mRNA_M-pyrifera_M_contig91857.21263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91857.21263.1
Unique NamemRNA_M-pyrifera_M_contig91857.21263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A349B7B8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B7B8_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 2.990e-56
Identity = 106/252 (42.06%), Postives = 143/252 (56.75%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQGWTFEVVSIPVE-RTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLWMNTG 753
            G  GGFER  +     L  +G    +V      R +R +G+ +D   RD HDEYFL+ +  ER+ RLDLSDFD V+T+QPP+YL  HPR +AL YH  R FYD AD F  +G+V P +HAAAV  VR+++      V  WL GS EVA RL+ +W + +      ++  T+    +  Y P GPA+ V R EWPKR EL   AA    G+W+L  +G GSR+++ + L     DDPG A +      W N G
Sbjct:   11 GGVGGFERLAERCRTRLDQRGVDVSLVGFDARTRADRLHGVRIDDGTRDWHDEYFLYLAATERLDRLDLSDFDVVVTSQPPSYLVRHPRVVALTYHQARVFYDLADEFTAAGYVRPAVHAAAVEQVRALDRGRISGVHTWLTGSDEVADRLREWWGL-EGTTPFRASAETTPAADLGAYDPAGPAVCVSRHEWPKRTELVAQAAAGSEGTWEL--VGGGSRLAWVRHLLERWTDDPGAAAQAPPEATWRNRG 259          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A7Y2IJU9_9ACTN (Glycosyltransferase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IJU9_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 2.450e-47
Identity = 108/260 (41.54%), Postives = 144/260 (55.38%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQGWTFEVVSIPVE-RTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIAA----AWVEPGSWKLD-IIGSGSRMSFAKRLDAALADDPGDAPRLT---DRDLWMNTG 753
            G +GGFE H++ L+A LA +G +  +V +    R    YG  +   +R+ HDEYF +  LAER Q+LDL  FD V  TQPPTYLANH R  AL YHH R FYD AD F  +GFVD   HA A AAVR +++ A   V  +LAGS  VA RL+ YW++   +I       T +P   +        + V R EWPKR EL +AA    A    G+  +  ++G GSR +F   LDA L+  P +  R+      ++W N G
Sbjct:   14 GVTGGFELHVNALVAGLASRGHSVSLVGVDATVRPPSVYGYPVTPVLREWHDEYFRYLELAERTQQLDLQGFDVVCATQPPTYLANHNRLFALTYHHYRVFYDLADEFVAAGFVDADAHAHATAAVRQIDSDALPRVRSFLAGSDTVAERLRRYWNV--GSIGYRHPNVTDLPPASDRDPASSEILCVSRQEWPKRTELFVAAMHLTAAQRSGNRPIGHLVGGGSRANFVASLDAELSAKPNELQRIQGDESGEIWRNMG 271          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: UPI001D0DEBB2 (glycosyltransferase family 4 protein n=2 Tax=unclassified Cellulomonas TaxID=2620175 RepID=UPI001D0DEBB2)

HSP 1 Score: 141 bits (355), Expect = 4.070e-36
Identity = 91/252 (36.11%), Postives = 132/252 (52.38%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQGWTFEVVSIPVERTERS-YGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLWMNTG 753
            G  GGFE  +D ++ +L+  G   +VV + V    R+ +G  +D  +  +  E+F   +L ER + LDLSD+D V++TQPP+Y   HPR LALFYHH R FYD  D++  +G  D  +H AA A +R  EA     VGH+L GSR V  RL  +   P  + SL+ A   + P            + V R E+ KR EL + A  +  G     ++G G R+ + + L A  A    D   +  +DLW+N G
Sbjct:   11 GIRGGFEVVVDRVVRDLSAAGHDVDVVQVAVAELGRTPFGASVDPLVWAQAPEWFTHMALVERFRALDLSDYDVVVSTQPPSYAVRHPRHLALFYHHQRAFYDLEDVWVAAGRADAALHRAASALLRHAEADDIAGVGHFLVGSRRVQERLGEFHG-PGLSTSLYEA---AAPVVDAEAGGGSHVLTVSRHEFTKRTELTVQALAL--GDVPGVLVGDGGRLPYVRDLAARFATGALDPVAVAPQDLWLNLG 256          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A7V9GI12_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GI12_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 1.950e-30
Identity = 86/236 (36.44%), Postives = 120/236 (50.85%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQGWTFEVVSIPVERT-ERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSA-----PPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAA 690
            G +GGFE  LD L+  L   G       + V     +S G+ +   +  +  EYF +  +      LD  D D VL TQP ++  +HPRKLALF HH R FYD A+ F  +G+VDP +HA     VR+++A     + H+L  S EVA RL+ + +I     S   A      P SV  T  P   +G  + V R EWPKR EL  AAA + P    + ++GSG R+   K ++ A
Sbjct:   11 GITGGFELVLDRLVEVLERAGHEVGWARVDVPSLGHQSAGVEVPDDVWHQAPEYFRYMGIISAFAELDPPDADVVLCTQPGSWGIHHPRKLALFSHHLRVFYDLAEDFVAAGYVDPDLHAWCTEEVRAIDAPRIDEIAHFLVQSLEVAGRLERFNNIGTERCSPFLAGIGFRAPGSVTPTPPPA--DGYVLCVSRHEWPKRTELVAAAAHLLPADRGVVLVGSGGRLEHVKAIEVA 244          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A7V9B658_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B658_9ACTN)

