mRNA_M-pyrifera_M_contig91882.21276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91882.21276.1
Unique NamemRNA_M-pyrifera_M_contig91882.21276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: B3RVZ3_TRIAD (Helicase C-terminal domain-containing protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RVZ3_TRIAD)

HSP 1 Score: 313 bits (803), Expect = 3.890e-101
Identity = 160/257 (62.26%), Postives = 200/257 (77.82%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            KGDIL+F+ GQE+IE  C LI E+L  +   PPL +LP+YSQLPSDLQ +IF +  +      VRK VV+TNIAETSLTVDG+ YV+D G+CK+KVYNP++GMDALQV P+S+ANA+QR GRAGRTGPG+CFRLY+E+A+  ELL +  PEIQRTNLA VVLLLKSLGV +   F F+DPPP   I  + Y+L+VLGALD++G LTPLGRQMV+FPL P LSK+L+ S D+EC  E LT+VSMLSV     +F+ P+
Sbjct:   54 KGDILIFMPGQEDIEVTCDLITERLGEVEGAPPLTVLPIYSQLPSDLQAKIFHRAPDG-----VRKCVVATNIAETSLTVDGIMYVIDCGYCKLKVYNPKIGMDALQVFPISQANANQRSGRAGRTGPGQCFRLYNESAYKNELLITNVPEIQRTNLANVVLLLKSLGVNNLLEFHFMDPPPQDNILNSMYQLWVLGALDNTGMLTPLGRQMVEFPLDPALSKMLIVSVDMECSAEILTIVSMLSVPT---IFYRPK 302
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A6P8I1S6_ACTTE (pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I1S6_ACTTE)

HSP 1 Score: 320 bits (821), Expect = 1.280e-98
Identity = 161/257 (62.65%), Postives = 207/257 (80.54%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            KGDIL+F+ GQE+IE  C+LI E+LS +   PPL +LP+YSQLPSDLQ +IF K  +      VRK VV+TNIAETSLTVDG+ +V+D+G+CK+KVYNP++GMDALQV P+S+ANA+QR GRAGRTGPG+CFRLY+E +++ ELL +  PEIQRTNLA VVLLLKSLGVQ+   F F+DPPP   I  + Y+L++LGALD++GALTPLGRQMV+FPL P +SK+L+ S D++C DE LT+VSMLSV A   +F+ P+
Sbjct:  638 KGDILIFMPGQEDIEVTCELITERLSEVDEAPPLAVLPIYSQLPSDLQAKIFQKAPDG-----VRKCVVATNIAETSLTVDGIMFVIDAGYCKLKVYNPKIGMDALQVYPISQANANQRSGRAGRTGPGQCFRLYTENSYNNELLYTTVPEIQRTNLANVVLLLKSLGVQNLLEFHFMDPPPQDNILNSMYQLWILGALDNTGALTPLGRQMVEFPLDPAMSKMLIVSVDMDCSDEVLTIVSMLSVPA---IFYRPK 886
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A397ANG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ANG4_9STRA)

HSP 1 Score: 308 bits (789), Expect = 5.790e-98
Identity = 151/246 (61.38%), Postives = 195/246 (79.27%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSV 738
            KGDILVF+TGQE+IEA C ++AE++  +   PPL++LPMYSQLP+DLQ +IFD  +       +RK +VSTNIAETSLTVDG+RYV+D+GFCK+KVYNP++GMDALQ+ PVS+ NA+QR GRAGRTGPG C+RLY+E  F  E++ +Q PEIQRTNL  +VLLLKSLGV++   F F+DPPP   I  + Y+L+VLGALD++G LT +G++M+ FPL PPL+K+LL S  L+C  E L VVSMLSV
Sbjct:  334 KGDILVFMTGQEDIEATCYVLAERMGRVDGAPPLMVLPMYSQLPADLQAKIFDASD-------IRKCIVSTNIAETSLTVDGIRYVIDAGFCKIKVYNPKIGMDALQITPVSQQNANQRAGRAGRTGPGVCYRLYTERQFCNEMMDAQVPEIQRTNLGYIVLLLKSLGVKNLLEFDFMDPPPQDNITNSMYQLWVLGALDNTGELTDMGKRMITFPLDPPLAKMLLFSESLKCTAEVLIVVSMLSV 572
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A224YU24_9ACAR (Mrna splicing factor atp dependent rna helicase (Fragment) n=2 Tax=Rhipicephalus TaxID=426455 RepID=A0A224YU24_9ACAR)

