mRNA_M-pyrifera_M_contig9204.21311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9204.21311.1
Unique NamemRNA_M-pyrifera_M_contig9204.21311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Match: D7FR74_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR74_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.170e-7
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 HPFCTRRAGFNIDGTKKAEYCKQHAKDGMVDVISRRCSHAFCTKQPSFNVQGK 159
            HP C  R  F +  TKK ++C+ HA +GMVDV ++ C    C K+P+F   GK
Sbjct:   11 HPNCNTRPAFGVPFTKKVQFCRPHALEGMVDVSTKSCGTHGCFKRPTFGFDGK 63
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BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Match: A0A7S0TTT3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTT3_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.260e-6
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 1 
Query:    1 HPFCTRRAGFNIDGTKKAEYCKQHAKDGMVDVISRRCSHAFCTKQPSFNVQGKTASHCKEH 183
            H  C +   F   G K   YC+QHA++G V++ +R C H  C+ Q +F   G  A+ CK H
Sbjct:    2 HDGCEKWPSFGPPGEKGGRYCRQHAREGDVNIKARMCVHEGCSSQATFGATGGKATACKLH 62
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BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 PFCTRRAGFNIDGTKKAEYCKQHAKDGMVDVISRRCSHAFCTKQPSFNVQGKT 162
            P CT    +     KKAE+CK+HAK GM++V++R+CSH  C K  SF   G +
Sbjct:  231 PECTTWPSYGAR-LKKAEFCKRHAKQGMINVVTRKCSHPGCIKSASFGKHGSS 282
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BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.790e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   46 KKAEYCKQHAKDGMVDVISRRCSHAFCTKQPSFNVQG 156
            K AE+C QH +  MV+V+S+RC H  CTKQPS+   G
Sbjct:   20 KNAEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAG 56
[Close]
BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Match: A0A6H5KW50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW50_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.550e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   10 CTRRAGFNIDGTKKAEYCKQHAKDGMVDVISRRCSH 117
            C++   F + GT+ AEYC  HAKDGM++VIS+RC H
Sbjct:    9 CSKVGSFGVQGTRTAEYCATHAKDGMLNVISKRCDH 44
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9204.21311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FR74_ECTSI7.170e-743.40EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7S0TTT3_HEMAN1.260e-637.70Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6H5J913_9PHAE5.850e-645.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5N3_9PHAE1.790e-554.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW50_9PHAE3.550e-555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9204contigM-pyrifera_M_contig9204:8097..8999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog2880.D8LFX5
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.5501006-CDS-M-pyrifera_M_contig9204:8096..84681622816833.5501006-CDS-M-pyrifera_M_contig9204:8096..8468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9204 8097..8468 -
1692278205.5151548-CDS-M-pyrifera_M_contig9204:8096..84681692278205.5151548-CDS-M-pyrifera_M_contig9204:8096..8468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9204 8097..8468 -
1622816833.5633187-CDS-M-pyrifera_M_contig9204:8801..89991622816833.5633187-CDS-M-pyrifera_M_contig9204:8801..8999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9204 8802..8999 -
