mRNA_M-pyrifera_M_contig91866.21267.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91866.21267.1
Unique NamemRNA_M-pyrifera_M_contig91866.21267.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: Q8S160_ORYSJ (BNR repeat domain protein-like n=17 Tax=Oryzeae TaxID=147380 RepID=Q8S160_ORYSJ)

HSP 1 Score: 75.1 bits (183), Expect = 4.360e-14
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            ++ G+AHTLAL+  GE ++WG G  GRLGTG  A +  P ++    +   RF  +A+GA HSLA+D +G L+SWG
Sbjct:    8 VAAGEAHTLALTGDGEVYSWGRGMFGRLGTGREADEHVPTVVAAGGRPRPRFVAVASGAYHSLALDDEGSLWSWG 82          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A6J1W5U9_9SAUR (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1W5U9_9SAUR)

HSP 1 Score: 72.0 bits (175), Expect = 5.090e-14
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG  H+LA+S  G+ F+WG GG G+LGTG +    TP+ +  +A   +    +A G  HS+A+ KDG +FSWG
Sbjct:   17 ISCGKEHSLAISSQGKVFSWGAGGFGQLGTGKLKDSSTPKKI--DALSKYNVIQVACGHYHSIALTKDGRVFSWG 89          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A3B6EIF3_WHEAT (Uncharacterized protein n=11 Tax=Triticeae TaxID=147389 RepID=A0A3B6EIF3_WHEAT)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEA--------QKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            ++ G+AHTLAL+ +GE ++WG G  GRLGTG  A    P  +V           Q+P RF  +AAGA HSLA+D +G L+SWG
Sbjct:    8 VAAGEAHTLALTSNGELYSWGRGTFGRLGTGREADVHVPTAVVPAVAAAPAAGRQRP-RFTAVAAGAYHSLALDDEGSLWSWG 89          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A5D6XMQ6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMQ6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.970e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +S G  HT+ALS +GECF WG G  GRLGTG       P  + + AQ P +   +AAG  H+LA+ + G +FSWG
Sbjct:  200 ISAGKYHTIALSAAGECFVWGFGKGGRLGTGTEFDHVEPTRIASLAQIPIQQ--VAAGENHTLALSRSGQVFSWG 272          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A060Y5Q6_ONCMY (Uncharacterized protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060Y5Q6_ONCMY)

HSP 1 Score: 71.6 bits (174), Expect = 5.430e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTG-AVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG AH++AL++ G+ FAWG GG G+LG G A  + P PRL+    +   R   I  G +H +A+ KDG LF+WG
Sbjct:   49 VSCGQAHSMALNEQGQVFAWGAGGGGQLGLGTAEETVPIPRLIKKLCEH--RISQIMCGNKHCIALSKDGQLFTWG 122          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A8C5SRN2_LATLA (Uncharacterized protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SRN2_LATLA)

HSP 1 Score: 71.2 bits (173), Expect = 6.880e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG  H+LA+S  G+ F+WG GG G+LGTG +    TP+ +  +A   +    +A G  HS+A+ KDG +FSWG
Sbjct:   98 ISCGKEHSLAISSQGKVFSWGAGGVGQLGTGKLKDSSTPKKI--DALSMYNVIQVACGHFHSIALTKDGRVFSWG 170          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: UPI001132434A (probable E3 ubiquitin-protein ligase HERC3 n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI001132434A)

HSP 1 Score: 71.6 bits (174), Expect = 6.930e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTG-AVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG AH++AL++ G+ FAWG GG G+LG G A  + P PRL+    +   R   I  G +H +A+ KDG LF+WG
Sbjct:    7 VSCGQAHSMALNEQGQVFAWGAGGGGQLGLGTAEETVPIPRLIKKLCEH--RISQIMCGNKHCIALSKDGQLFTWG 80          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A8C6X6Y6_NAJNA (HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 n=2 Tax=Naja naja TaxID=35670 RepID=A0A8C6X6Y6_NAJNA)

HSP 1 Score: 71.6 bits (174), Expect = 7.390e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG  H+LA+S  G+ F+WG GG G+LGTG +    TP+ +  +A   +    +A G  HS+A+ KDG +FSWG
Sbjct:  117 ISCGKEHSLAISSQGKVFSWGAGGFGQLGTGKLKDSSTPKKI--DALSMYNVIQVACGHYHSIALTKDGRVFSWG 189          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: UPI0018AEEE40 (RCC1 domain-containing protein RUG3, mitochondrial isoform X2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEEE40)