HSP 1 Score: 314 bits (805), Expect = 2.370e-97
Identity = 162/256 (63.28%), Postives = 200/256 (78.12%), Query Frame = 1 
Query:    4 GDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            GDILVF+ GQE+IE  C+LIAE+L  +   PPL ILP+YSQLPSDLQ +IF K  +      VRK VV+TNIAETSLTVDG+ +VVDSG+CK+KVYNPR+GMDALQ+ PVS+ANA+QR GRAGRTGPG CFRLY++  +  ELL +  PEIQRTNLA VVLLLKSLGVQD   F F+DPPP   I  + Y+L++LGALD+ G LTPLGR MV+FPL PPLSK+++ S D+ C +E LT+VSMLSV +   +F+ P+
Sbjct:  693 GDILVFMPGQEDIEVTCELIAERLGEIDNAPPLAILPIYSQLPSDLQAKIFQKAPDG-----VRKCVVATNIAETSLTVDGISFVVDSGYCKLKVYNPRIGMDALQIYPVSQANANQRSGRAGRTGPGTCFRLYTDHQYKNELLKTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILGALDNVGTLTPLGRHMVEFPLDPPLSKMVIVSCDMGCSEEILTIVSMLSVPS---IFYRPK 940
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A818QG02_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A818QG02_9BILA)

HSP 1 Score: 307 bits (787), Expect = 2.600e-97
Identity = 155/245 (63.27%), Postives = 193/245 (78.78%), Query Frame = 1 
Query:    4 GDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSV 738
            GDILVF+ GQE+IE  C+LI E+LS +    PL ILP+YSQLPSDLQ +IF K ++      +RK VV+TNIAETSLTVDG+ YVVDSG+CK+KVYNPR+GMDALQ+ PVS+ANA+QR GRAGRTGPG+CFRLY+E  F  E+L +  PEIQRTNLA VVLLLKSLG+QD   F F+DPPP   +  + Y+L++LGALD++G+LT LGRQMV+FPL P LS++L+ S  + C  E L +VSMLSV
Sbjct:  182 GDILVFMPGQEDIEVTCELIKERLSDLEGAKPLSILPIYSQLPSDLQAKIFQKADDG-----IRKCVVATNIAETSLTVDGIMYVVDSGYCKLKVYNPRIGMDALQIYPVSQANANQRMGRAGRTGPGQCFRLYTERNFREEMLKTNVPEIQRTNLANVVLLLKSLGIQDLLQFHFMDPPPQDNLMNSMYQLWILGALDNTGSLTQLGRQMVEFPLDPALSQMLITSVGMSCSSEILIIVSMLSV 421
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A372RPK8_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372RPK8_9GLOM)

HSP 1 Score: 301 bits (771), Expect = 2.650e-97
Identity = 153/256 (59.77%), Postives = 200/256 (78.12%), Query Frame = 1 
Query:    4 GDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            GDILVF+TGQE+IE  C++IAE+L  +  PP L ILP+YSQLP+DLQ RIF+K          RKV+V+TNIAETSLTVDG+ YVVD+G+ K+KV+NP++GMD+LQ+ P+S+ANA+QR GRAGRTG G C+RLY+E A+H E+  +  PEIQRTNLA VVLLLKSLGV++   F F+DPPP   I  + Y+L++LGALD++G LTPLGR+MV+FPL P LSK+L+ S +L C  E LT+VSMLSV +   +F+ P+
Sbjct:   55 GDILVFMTGQEDIEITCRVIAERLQQLDNPPSLEILPIYSQLPADLQARIFEKT-----ANNARKVIVATNIAETSLTVDGIMYVVDTGYNKLKVFNPKIGMDSLQITPISQANANQRSGRAGRTGAGTCYRLYTEQAYHHEMFMNTIPEIQRTNLANVVLLLKSLGVKNLLDFDFMDPPPQDNILNSMYQLWILGALDNTGELTPLGRRMVEFPLDPSLSKMLITSEELGCTAEILTIVSMLSVPS---VFYRPK 302
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A2B4SVA6_STYPI (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=4 Tax=Scleractinia TaxID=6125 RepID=A0A2B4SVA6_STYPI)

