mRNA_M-pyrifera_M_contig91851.21261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91851.21261.1
Unique NamemRNA_M-pyrifera_M_contig91851.21261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A2U1MPB7_ARTAN (Photosystem I n=40 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MPB7_ARTAN)

HSP 1 Score: 241 bits (615), Expect = 2.230e-77
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCIIDTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD TCI+DTNRN T MA+KSLIQREKKRQKLE+KYH IRRSSK+EISKV SLS+KWEI+GKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW
Sbjct:  209 KPVALSIVQARLVGLAHFSDPTCIMDTNRNLTSMAKKSLIQREKKRQKLEQKYHSIRRSSKEEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 341
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A816JB41_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816JB41_BRANA)

HSP 1 Score: 230 bits (587), Expect = 9.930e-74
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRS KKEIS++PSLSEKW+IHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMV ACLLPGATRSSW
Sbjct:  162 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 296
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A3P6DWV1_BRAOL (Photosystem I n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6DWV1_BRAOL)

HSP 1 Score: 230 bits (587), Expect = 6.300e-72
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRS KKEIS++PSLSEKW+IHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMV ACLLPGATRSSW
Sbjct:  308 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 442
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A078EFV5_BRANA (Photosystem I n=3 Tax=Brassica TaxID=3705 RepID=A0A078EFV5_BRANA)

HSP 1 Score: 230 bits (587), Expect = 1.020e-69
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRS KKEIS++PSLSEKW+IHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMV ACLLPGATRSSW
Sbjct:  540 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 674
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A078HM06_BRANA (Photosystem I n=15 Tax=Brassicaceae TaxID=3700 RepID=A0A078HM06_BRANA)

HSP 1 Score: 230 bits (587), Expect = 1.090e-69
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRS KKEIS++PSLSEKW+IHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMV ACLLPGATRSSW
Sbjct:  544 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 678
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A0D3EEW1_BRAOL (Photosystem I n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D3EEW1_BRAOL)

HSP 1 Score: 225 bits (574), Expect = 1.420e-69
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRSSKKEI ++PSL EKW+IHGKLQSPPRNS PTRLHRRCFS GRPRANYRDFGLSGHILREMV ACLLPGATRSSW
Sbjct:  345 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSSKKEIREIPSLREKWKIHGKLQSPPRNSGPTRLHRRCFSNGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 479
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A816SKL5_BRANA (Photosystem I n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816SKL5_BRANA)

HSP 1 Score: 218 bits (556), Expect = 5.340e-67
Identity = 112/132 (84.85%), Postives = 120/132 (90.91%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCII--DTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATR 390
            KPVALSIVQARLVGLAHFSD  CII  D  RN ++MA+KSLI REKKRQKLE+KYHLIRRS KKEIS++PSLSEKW+IHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMV ACLLPG  +
Sbjct:  331 KPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGGNK 462
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: E5KU94_CORLA (30S ribosomal protein S14, chloroplastic n=197 Tax=Eukaryota TaxID=2759 RepID=E5KU94_CORLA)

HSP 1 Score: 196 bits (497), Expect = 9.030e-63
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:  100 MARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            MARKSLIQREKKRQ+LE+KYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCF TGRPRANYRDFGLSGHILREMVHACLLPGATRSSW
Sbjct:    1 MARKSLIQREKKRQELEQKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFLTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 100
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: A0A6S7LXI2_LACSI (Uncharacterized protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7LXI2_LACSI)

HSP 1 Score: 201 bits (512), Expect = 2.620e-61
Identity = 107/133 (80.45%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:    1 KPVALSIVQARLVGLAHFSDLTCIIDTNRN*TLMARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            KPVALSIVQARLVGLAHFS                      REKKRQKLE+KYHLIRRSSKKEISKV SLS+KWEI+GKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW
Sbjct:  275 KPVALSIVQARLVGLAHFS----------------------REKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 385
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BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Match: RR14_GUIAB (30S ribosomal protein S14, chloroplastic n=504 Tax=cellular organisms TaxID=131567 RepID=RR14_GUIAB)