HSP 1 Score: 115 bits (289), Expect = 8.980e-28
Identity = 84/238 (35.29%), Postives = 116/238 (48.74%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQG----WTFEVVSIPVERTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAP---PTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIA------AAWVEPGSWKLDIIGSGSRMSFAK 675
            G  GGFE  LD ++ +L+  G    W     +   +    ++G+ +   +     EYF + ++ ER   LD S  D +L TQP ++   HPRKLALFYHH R FYD A+ + D+GF DP  H    A VRS++A     V H+L  S EV +RL T+  I     S   A             P    G  + V R EWPKR EL +A      AA VE    ++ ++G G R+  AK
Sbjct:   11 GFRGGFEFVLDRIVDQLSAAGHDVVWLTIDAAAAGQPPHAAFGMAIPDDVWANAVEYFRYLTMVERFGALDASGTDVLLCTQPGSWAVEHPRKLALFYHHLRVFYDLAETYVDAGFSDPVFHDPCTAEVRSLDAPLIDGVRHFLTPSGEVDARLATFNGIGADRRSPFLAGFAFRDGRGVAARPSDGTGHVLSVSRHEWPKRTELVVATAHHLRAAGVEV---EVKVVGGGGRLEHAK 245          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: UPI00124E4FAE (glycosyltransferase family 4 protein n=1 Tax=Paenibacillus tengchongensis TaxID=2608684 RepID=UPI00124E4FAE)

HSP 1 Score: 110 bits (275), Expect = 1.450e-24
Identity = 79/251 (31.47%), Postives = 128/251 (51.00%), Query Frame = 1
Query:    7 SGGFERHLDGLLAELADQGWTFEVVSIPV-ERTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGP-----AIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLW 741
            +GGFE  ++ + AEL   G   E+V +   ER  ++    +      ++ ++F + +   +  RLDLS +D V++TQPP++   HPR +ALFYHH +  YD ++L  + G +D   H  A   +R +++ +   V   LAGS+ + +R+K Y D+  +    ++     +      Y+ EG       IVVGR E+PKR EL  A A  +   ++  IIG G R    KR+D  L    G    L+D  +W
Sbjct:   13 TGGFEVVINHIKAELERIGHQVELVYVDATERNIKNIPFPVSMQEYKQNPDFFNYINHFWKYMRLDLSKYDIVISTQPPSFAIQHPRHIALFYHHSKVHYDLSELIQEVG-LDQPFHQKAQEVIRGIDSMSLSKVSTILAGSKTIKNRIKKYNDLSSNVDVFYAGIDNDI------YNYEGSNKYQSPIVVGRHEFPKRPEL-FAKAMKKLRGYQGRIIGEGGRTDDLKRIDQLLTFASGQNVELSDDIVW 255          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A1R1A579_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus sp. FSL A5-0031 TaxID=1920420 RepID=A0A1R1A579_9BACL)