HSP 1 Score: 318 bits (815), Expect = 3.140e-97
Identity = 160/257 (62.26%), Postives = 206/257 (80.16%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            KGDILVF+ GQE+IE  C LI E+L+ +   PPL +LP+YSQLPSDLQ +IF K  +      VRK +V+TNIAETSLTVDG+ +V+DSG+CK+KV+NP++GMDALQV P+S+ANA+QR GRAGRTGPG+CFRL++E+++  ELL S  PEIQRTNL+ VVLLLKSLGVQ+   F F+DPPP   I  + Y+L++LGALD++G+LTPLGRQMV+FP+ P LSKLL+ + D+EC DESLT+VSMLSV A   +F  P+
Sbjct:  742 KGDILVFMPGQEDIEVTCDLITERLNELDETPPLAVLPIYSQLPSDLQAKIFQKAPDG-----VRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPKIGMDALQVYPISQANANQRSGRAGRTGPGQCFRLFTESSYKNELLVSTVPEIQRTNLSNVVLLLKSLGVQNLLEFHFMDPPPQDNILNSMYQLWILGALDNTGSLTPLGRQMVEFPVDPALSKLLIIAVDMECSDESLTIVSMLSVPA---IFFRPK 990
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A7M5X691_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X691_9CNID)

HSP 1 Score: 300 bits (769), Expect = 5.160e-97
Identity = 154/257 (59.92%), Postives = 196/257 (76.26%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            KGDILVF+ GQE+IE  C LI+E+L  +   PPL +LP+YSQLPSDLQ +IF+K  +      VRK VV+TNIAETSLTVDG+R+VVD+G+CK+KV+NP++GMDALQV P+S+ANA+QR GRAGRTGPG  FRLY+E  +  E+L    PEIQRTNLA VVL LKSL V D   F F+DPPP   I Q+ Y+L+ LGA+D++G LT +GR+MV+FPL P L+K+LL S ++ C DE LT+VSMLSV +   +F  PR
Sbjct:  113 KGDILVFMPGQEDIEVTCDLISERLEEIEGVPPLAVLPIYSQLPSDLQAKIFEKAPDG-----VRKCVVATNIAETSLTVDGIRFVVDAGYCKLKVFNPKIGMDALQVYPISQANANQRSGRAGRTGPGSAFRLYTETQYRNEMLVGTVPEIQRTNLANVVLTLKSLNVDDLLEFHFMDPPPQDNILQSMYQLWTLGAIDNTGMLTKMGRKMVEFPLDPSLAKMLLVSAEMGCSDEVLTIVSMLSVPS---IFSRPR 361
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: UPI001BB2470D (pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2470D)

HSP 1 Score: 306 bits (783), Expect = 6.790e-97
Identity = 157/257 (61.09%), Postives = 200/257 (77.82%), Query Frame = 1 
Query:    1 KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            +GDILVF+ GQE+IE  C LIAE+L  +   P L ILP+YSQLPSDLQ +IF K  +      VRK VV+TNIAETSLTVDG+ +VVD+G+CK+KVYNPR+GMDALQV P+S+ANA QR GRAGRTGPG+C+RLY+E+A+  ELL +  PEIQRTNLA VVLLLKSLGV D   F F+DPPP   +  + Y+L++LGALD++G LTP+GRQMV+FPL P LSKLL+ + ++ C  E+L +VSMLSV +   +F+ P+
Sbjct:  162 QGDILVFMPGQEDIEVTCDLIAERLGELDNAPQLAILPIYSQLPSDLQAKIFQKAPDG-----VRKCVVATNIAETSLTVDGIMFVVDAGYCKLKVYNPRIGMDALQVYPISQANARQRSGRAGRTGPGQCYRLYTESAYKNELLMTTVPEIQRTNLANVVLLLKSLGVDDLLLFHFMDPPPQDNMLNSMYQLWILGALDNTGQLTPIGRQMVEFPLDPALSKLLIVACEMGCSSEALIIVSMLSVPS---IFYRPK 410
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BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Match: A0A1D2N344_ORCCI (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2N344_ORCCI)

