mRNA_M-pyrifera_M_contig9199.21297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9199.21297.1
Unique NamemRNA_M-pyrifera_M_contig9199.21297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9199.21297.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.840e-15
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:    2 GPGVMTFHKPEVVRIADNFIVDNQFNDEPVTGCTLGYVQEG-TTLVGFEFDDVCVEDTV 175
            G G +TF KPEVVRI+DN ++ N++N +P+TGC+L YV+   TT+VGF+FDD+C E TV
Sbjct:  338 GDGSVTFEKPEVVRISDNTLLANEYNPDPITGCSLAYVEGNETTVVGFDFDDICQEVTV 396
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9199.21297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHY2_ECTSI7.840e-1557.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9199contigM-pyrifera_M_contig9199:5315..6651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size278
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9199.21297.1prot_M-pyrifera_M_contig9199.21297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9199 5415..6638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.8082771-UTR-M-pyrifera_M_contig9199:5314..54141622816832.8082771-UTR-M-pyrifera_M_contig9199:5314..5414Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9199 5315..5414 -
1692278205.0338387-UTR-M-pyrifera_M_contig9199:5314..54141692278205.0338387-UTR-M-pyrifera_M_contig9199:5314..5414Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9199 5315..5414 -
1622816832.8445404-UTR-M-pyrifera_M_contig9199:6638..66511622816832.8445404-UTR-M-pyrifera_M_contig9199:6638..6651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9199 6639..6651 -
1692278205.0768585-UTR-M-pyrifera_M_contig9199:6638..66511692278205.0768585-UTR-M-pyrifera_M_contig9199:6638..6651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9199 6639..6651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.8219833-CDS-M-pyrifera_M_contig9199:5414..55071622816832.8219833-CDS-M-pyrifera_M_contig9199:5414..5507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9199 5415..5507 -
1692278205.0461361-CDS-M-pyrifera_M_contig9199:5414..55071692278205.0461361-CDS-M-pyrifera_M_contig9199:5414..5507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9199 5415..5507 -
1622816832.8337414-CDS-M-pyrifera_M_contig9199:6566..66381622816832.8337414-CDS-M-pyrifera_M_contig9199:6566..6638Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9199 6567..6638 -
1692278205.063373-CDS-M-pyrifera_M_contig9199:6566..66381692278205.063373-CDS-M-pyrifera_M_contig9199:6566..6638Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9199 6567..6638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9199.21297.1

>prot_M-pyrifera_M_contig9199.21297.1 ID=prot_M-pyrifera_M_contig9199.21297.1|Name=mRNA_M-pyrifera_M_contig9199.21297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MTFHKPEVVRIADNFIVDNQFNDEPVTGCTLGYVQEGTTLVGFEFDDVCV
EDTV*
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mRNA from alignment at M-pyrifera_M_contig9199:5315..6651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9199.21297.1 ID=mRNA_M-pyrifera_M_contig9199.21297.1|Name=mRNA_M-pyrifera_M_contig9199.21297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1337bp|location=Sequence derived from alignment at M-pyrifera_M_contig9199:5315..6651- (Macrocystis pyrifera P11B4 male)
CGGCCCCGGCGTGATGACGTTCCACAAGCCAGAGGTGGTCAGGATCGCGG
ACAACTTCATCGTCGACAACCAGTTCAACGACGAGGTGCAGTGTGTAGGA
TACAATCACACTCGCAGGAGAGCCTGCCCGCCAGCGTTGTTTCAGTAAAT
TTAACCCCAGGATCTGCTCGCTGTACCGTTCGAACTATTAGTAGACGCAA
CGCGTTCCTACTAGGAAATACCTCGAACTCGTACTTGTTTTTCGGCGATT
GGTGACTGACGCGACTTTTGATGAACTCGACGGCACGAGATGCACTTAAA
AATTGATGCACTTCTACTGTTAATACCTCTTGTTATGTTTACGAAGCGCA
ACGAGGAACTCCGGGTTCTGTGCCTACAGCCCTCGAGGTATTGTACCTAT
TTAGCAAACCGAGCACAACTTTCACAAATCGGGGATAAAATATAGTGCAT
ACCGCTCATTCGCGGATTGTTCTCGTAAGGTATTGAAATCAATGGGCCCA
TGCTCCGCATCTATACTACTACTGTTACTGCTACTGCCCGCTGTTCCCCG
CAAGCCGAAACCTGAGCGCACTGTTCGCGCGTGCGTGCCCCACCTATTTG
GACTACCACTCTGGGCGGCAATATAAAGACCGTTCAGACATTCAACATAA
AGACCAATCGGCCCTTAAGTTTGGGCCCGGAGTGGAATGTATGTGCGTAC
TCGCGTGGTCAACTCTGTGATGCCTCCGTTGTATGTGTATGTGTATGCCC
TACAGTAGTTTCGTCACCGAGCTGATCGGTCTCTGTATTGTGTCCGTCGA
TGCCCCCCCTCCCACCCACGCTATCATACGACTACGGCCATGCATGATAA
TGAGTACACCCCCCCCCCGCCCGCTAAAACAACTCATTGACACTGTCATC
CGTATACAAGTCCGTCTCACAAGCGGTTCTTAGTAGGACGCAGCTCACCC
TTCATGCGACTACGGTAGCCGAAAATCTCATGGCCCTTCGCGCTCGGTGC
AAGCAATGTCTGCCTGGTCGGTGAAACCCGACGTTCCTCGTCCCGGCATT
GTAGGAATGCGAGGGTCTATGGTCATACGACTGCATCCATGCTTGAGATC
AAATACACACCCCCGCCGCCCCCACCCCTCGCGCCTGCACGCAGCCGGTG
ACTGGATGCACTCTGGGCTACGTCCAGGAGGGCACCACCCTGGTTGGTTT
CGAGTTCGATGACGTCTGCGTCGAGGACACGGTGTAACGCTGATCAATGC
GGAACCCCCTCTACTGTAACAATAAACAATGGCACCAAGCAAAATATAGG
GTCGGTCTACTACTCCACGTTTGAGGACATTTTCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9199:5315..6651-

>mRNA_M-pyrifera_M_contig9199.21297.1 ID=mRNA_M-pyrifera_M_contig9199.21297.1|Name=mRNA_M-pyrifera_M_contig9199.21297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig9199:5315..6651- (Macrocystis pyrifera P11B4 male)
ATGACGTTCCACAAGCCAGAGGTGGTCAGGATCGCGGACAACTTCATCGT
CGACAACCAGTTCAACGACGAGATGACGTTCCACAAGCCAGAGGTGGTCA
GGATCGCGGACAACTTCATCGTCGACAACCAGTTCAACGACGAGCCGGTG
ACTGGATGCACTCTGGGCTACGTCCAGGAGGGCACCACCCTGGTTGGTTT
CGAGTTCGATGACGTCTGCGTCGAGGACACGGTGTAACCGGTGACTGGAT
GCACTCTGGGCTACGTCCAGGAGGGCACCACCCTGGTTGGTTTCGAGTTC
GATGACGTCTGCGTCGAGGACACGGTGTAA
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