HSP 1 Score: 108 bits (271), Expect = 5.310e-24
Identity = 78/249 (31.33%), Postives = 128/249 (51.41%), Query Frame = 1
Query:    7 SGGFERHLDGLLAELADQGWTFEVVSIPVERTERSYGIHLDRPIRD----RHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLW 741
            +GGFE  ++ L  EL   G   EV  + ++ T+ S    +  PI D    ++ E+F + +   + +++D+S FD V++TQPP++   HPR ++LFYHH + +YD +DL  + G   P  H  +V  +R ++ S+   V   LAGS+ +  R+  +  I D    +++     +         E P IVVGR E+PKR EL +AA    P      I+GSG R    K++D  L     +   ++D + W
Sbjct:   13 TGGFEVVVNRLKLELEICG--HEVTIVYIDATDVSLK-DIPYPITDDMYYKNPEFFKYINNFWKYKKMDVSRFDCVISTQPPSFAVEHPRHISLFYHHMKMYYDMSDLIQEVGLQQP-FHRKSVEVIREIDTSSLNKVTSILAGSKTIKDRIARFNGITDQVDVIYAGINPHLYNFNGTVSYEYP-IVVGRHEFPKRPELFVAAMKKIPNQIG-KIVGSGGRTEDLKKIDQILTYSTNEGITISDNETW 255          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: UPI001F1DB4A6 (glycosyltransferase family 4 protein n=1 Tax=Paenibacillus sp. JJ-42 TaxID=2905648 RepID=UPI001F1DB4A6)

HSP 1 Score: 106 bits (265), Expect = 3.670e-23
Identity = 75/253 (29.64%), Postives = 133/253 (52.57%), Query Frame = 1
Query:    7 SGGFERHLDGLLAELADQGWTFEVVSIPV-ERTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEP--YHPEGPA-----IVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLW 741
            +GGFE  ++ L  EL   G   ++V +   + T      ++ + +  ++ E+F + ++  +  ++D+S FDAV++TQPP++   HPR ++LFYHH + FYD +DL  + G   P  H  +V  +R ++  +   V   LAGS+ + +R+K + ++ ++   +++         I+P  YH  G       IVVGR E+PKR EL + A    P      ++G+G R    K++D  LA    +   +TD  +W
Sbjct:   13 TGGFEVVVNRLKLELELIGHEVQMVYVDATDSTTNDIPYNISQDVFYKNPEFFKYINMYWKYLKMDVSQFDAVISTQPPSFAIQHPRHISLFYHHMKIFYDMSDLVLEVGLQQP-YHHKSVQVIREIDTLSLSKVRTILAGSQTIKNRIKQFNNLSNNVDVIYAG--------IDPDIYHFNGRVAYEYPIVVGRHEFPKRPELFVKAMKRLPHLVG-KVVGAGGRTDDLKKIDNLLAYTSREGIDITDDVVW 255          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: A0A7X2L2N3_9BACL (Glycosyltransferase n=1 Tax=Paenibacillus monticola TaxID=2666075 RepID=A0A7X2L2N3_9BACL)

HSP 1 Score: 105 bits (263), Expect = 7.100e-23
Identity = 75/251 (29.88%), Postives = 127/251 (50.60%), Query Frame = 1
Query:    7 SGGFERHLDGLLAELADQGWTFEVVSIPV-ERTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPA-----IVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLW 741
            +GGFE  ++ + AEL  +G   ++V++   +RT       +D  I  ++ ++F + +   +  ++DLS +D V++TQPP++   HPR +ALFYHH +  YD ++LF + G   P  H  A   +R +++ +   V   LAGS  +  R+  + ++  +    ++     +      Y+  GP      IVVGR E+PKR EL + A    P S+   IIG G R    KR+D  L     +   + D  +W
Sbjct:   13 TGGFEVVVNHIKAELEYRGHNVDIVNVDATKRTLNDIPCSIDSHIFQQNADFFRYINYFWKYLKMDLSMYDIVISTQPPSFAIQHPRHIALFYHHSKAHYDLSELFQEVGLHQP-YHRKAQEVIREIDSLSLSKVSIILAGSNTIKERIAKFNNLSVNVDLFYAGIDKDI------YNYSGPLSYNYPIVVGRHEFPKRPELFVNAMKKLPNSYGR-IIGEGGRTDDLKRIDQLLTYTSIEGIYIPDDVIW 255          
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Match: UPI001C624DF5 (glycosyltransferase family 4 protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C624DF5)