HSP 1 Score: 302 bits (773), Expect = 1.150e-96
Identity = 155/256 (60.55%), Postives = 196/256 (76.56%), Query Frame = 1 
Query:    4 GDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRRIFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPRLGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPPEIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALDDSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATNALFHTPR 771
            GDILVF+ GQE+IE  C+++AE+L  +   PPL ILP+YSQLPSDLQ +IF K  +      +RK VV+TNIAETSLTVDG+ +VVDSG+CK+KVYNPR+GMDALQ+ P+S+ANA+QR GRAGRTGPG CFRLY+E  +  ELL +  PEIQRTNL+ VVLLLKSLGVQD   F F+DPPP   +  + Y+L+ LGALD++G LT LGR MV+FPL P LSK+L+ S D+ C  + L +VSMLSV A   +F+ P+
Sbjct:   55 GDILVFMPGQEDIEVTCEVLAERLGQLDEAPPLAILPIYSQLPSDLQAKIFQKAPDG-----IRKCVVATNIAETSLTVDGIMFVVDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGSCFRLYTERQYKDELLVTTVPEIQRTNLSNVVLLLKSLGVQDLLQFHFMDPPPQDNMLNSMYQLWTLGALDNTGRLTDLGRAMVEFPLDPALSKMLIASVDMGCSADILIIVSMLSVPA---IFYRPK 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91882.21276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3RVZ3_TRIAD3.890e-10162.26Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6P8I1S6_ACTTE1.280e-9862.65pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A397ANG4_9STRA5.790e-9861.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A224YU24_9ACAR2.370e-9763.28Mrna splicing factor atp dependent rna helicase (F... [more]
A0A818QG02_9BILA2.600e-9763.27Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A372RPK8_9GLOM2.650e-9759.77P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2B4SVA6_STYPI3.140e-9762.26Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A7M5X691_9CNID5.160e-9759.92Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
UPI001BB2470D6.790e-9761.09pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A1D2N344_ORCCI1.150e-9660.55Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91882contigM-pyrifera_M_contig91882:1..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score314.7
Seed ortholog evalue4e-83
Seed eggNOG ortholog10228.TriadP50235
Preferred nameDHX38
KEGG koko:K12815
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007530,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019219,GO:0019222,GO:0022414,GO:0031123,GO:0031124,GO:0031323,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0040021,GO:0040022,GO:0042623,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048024,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990904
EggNOG free text desc.Pre-mRNA-splicing factor ATP-dependent RNA helicase
EggNOG OGs39WRX@33154,3C4UA@33208,COG1643@1,KOG0924@2759
EC3.6.4.13
COG Functional cat.A
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons1
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.5529006-CDS-M-pyrifera_M_contig91882:0..7711622816831.5529006-CDS-M-pyrifera_M_contig91882:0..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91882 1..771 +
1692278204.2363029-CDS-M-pyrifera_M_contig91882:0..7711692278204.2363029-CDS-M-pyrifera_M_contig91882:0..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91882 1..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91882.21276.1prot_M-pyrifera_M_contig91882.21276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91882 1..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91882.21276.1

>prot_M-pyrifera_M_contig91882.21276.1 ID=prot_M-pyrifera_M_contig91882.21276.1|Name=mRNA_M-pyrifera_M_contig91882.21276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
KGDILVFLTGQEEIEAACQLIAEKLSAMPAPPPLLILPMYSQLPSDLQRR
IFDKQEEAEGGEVVRKVVVSTNIAETSLTVDGVRYVVDSGFCKVKVYNPR
LGMDALQVAPVSRANADQRKGRAGRTGPGECFRLYSEAAFHRELLPSQPP
EIQRTNLATVVLLLKSLGVQDPSTFAFLDPPPPSAIHQAQYELFVLGALD
DSGALTPLGRQMVQFPLAPPLSKLLLRSHDLECIDESLTVVSMLSVGATN
ALFHTPR
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mRNA from alignment at M-pyrifera_M_contig91882:1..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91882.21276.1 ID=mRNA_M-pyrifera_M_contig91882.21276.1|Name=mRNA_M-pyrifera_M_contig91882.21276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig91882:1..771+ (Macrocystis pyrifera P11B4 male)
AAGGGCGACATCCTCGTCTTTCTCACGGGCCAGGAGGAGATTGAGGCCGC
GTGTCAACTAATTGCGGAAAAACTTTCCGCAATGCCCGCGCCGCCTCCAC
TCCTCATCCTCCCAATGTACTCGCAGCTGCCTTCGGATTTGCAGCGTCGC
ATTTTCGACAAGCAGGAGGAGGCGGAGGGCGGGGAGGTGGTGCGGAAGGT
GGTGGTGTCCACAAATATTGCGGAAACCTCACTTACCGTGGACGGCGTGC
GGTACGTGGTGGACTCTGGGTTCTGCAAGGTGAAGGTGTACAACCCCAGG
CTGGGCATGGATGCGCTGCAAGTGGCACCAGTGAGCAGAGCCAACGCTGA
CCAACGCAAAGGAAGAGCTGGGAGGACGGGACCAGGAGAATGTTTCCGAC
TCTATTCGGAAGCGGCGTTTCATCGCGAACTGCTGCCTTCGCAACCGCCA
GAAATCCAGCGCACAAACCTCGCGACCGTCGTGCTCCTGCTAAAGTCCCT
TGGCGTACAAGACCCGTCCACATTCGCCTTCCTCGACCCTCCACCTCCTT
CTGCAATTCACCAGGCGCAATACGAGCTTTTCGTGCTGGGAGCGTTGGAC
GACAGCGGTGCTCTGACTCCGTTGGGACGGCAAATGGTGCAATTCCCACT
CGCACCTCCTCTCTCCAAGCTCCTGCTGCGTTCTCACGACCTGGAGTGCA
TTGATGAGTCGCTCACTGTCGTCTCAATGCTGTCAGTGGGAGCAACGAAC
GCCCTCTTTCACACGCCGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91882:1..771+

