCGATGCAACCCG
CGGGCAGCACCGGTACTCCTGGACGACGCAGCCGAGCGAGTAGTTTGGGC
ATGGCAGGACTCTCGTCGGCGGGCACAACGCCTCCCAGACCTCCGGCGGC
GGCGCACAACAGTCCTGCGTTGAGGCCCTCCCCGGCGAAGCCCGGTGGGT
CGGGCCTTGGGCTCCCGCTGGGCGATCGCGTTTTCGGTTCGTCCTGGGGA
AGCATGAGCAGCGGTGGCGGCGTGGGGAACGCCAACGCAGTCACTTCTGG
GGCAGACGTGGCAGGCTTGGGCGGAGAGGGAGACACCAACGCTGGCGGTC
TTTGGAGTACTCTCGGGATGGATGTGGGGGGGACTGTACCTCCCAACGGA
CAGACCATCTGGGCCAGGAGTTCTCTGTTAGATTCCGCGCTATCTGGGAG
CGTCGGCGCCGGCGGAGACAGTATGTCTCTTCTCTTGGCGCCCTCCACGG
GTTCTGCGGTCCAGGCAACGGTTGATACTCCCTCCATGTCGTCTTTCGCG
TCCCCGCTCGACCTATCTCCGTGGGGCGGCGGGGGTGGGGGGCGAGGGGT
GGGCGGCGCGGCAGCCGCCGCTGGCGACGACTTCGCCGGCAGTCTAAGTT
CGTCACTAGGAGAGCTTCAGTTGGATGTATCTGAAAACAAGATGGTGAGG
AGTAAATCCGGCGGGCAGCAGCAGCAACAACAGCGG
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