HSP 1 Score: 103 bits (258), Expect = 4.980e-22
Identity = 85/258 (32.95%), Postives = 122/258 (47.29%), Query Frame = 1
Query:    1 GASGGFERHLDGLLAELADQGW--TFEVVSIPVERTERSYGIHLDRPIRDRHDEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQFYDQADLFADSGFV-DPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRLKTYWDIPDSAISLHSAPPTSVPTTIEPY--------HPEGPAIVVGRLEWPKRQELAIAAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLW 741
            G +GGFER    + A L   G   T   V +P +   R +G  +         EYF + +  E   R+    FDAV++TQPP+    HPR LALF+HH R FYD  D++   GF  DP +H  A   VR+++      V  + AGS  V  RL  +  I D     H+    +V  T+             +GP + VGRLE+PKR EL +AA    P    + ++G G R  + + +D  L+    D  R+ +  LW
Sbjct:   20 GVAGGFERVAARVEATLRADGHDVTRLSVELPWDPRPRVFGTAISPEAWWSSPEYFRYLAGVEEFDRVVTRRFDAVVSTQPPSTTHRHPRHLALFFHHHRVFYDLEDVWLAGGFAPDPDLHRQAGIRVRALDQPRFEAVRWFAAGSETVRRRLGHFNGI-DRVSLFHAG--MAVGGTVAAAARRAAAGERRDGPVLCVGRLEFPKRPELLVAAMRRLPEVPAV-LVGDGGRTEWVRAIDHRLSRPGLDLDRVDETALW 273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91857.21263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A349B7B8_9ACTN2.990e-5642.06Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2IJU9_9ACTN2.450e-4741.54Glycosyltransferase n=1 Tax=Acidimicrobiales bacte... [more]
UPI001D0DEBB24.070e-3636.11glycosyltransferase family 4 protein n=2 Tax=uncla... [more]
A0A7V9GI12_9ACTN1.950e-3036.44Glycosyltransferase family 4 protein n=1 Tax=Acidi... [more]
A0A7V9B658_9ACTN8.980e-2835.29Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
UPI00124E4FAE1.450e-2431.47glycosyltransferase family 4 protein n=1 Tax=Paeni... [more]
A0A1R1A579_9BACL5.310e-2431.33Uncharacterized protein n=1 Tax=Paenibacillus sp. ... [more]
UPI001F1DB4A63.670e-2329.64glycosyltransferase family 4 protein n=1 Tax=Paeni... [more]
A0A7X2L2N3_9BACL7.100e-2329.88Glycosyltransferase n=1 Tax=Paenibacillus monticol... [more]
UPI001C624DF54.980e-2232.95glycosyltransferase family 4 protein n=1 Tax=Iamia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91857contigM-pyrifera_M_contig91857:5..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog190650.CC_1013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycosyl transferase group 1
EggNOG OGs1R4BE@1224,2VF5D@28211,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.999115-CDS-M-pyrifera_M_contig91857:4..7571622816830.999115-CDS-M-pyrifera_M_contig91857:4..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91857 5..757 +
1692278203.9265141-CDS-M-pyrifera_M_contig91857:4..7571692278203.9265141-CDS-M-pyrifera_M_contig91857:4..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91857 5..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91857.21263.1prot_M-pyrifera_M_contig91857.21263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91857 5..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91857.21263.1

>prot_M-pyrifera_M_contig91857.21263.1 ID=prot_M-pyrifera_M_contig91857.21263.1|Name=mRNA_M-pyrifera_M_contig91857.21263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
GASGGFERHLDGLLAELADQGWTFEVVSIPVERTERSYGIHLDRPIRDRH
DEYFLWASLAERIQRLDLSDFDAVLTTQPPTYLANHPRKLALFYHHPRQF
YDQADLFADSGFVDPTIHAAAVAAVRSVEASAPITVGHWLAGSREVASRL
KTYWDIPDSAISLHSAPPTSVPTTIEPYHPEGPAIVVGRLEWPKRQELAI
AAAWVEPGSWKLDIIGSGSRMSFAKRLDAALADDPGDAPRLTDRDLWMNT
G
back to top

mRNA from alignment at M-pyrifera_M_contig91857:5..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91857.21263.1 ID=mRNA_M-pyrifera_M_contig91857.21263.1|Name=mRNA_M-pyrifera_M_contig91857.21263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig91857:5..757+ (Macrocystis pyrifera P11B4 male)
GGCGCCAGCGGCGGATTCGAGCGCCACCTCGACGGCCTCCTCGCCGAGCT CGCGGACCAAGGCTGGACGTTCGAGGTCGTGTCGATCCCCGTCGAGCGAA CCGAGCGCAGCTACGGCATCCATCTCGATCGACCGATCCGAGATCGACAC GACGAGTATTTCCTGTGGGCCTCGCTGGCCGAACGAATCCAACGCCTCGA CCTGTCGGACTTCGACGCCGTCCTGACGACCCAACCCCCGACCTATCTGG CGAACCACCCCCGGAAGCTGGCGCTCTTCTATCACCACCCCCGCCAGTTC TACGATCAGGCCGACCTCTTCGCCGACAGCGGCTTCGTCGACCCGACGAT CCATGCGGCAGCCGTCGCCGCCGTTCGATCGGTCGAGGCGTCGGCACCAA TCACGGTGGGCCACTGGCTGGCCGGCTCTCGAGAGGTCGCGTCACGGTTG AAGACCTACTGGGACATCCCGGATTCGGCCATCTCTCTCCACTCCGCTCC CCCGACCTCGGTCCCGACCACCATCGAGCCCTACCATCCCGAGGGCCCCG CCATCGTCGTCGGCCGACTGGAATGGCCGAAGCGCCAAGAACTCGCCATC GCAGCGGCGTGGGTCGAACCAGGGTCGTGGAAGCTCGACATCATCGGCTC GGGCAGCCGGATGAGCTTCGCCAAGCGCCTCGATGCCGCCTTGGCCGATG ACCCAGGCGACGCCCCTCGTCTCACCGATCGCGACTTGTGGATGAACACC GGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91857:5..757+