>mRNA_M-pyrifera_M_contig91882.21276.1 ID=mRNA_M-pyrifera_M_contig91882.21276.1|Name=mRNA_M-pyrifera_M_contig91882.21276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig91882:1..771+ (Macrocystis pyrifera P11B4 male)
AAGGGCGACATCCTCGTCTTTCTCACGGGCCAGGAGGAGATTGAGGCCGC
GTGTCAACTAATTGCGGAAAAACTTTCCGCAATGCCCGCGCCGCCTCCAC
TCCTCATCCTCCCAATGTACTCGCAGCTGCCTTCGGATTTGCAGCGTCGC
ATTTTCGACAAGCAGGAGGAGGCGGAGGGCGGGGAGGTGGTGCGGAAGGT
GGTGGTGTCCACAAATATTGCGGAAACCTCACTTACCGTGGACGGCGTGC
GGTACGTGGTGGACTCTGGGTTCTGCAAGGTGAAGGTGTACAACCCCAGG
CTGGGCATGGATGCGCTGCAAGTGGCACCAGTGAGCAGAGCCAACGCTGA
CCAACGCAAAGGAAGAGCTGGGAGGACGGGACCAGGAGAATGTTTCCGAC
TCTATTCGGAAGCGGCGTTTCATCGCGAACTGCTGCCTTCGCAACCGCCA
GAAATCCAGCGCACAAACCTCGCGACCGTCGTGCTCCTGCTAAAGTCCCT
TGGCGTACAAGACCCGTCCACATTCGCCTTCCTCGACCCTCCACCTCCTT
CTGCAATTCACCAGGCGCAATACGAGCTTTTCGTGCTGGGAGCGTTGGAC
GACAGCGGTGCTCTGACTCCGTTGGGACGGCAAATGGTGCAATTCCCACT
CGCACCTCCTCTCTCCAAGCTCCTGCTGCGTTCTCACGACCTGGAGTGCA
TTGATGAGTCGCTCACTGTCGTCTCAATGCTGTCAGTGGGAGCAACGAAC
GCCCTCTTTCACACGCCGCGAAAGGGCGACATCCTCGTCTTTCTCACGGG
CCAGGAGGAGATTGAGGCCGCGTGTCAACTAATTGCGGAAAAACTTTCCG
CAATGCCCGCGCCGCCTCCACTCCTCATCCTCCCAATGTACTCGCAGCTG
CCTTCGGATTTGCAGCGTCGCATTTTCGACAAGCAGGAGGAGGCGGAGGG
CGGGGAGGTGGTGCGGAAGGTGGTGGTGTCCACAAATATTGCGGAAACCT
CACTTACCGTGGACGGCGTGCGGTACGTGGTGGACTCTGGGTTCTGCAAG
GTGAAGGTGTACAACCCCAGGCTGGGCATGGATGCGCTGCAAGTGGCACC
AGTGAGCAGAGCCAACGCTGACCAACGCAAAGGAAGAGCTGGGAGGACGG
GACCAGGAGAATGTTTCCGACTCTATTCGGAAGCGGCGTTTCATCGCGAA
CTGCTGCCTTCGCAACCGCCAGAAATCCAGCGCACAAACCTCGCGACCGT
CGTGCTCCTGCTAAAGTCCCTTGGCGTACAAGACCCGTCCACATTCGCCT
TCCTCGACCCTCCACCTCCTTCTGCAATTCACCAGGCGCAATACGAGCTT
TTCGTGCTGGGAGCGTTGGACGACAGCGGTGCTCTGACTCCGTTGGGACG
GCAAATGGTGCAATTCCCACTCGCACCTCCTCTCTCCAAGCTCCTGCTGC
GTTCTCACGACCTGGAGTGCATTGATGAGTCGCTCACTGTCGTCTCAATG
CTGTCAGTGGGAGCAACGAACGCCCTCTTTCACACGCCGCGA
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