1692278205.5280378-CDS-M-pyrifera_M_contig9204:8801..89991692278205.5280378-CDS-M-pyrifera_M_contig9204:8801..8999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9204 8802..8999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9204.21311.1prot_M-pyrifera_M_contig9204.21311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9204 8097..8999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9204.21311.1

>prot_M-pyrifera_M_contig9204.21311.1 ID=prot_M-pyrifera_M_contig9204.21311.1|Name=mRNA_M-pyrifera_M_contig9204.21311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
HPFCTRRAGFNIDGTKKAEYCKQHAKDGMVDVISRRCSHAFCTKQPSFNV
QGKTASHCKEHAEDGMDGMVDVISRRCSHAFCTKQPSFNVQGKTASHCKQ
HAEDGMVDVRSKRCLHDACTKIPSFNIEGSKTASYCKHHAEDGMVYVLGR
RCSHGDCTTIAKFNTEGCKRGAYCKKHATHRMVNVVSRRC
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mRNA from alignment at M-pyrifera_M_contig9204:8097..8999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9204.21311.1 ID=mRNA_M-pyrifera_M_contig9204.21311.1|Name=mRNA_M-pyrifera_M_contig9204.21311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=903bp|location=Sequence derived from alignment at M-pyrifera_M_contig9204:8097..8999- (Macrocystis pyrifera P11B4 male)
CATCCCTTCTGCACGAGGCGAGCGGGCTTTAACATCGACGGCACCAAGAA
AGCGGAGTATTGCAAGCAGCACGCTAAGGACGGCATGGTCGATGTCATCA
GCAGGCGTTGCTCACATGCTTTCTGCACGAAGCAGCCGAGCTTCAATGTC
CAGGGCAAGACAGCGTCGCACTGCAAGGAACACGCTGAGGACGGCATGGT
AGACGTCCGCAGCAAGCGTTGCTTGCACGACGCCTGCACGAAGATTCCTA
GCTTCAATACCGAGGGTAGCCAGACCCCAGCGTACTGCAAGCAACATGCC
GAGGATGGCATGGTGAACGTCCTCAGCAAGCGTCGTTCTTATGACTCCTG
CACTACAAGACCGACCTTCAATGCTGAGGACAGCAAGACGGCGGAGTACT
GCAAGCAACGTCCTCGAGAGAAAAGGGCAAACATCACCAATAAGCATTGC
GCACATCCCTTCTGCACGAGGCGAGCGGGCTTTAACATCGACGGCACCAA
GAAAGCGGAGTATTGCAAGCAGCACGCTAAGGACGGCATGGTCGATGTCA
TCAGCAGGCGTTGCTCACATGCTTTCTGCACGAAGCAGCCGAGCTTCAAT
GTCCAGGGCAAGACAGCATCACACTGCAAGCAACACGCTGAGGACGGCAT
GGTAGACGTCCGCAGCAAGCGTTGCTTGCACGACGCCTGCACGAAGATTC
CTAGCTTCAATATCGAGGGCAGCAAGACAGCATCGTACTGCAAACACCAC
GCTGAGGACGGCATGGTGTATGTCCTTGGGAGGCGTTGCTCTCACGGTGA
TTGCACGACGATTGCGAAGTTCAATACTGAGGGCTGCAAGCGGGGGGCGT
ACTGCAAGAAACACGCTACGCACAGAATGGTGAATGTCGTCAGTAGGCGT
TGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9204:8097..8999-

>mRNA_M-pyrifera_M_contig9204.21311.1 ID=mRNA_M-pyrifera_M_contig9204.21311.1|Name=mRNA_M-pyrifera_M_contig9204.21311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig9204:8097..8999- (Macrocystis pyrifera P11B4 male)
CATCCCTTCTGCACGAGGCGAGCGGGCTTTAACATCGACGGCACCAAGAA
AGCGGAGTATTGCAAGCAGCACGCTAAGGACGGCATGGTCGATGTCATCA
GCAGGCGTTGCTCACATGCTTTCTGCACGAAGCAGCCGAGCTTCAATGTC
CAGGGCAAGACAGCGTCGCACTGCAAGGAACACGCTGAGGACGGCATGCA
TCCCTTCTGCACGAGGCGAGCGGGCTTTAACATCGACGGCACCAAGAAAG
CGGAGTATTGCAAGCAGCACGCTAAGGACGGCATGGTCGATGTCATCAGC
AGGCGTTGCTCACATGCTTTCTGCACGAAGCAGCCGAGCTTCAATGTCCA
GGGCAAGACAGCGTCGCACTGCAAGGAACACGCTGAGGACGGCATGGACG
GCATGGTCGATGTCATCAGCAGGCGTTGCTCACATGCTTTCTGCACGAAG
CAGCCGAGCTTCAATGTCCAGGGCAAGACAGCATCACACTGCAAGCAACA
CGCTGAGGACGGCATGGTAGACGTCCGCAGCAAGCGTTGCTTGCACGACG
CCTGCACGAAGATTCCTAGCTTCAATATCGAGGGCAGCAAGACAGCATCG
TACTGCAAACACCACGCTGAGGACGGCATGGTGTATGTCCTTGGGAGGCG
TTGCTCTCACGGTGATTGCACGACGATTGCGAAGTTCAATACTGAGGGCT
GCAAGCGGGGGGCGTACTGCAAGAAACACGCTACGCACAGAATGGTGAAT
GTCGTCAGTAGGCGTTGCGACGGCATGGTCGATGTCATCAGCAGGCGTTG
CTCACATGCTTTCTGCACGAAGCAGCCGAGCTTCAATGTCCAGGGCAAGA
CAGCATCACACTGCAAGCAACACGCTGAGGACGGCATGGTAGACGTCCGC
AGCAAGCGTTGCTTGCACGACGCCTGCACGAAGATTCCTAGCTTCAATAT
CGAGGGCAGCAAGACAGCATCGTACTGCAAACACCACGCTGAGGACGGCA
TGGTGTATGTCCTTGGGAGGCGTTGCTCTCACGGTGATTGCACGACGATT
GCGAAGTTCAATACTGAGGGCTGCAAGCGGGGGGCGTACTGCAAGAAACA
CGCTACGCACAGAATGGTGAATGTCGTCAGTAGGCGTTGC
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