HSP 1 Score: 191 bits (486), Expect = 4.290e-61
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:  100 MARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 399
            MA+KSLIQREKKRQKLE+KYHLIRRSSKKEISKV SLS+KWEI+GKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW
Sbjct:    1 MAKKSLIQREKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91851.21261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1MPB7_ARTAN2.230e-7791.73Photosystem I n=40 Tax=Anthemideae TaxID=102810 Re... [more]
A0A816JB41_BRANA9.930e-7487.41(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A3P6DWV1_BRAOL6.300e-7287.41Photosystem I n=1 Tax=Brassica oleracea TaxID=3712... [more]
A0A078EFV5_BRANA1.020e-6987.41Photosystem I n=3 Tax=Brassica TaxID=3705 RepID=A0... [more]
A0A078HM06_BRANA1.090e-6987.41Photosystem I n=15 Tax=Brassicaceae TaxID=3700 Rep... [more]
A0A0D3EEW1_BRAOL1.420e-6985.19Photosystem I n=2 Tax=Brassica oleracea TaxID=3712... [more]
A0A816SKL5_BRANA5.340e-6784.85Photosystem I n=1 Tax=Brassica napus TaxID=3708 Re... [more]
E5KU94_CORLA9.030e-6397.0030S ribosomal protein S14, chloroplastic n=197 Tax... [more]
A0A6S7LXI2_LACSI2.620e-6180.45Uncharacterized protein n=1 Tax=Lactuca saligna Ta... [more]
RR14_GUIAB4.290e-6195.0030S ribosomal protein S14, chloroplastic n=504 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91851contigM-pyrifera_M_contig91851:1..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score194.1
Seed ortholog evalue3.1e-47
Seed eggNOG ortholog4155.Migut.D01348.1.p
Preferred namerps14
KEGG koko:K02954
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 16S rRNA, required for the assembly of 30S particles
EggNOG OGs37VQM@33090,3GJZT@35493,COG0199@1,KOG1741@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size402
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91851.21261.1prot_M-pyrifera_M_contig91851.21261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91851 252..554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.9058032-UTR-M-pyrifera_M_contig91851:0..571622816830.9058032-UTR-M-pyrifera_M_contig91851:0..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91851 1..57 +
1692278203.8807833-UTR-M-pyrifera_M_contig91851:0..571692278203.8807833-UTR-M-pyrifera_M_contig91851:0..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91851 1..57 +
1622816830.919293-UTR-M-pyrifera_M_contig91851:209..2511622816830.919293-UTR-M-pyrifera_M_contig91851:209..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91851 210..251 +
1692278203.8959029-UTR-M-pyrifera_M_contig91851:209..2511692278203.8959029-UTR-M-pyrifera_M_contig91851:209..251Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91851 210..251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.934343-CDS-M-pyrifera_M_contig91851:251..5541622816830.934343-CDS-M-pyrifera_M_contig91851:251..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91851 252..554 +
1692278203.9048665-CDS-M-pyrifera_M_contig91851:251..5541692278203.9048665-CDS-M-pyrifera_M_contig91851:251..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91851 252..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91851.21261.1

>prot_M-pyrifera_M_contig91851.21261.1 ID=prot_M-pyrifera_M_contig91851.21261.1|Name=mRNA_M-pyrifera_M_contig91851.21261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MARKSLIQREKKRQKLEKKYHLIRRSSKKEISKVPSLSEKWEIHGKLQSP
PRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW
*
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mRNA from alignment at M-pyrifera_M_contig91851:1..554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91851.21261.1 ID=mRNA_M-pyrifera_M_contig91851.21261.1|Name=mRNA_M-pyrifera_M_contig91851.21261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=554bp|location=Sequence derived from alignment at M-pyrifera_M_contig91851:1..554+ (Macrocystis pyrifera P11B4 male)
AAACCGGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGCCCA
CTTTTCTGTCGGGTATATATTTACTTATGCGGCTTTCTTGATTGCCTCTA
CATCGGGTAAATTTGGTTAATTCTTTATTTTATGTGGTGTATCCGCAATA
ATATCATACCGTTTCTTTCGATGGAGAAGGGATCTACATTCTTATATTTT
TACATCTAGGATCTGACTTGTATCATTGATACTAATAGGAATTGAACCCT
TATGGCAAGAAAAAGTTTGATTCAGCGGGAGAAGAAGAGACAAAAATTGG
AAAAAAAATATCATTTGATTCGTCGATCCTCAAAAAAAGAAATAAGCAAA
GTTCCCTCGTTGAGCGAGAAATGGGAAATTCATGGAAAGTTACAATCCCC
ACCACGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTCGACCG
GAAGACCGAGAGCTAACTATCGAGACTTTGGGTTATCCGGACACATACTT
CGTGAAATGGTTCATGCATGTTTGTTGCCCGGGGCAACAAGATCAAGTTG
GTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91851:1..554+

>mRNA_M-pyrifera_M_contig91851.21261.1 ID=mRNA_M-pyrifera_M_contig91851.21261.1|Name=mRNA_M-pyrifera_M_contig91851.21261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig91851:1..554+ (Macrocystis pyrifera P11B4 male)
ATGGCAAGAAAAAGTTTGATTCAGCGGGAGAAGAAGAGACAAAAATTGGA
AAAAAAATATCATTTGATTCGTCGATCCTCAAAAAAAGAAATAAGCAAAG
TTCCCTCGTTGAGCGAGAAATGGGAAATTCATGGAAAGTTACAATCCCCA
CCACGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTCGACCGG
AAGACCGAGAGCTAACTATCGAGACTTTGGGTTATCCGGACACATACTTC
GTGAAATGGTTCATGCATGTTTGTTGCCCGGGGCAACAAGATCAAGTTGG
TAAATGGCAAGAAAAAGTTTGATTCAGCGGGAGAAGAAGAGACAAAAATT
GGAAAAAAAATATCATTTGATTCGTCGATCCTCAAAAAAAGAAATAAGCA
AAGTTCCCTCGTTGAGCGAGAAATGGGAAATTCATGGAAAGTTACAATCC
CCACCACGTAATAGTGCACCTACACGCCTTCATCGACGTTGTTTTTCGAC
CGGAAGACCGAGAGCTAACTATCGAGACTTTGGGTTATCCGGACACATAC
TTCGTGAAATGGTTCATGCATGTTTGTTGCCCGGGGCAACAAGATCAAGT
TGGTAA
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