HSP 1 Score: 70.5 bits (171), Expect = 8.750e-13
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            ++CG  H+LAL+D GE F+WGHGG G+LG G+  ++  P  LV EA    R   IA G   S A+  DG LF WG
Sbjct:  148 VACGGYHSLALTDKGEVFSWGHGGQGQLGHGSRQNEKVP--LVIEALAHKRITYIACGGSSSAAVADDGKLFMWG 220          
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Match: A0A6P9DKJ8_PANGU (probable E3 ubiquitin-protein ligase HERC6 isoform X1 n=4 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9DKJ8_PANGU)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPFRFHIIAAGARHSLAIDKDGVLFSWG 225
            +SCG  H+LA+S  G+ F+WG GG G+LGTG +    TP+ +  ++   +    +A G  HS+A+ KDG LFSWG
Sbjct:  101 ISCGKEHSLAISSQGKVFSWGAGGFGQLGTGNLKDSSTPKKI--DSLSMYNVIQVACGHYHSIALTKDGRLFSWG 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91866.21267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8S160_ORYSJ4.360e-1446.67BNR repeat domain protein-like n=17 Tax=Oryzeae Ta... [more]
A0A6J1W5U9_9SAUR5.090e-1444.00probable E3 ubiquitin-protein ligase HERC6 n=1 Tax... [more]
A0A3B6EIF3_WHEAT2.080e-1346.99Uncharacterized protein n=11 Tax=Triticeae TaxID=1... [more]
A0A5D6XMQ6_9STRA3.970e-1346.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A060Y5Q6_ONCMY5.430e-1346.05Uncharacterized protein n=1 Tax=Oncorhynchus mykis... [more]
A0A8C5SRN2_LATLA6.880e-1344.00Uncharacterized protein n=1 Tax=Laticauda laticaud... [more]
UPI001132434A6.930e-1346.05probable E3 ubiquitin-protein ligase HERC3 n=1 Tax... [more]
A0A8C6X6Y6_NAJNA7.390e-1344.00HECT and RLD domain containing E3 ubiquitin protei... [more]
UPI0018AEEE408.750e-1348.00RCC1 domain-containing protein RUG3, mitochondrial... [more]
A0A6P9DKJ8_PANGU1.010e-1244.00probable E3 ubiquitin-protein ligase HERC6 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91866contigM-pyrifera_M_contig91866:179..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.5
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog40148.OGLUM01G33490.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs37RJK@33090,3GFHM@35493,3I8AY@38820,3KQC1@4447,COG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.1527672-CDS-M-pyrifera_M_contig91866:178..4031622816831.1527672-CDS-M-pyrifera_M_contig91866:178..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91866 179..403 +
1692278204.021042-CDS-M-pyrifera_M_contig91866:178..4031692278204.021042-CDS-M-pyrifera_M_contig91866:178..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91866 179..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91866.21267.1prot_M-pyrifera_M_contig91866.21267.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91866 179..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91866.21267.1

>prot_M-pyrifera_M_contig91866.21267.1 ID=prot_M-pyrifera_M_contig91866.21267.1|Name=mRNA_M-pyrifera_M_contig91866.21267.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
LSCGDAHTLALSDSGECFAWGHGGSGRLGTGAVASQPTPRLLVNEAQKPF
RFHIIAAGARHSLAIDKDGVLFSWG
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mRNA from alignment at M-pyrifera_M_contig91866:179..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91866.21267.1 ID=mRNA_M-pyrifera_M_contig91866.21267.1|Name=mRNA_M-pyrifera_M_contig91866.21267.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig91866:179..403+ (Macrocystis pyrifera P11B4 male)
CTTTCTTGTGGCGATGCCCACACGCTGGCTCTATCGGATTCTGGGGAGTG TTTCGCGTGGGGCCATGGAGGCAGTGGGCGGTTGGGCACAGGAGCTGTGG CGTCCCAGCCCACTCCAAGACTGCTCGTCAATGAGGCACAAAAACCCTTT CGATTCCACATCATCGCTGCTGGAGCAAGACACTCGCTTGCCATTGACAA AGATGGAGTGCTTTTTTCGTGGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91866:179..403+

>mRNA_M-pyrifera_M_contig91866.21267.1 ID=mRNA_M-pyrifera_M_contig91866.21267.1|Name=mRNA_M-pyrifera_M_contig91866.21267.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig91866:179..403+ (Macrocystis pyrifera P11B4 male)
CTTTCTTGTGGCGATGCCCACACGCTGGCTCTATCGGATTCTGGGGAGTG
TTTCGCGTGGGGCCATGGAGGCAGTGGGCGGTTGGGCACAGGAGCTGTGG
CGTCCCAGCCCACTCCAAGACTGCTCGTCAATGAGGCACAAAAACCCTTT
CGATTCCACATCATCGCTGCTGGAGCAAGACACTCGCTTGCCATTGACAA
AGATGGAGTGCTTTTTTCGTGGGGACTTTCTTGTGGCGATGCCCACACGC
TGGCTCTATCGGATTCTGGGGAGTGTTTCGCGTGGGGCCATGGAGGCAGT
GGGCGGTTGGGCACAGGAGCTGTGGCGTCCCAGCCCACTCCAAGACTGCT
CGTCAATGAGGCACAAAAACCCTTTCGATTCCACATCATCGCTGCTGGAG
CAAGACACTCGCTTGCCATTGACAAAGATGGAGTGCTTTTTTCGTGGGGA
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