mRNA_M-pyrifera_M_contig92103.21324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92103.21324.1
Unique NamemRNA_M-pyrifera_M_contig92103.21324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92103.21324.1 vs. uniprot
Match: A0A812LQD8_9DINO (CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812LQD8_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 7.910e-7
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   55 PILRRRYNLMRDEAEEARRAQARAESAAVDAEATLRHRVLSLELWKAGALARLKRLQAIAKDAVPAKLHAAVVSQVTSARSQLAKAVAEEASLRAELATQR 357
            P LRRR  +  ++      A+  AE AA +AEATLR R+L LELWK GA  RL+RL   A   VPA+LH   +  +   R +    VA+  + RA  A  R
Sbjct:  989 PALRRRLAVAEEQTRGQALAREAAEDAAAEAEATLRQRLLYLELWKRGAERRLQRLSDAATKWVPAELHRVALDSLAELRKRHHALVADVGATRAAAAADR 1089
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92103.21324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812LQD8_9DINO7.910e-741.58CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92103contigM-pyrifera_M_contig92103:1..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.1944191-CDS-M-pyrifera_M_contig92103:0..5551622816834.1944191-CDS-M-pyrifera_M_contig92103:0..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92103 1..555 -
1692278205.937905-CDS-M-pyrifera_M_contig92103:0..5551692278205.937905-CDS-M-pyrifera_M_contig92103:0..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92103 1..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92103.21324.1prot_M-pyrifera_M_contig92103.21324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92103 1..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92103.21324.1

>prot_M-pyrifera_M_contig92103.21324.1 ID=prot_M-pyrifera_M_contig92103.21324.1|Name=mRNA_M-pyrifera_M_contig92103.21324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
RSALRRITLSTATLEGENPILRRRYNLMRDEAEEARRAQARAESAAVDAE
ATLRHRVLSLELWKAGALARLKRLQAIAKDAVPAKLHAAVVSQVTSARSQ
LAKAVAEEASLRAELATQRAAALLRSDAEATAKLTSVELQAARASERAAR
AEIEELRAAISPSTTSSSTPSVAQLQGTIARLRGE
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mRNA from alignment at M-pyrifera_M_contig92103:1..555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92103.21324.1 ID=mRNA_M-pyrifera_M_contig92103.21324.1|Name=mRNA_M-pyrifera_M_contig92103.21324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig92103:1..555- (Macrocystis pyrifera P11B4 male)
CGATCTGCTCTGCGTCGAATTACATTGTCTACTGCAACGTTGGAAGGAGA
GAATCCAATTTTGCGTCGGAGGTATAATTTGATGCGTGACGAAGCAGAAG
AAGCAAGGAGAGCACAAGCACGTGCAGAAAGTGCTGCTGTTGATGCAGAA
GCCACACTTCGCCATCGTGTCTTGTCTTTGGAATTGTGGAAAGCGGGTGC
ACTTGCTCGTTTGAAACGATTGCAAGCGATTGCCAAAGATGCTGTTCCAG
CAAAGCTTCACGCGGCTGTTGTTTCTCAAGTCACATCTGCTCGTTCCCAA
CTTGCAAAGGCGGTTGCTGAAGAAGCATCTTTGCGTGCTGAATTGGCAAC
GCAGCGAGCTGCAGCATTGCTTCGATCTGACGCAGAAGCAACTGCAAAGT
TAACTTCGGTTGAGCTGCAAGCTGCACGAGCTTCAGAACGTGCAGCTCGT
GCAGAAATTGAGGAATTGCGTGCCGCAATCTCCCCATCCACCACGTCATC
TTCCACTCCATCTGTTGCTCAGTTGCAAGGTACCATTGCAAGATTGCGAG
GAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92103:1..555-

>mRNA_M-pyrifera_M_contig92103.21324.1 ID=mRNA_M-pyrifera_M_contig92103.21324.1|Name=mRNA_M-pyrifera_M_contig92103.21324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig92103:1..555- (Macrocystis pyrifera P11B4 male)
CGATCTGCTCTGCGTCGAATTACATTGTCTACTGCAACGTTGGAAGGAGA
GAATCCAATTTTGCGTCGGAGGTATAATTTGATGCGTGACGAAGCAGAAG
AAGCAAGGAGAGCACAAGCACGTGCAGAAAGTGCTGCTGTTGATGCAGAA
GCCACACTTCGCCATCGTGTCTTGTCTTTGGAATTGTGGAAAGCGGGTGC
ACTTGCTCGTTTGAAACGATTGCAAGCGATTGCCAAAGATGCTGTTCCAG
CAAAGCTTCACGCGGCTGTTGTTTCTCAAGTCACATCTGCTCGTTCCCAA
CTTGCAAAGGCGGTTGCTGAAGAAGCATCTTTGCGTGCTGAATTGGCAAC
GCAGCGAGCTGCAGCATTGCTTCGATCTGACGCAGAAGCAACTGCAAAGT
TAACTTCGGTTGAGCTGCAAGCTGCACGAGCTTCAGAACGTGCAGCTCGT
GCAGAAATTGAGGAATTGCGTGCCGCAATCTCCCCATCCACCACGTCATC
TTCCACTCCATCTGTTGCTCAGTTGCAAGGTACCATTGCAAGATTGCGAG
GAGAACGATCTGCTCTGCGTCGAATTACATTGTCTACTGCAACGTTGGAA
GGAGAGAATCCAATTTTGCGTCGGAGGTATAATTTGATGCGTGACGAAGC
AGAAGAAGCAAGGAGAGCACAAGCACGTGCAGAAAGTGCTGCTGTTGATG
CAGAAGCCACACTTCGCCATCGTGTCTTGTCTTTGGAATTGTGGAAAGCG
GGTGCACTTGCTCGTTTGAAACGATTGCAAGCGATTGCCAAAGATGCTGT
TCCAGCAAAGCTTCACGCGGCTGTTGTTTCTCAAGTCACATCTGCTCGTT
CCCAACTTGCAAAGGCGGTTGCTGAAGAAGCATCTTTGCGTGCTGAATTG
GCAACGCAGCGAGCTGCAGCATTGCTTCGATCTGACGCAGAAGCAACTGC
AAAGTTAACTTCGGTTGAGCTGCAAGCTGCACGAGCTTCAGAACGTGCAG
CTCGTGCAGAAATTGAGGAATTGCGTGCCGCAATCTCCCCATCCACCACG
TCATCTTCCACTCCATCTGTTGCTCAGTTGCAAGGTACCATTGCAAGATT
GCGAGGAGAA
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