>mRNA_M-pyrifera_M_contig91857.21263.1 ID=mRNA_M-pyrifera_M_contig91857.21263.1|Name=mRNA_M-pyrifera_M_contig91857.21263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig91857:5..757+ (Macrocystis pyrifera P11B4 male)
GGCGCCAGCGGCGGATTCGAGCGCCACCTCGACGGCCTCCTCGCCGAGCT
CGCGGACCAAGGCTGGACGTTCGAGGTCGTGTCGATCCCCGTCGAGCGAA
CCGAGCGCAGCTACGGCATCCATCTCGATCGACCGATCCGAGATCGACAC
GACGAGTATTTCCTGTGGGCCTCGCTGGCCGAACGAATCCAACGCCTCGA
CCTGTCGGACTTCGACGCCGTCCTGACGACCCAACCCCCGACCTATCTGG
CGAACCACCCCCGGAAGCTGGCGCTCTTCTATCACCACCCCCGCCAGTTC
TACGATCAGGCCGACCTCTTCGCCGACAGCGGCTTCGTCGACCCGACGAT
CCATGCGGCAGCCGTCGCCGCCGTTCGATCGGTCGAGGCGTCGGCACCAA
TCACGGTGGGCCACTGGCTGGCCGGCTCTCGAGAGGTCGCGTCACGGTTG
AAGACCTACTGGGACATCCCGGATTCGGCCATCTCTCTCCACTCCGCTCC
CCCGACCTCGGTCCCGACCACCATCGAGCCCTACCATCCCGAGGGCCCCG
CCATCGTCGTCGGCCGACTGGAATGGCCGAAGCGCCAAGAACTCGCCATC
GCAGCGGCGTGGGTCGAACCAGGGTCGTGGAAGCTCGACATCATCGGCTC
GGGCAGCCGGATGAGCTTCGCCAAGCGCCTCGATGCCGCCTTGGCCGATG
ACCCAGGCGACGCCCCTCGTCTCACCGATCGCGACTTGTGGATGAACACC
GGGGGCGCCAGCGGCGGATTCGAGCGCCACCTCGACGGCCTCCTCGCCGA
GCTCGCGGACCAAGGCTGGACGTTCGAGGTCGTGTCGATCCCCGTCGAGC
GAACCGAGCGCAGCTACGGCATCCATCTCGATCGACCGATCCGAGATCGA
CACGACGAGTATTTCCTGTGGGCCTCGCTGGCCGAACGAATCCAACGCCT
CGACCTGTCGGACTTCGACGCCGTCCTGACGACCCAACCCCCGACCTATC
TGGCGAACCACCCCCGGAAGCTGGCGCTCTTCTATCACCACCCCCGCCAG
TTCTACGATCAGGCCGACCTCTTCGCCGACAGCGGCTTCGTCGACCCGAC
GATCCATGCGGCAGCCGTCGCCGCCGTTCGATCGGTCGAGGCGTCGGCAC
CAATCACGGTGGGCCACTGGCTGGCCGGCTCTCGAGAGGTCGCGTCACGG
TTGAAGACCTACTGGGACATCCCGGATTCGGCCATCTCTCTCCACTCCGC
TCCCCCGACCTCGGTCCCGACCACCATCGAGCCCTACCATCCCGAGGGCC
CCGCCATCGTCGTCGGCCGACTGGAATGGCCGAAGCGCCAAGAACTCGCC
ATCGCAGCGGCGTGGGTCGAACCAGGGTCGTGGAAGCTCGACATCATCGG
CTCGGGCAGCCGGATGAGCTTCGCCAAGCGCCTCGATGCCGCCTTGGCCG
ATGACCCAGGCGACGCCCCTCGTCTCACCGATCGCGACTTGTGGATGAAC
ACCGGG
back to top