mRNA_M-pyrifera_M_contig91799.21259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91799.21259.1
Unique NamemRNA_M-pyrifera_M_contig91799.21259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A7R9Z9A9_9STRA (Ribosomal protein L37 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9A9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.880e-43
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    4 TKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTASV 273
            TKGT+SFGKR +K+HV+CRRCGK SYH+QKSTCASCGFP A+MRR+NW+AKA RRRTQGTGRMR+L+++PRR KNGFRE TTA+ + AS 
Sbjct:    2 TKGTTSFGKRHNKTHVMCRRCGKSSYHVQKSTCASCGFPAAQMRRYNWAAKAKRRRTQGTGRMRYLKTMPRRFKNGFRERTTAQSKHASA 91
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A0L0DXM7_THETB (Ribosomal protein L37 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DXM7_THETB)

HSP 1 Score: 140 bits (353), Expect = 1.450e-41
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 QTKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTASV 273
            QTKGTSSFGKR +K+HVLCRRCG+R+YH+QK+TCASCG+P  KMR++NW  KA RRRT GTGRM++L+ +PRRAKNGFREGT AKK   S 
Sbjct:    9 QTKGTSSFGKRHTKTHVLCRRCGQRAYHVQKATCASCGYPSTKMRKYNWCTKAHRRRTTGTGRMKYLKHMPRRAKNGFREGTQAKKVKKSA 99
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A5J4Y7Z1_9CHLO (Ribosomal protein L37 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7Z1_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 7.670e-41
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    7 KGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTASV 273
            KGT SFGKR +K+H LCRRCG+RS+HIQKSTC+SCG+P A++R++NWSAKA+RR+T GTGRMR LR +PRRAKNGFREG TAK +T + 
Sbjct:    6 KGTGSFGKRRNKTHTLCRRCGRRSFHIQKSTCSSCGYPAARIRKYNWSAKAIRRKTTGTGRMRHLRDMPRRAKNGFREGETAKPRTQNA 94
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A2R5G8N7_9STRA (Ribosomal protein L37 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8N7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.220e-40
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    4 TKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAK 255
            TKGT +FGK+ +KSHVLCRRCGK SYH+QK+TCASCG+P  KMRR+ W  KALRRRT+GTGRMR+L+++PR+AKNGFREGT AK
Sbjct:    2 TKGTQAFGKKHNKSHVLCRRCGKSSYHVQKATCASCGYPSPKMRRYQWGKKALRRRTEGTGRMRYLKTIPRKAKNGFREGTVAK 85
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: F0YBC4_AURAN (Ribosomal protein L37 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBC4_AURAN)

HSP 1 Score: 137 bits (346), Expect = 1.410e-40
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    7 KGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTA 252
            KGTSSFGKR SK+H  CRRCGK S+HIQK  C+SCG+PGAKMRRFNWS K LRRRTQGTGRMR+++SLPRR KNGFREGT A
Sbjct:    1 KGTSSFGKRHSKTHTTCRRCGKVSFHIQKKVCSSCGYPGAKMRRFNWSEKGLRRRTQGTGRMRYMKSLPRRFKNGFREGTQA 82
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A7S4A793_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A793_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.480e-40
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    1 QTKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAK 255
            QTKGTSSFGKR SK+H  CRRCGK S+H+QK  CASCG+PGAKMRRFNWS KALRRRT GTGRMR +R +PRR KNGFREGT AK
Sbjct:  109 QTKGTSSFGKRHSKTHTTCRRCGKVSFHLQKKVCASCGYPGAKMRRFNWSEKALRRRTNGTGRMRHMRHMPRRFKNGFREGTQAK 193
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A261XUE3_9FUNG (Ribosomal protein L37 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUE3_9FUNG)

HSP 1 Score: 136 bits (342), Expect = 6.690e-40
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    4 TKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTASV 273
            TKGTSSFGKR SKSH LCRRCG RS+HIQK TCA CG+P AK+R +NWS K +RR+T GTGRMR+L+ + RR KNGFREGT AKKQT + 
Sbjct:    7 TKGTSSFGKRHSKSHTLCRRCGNRSFHIQKKTCAQCGYPAAKIRSYNWSVKGIRRKTTGTGRMRYLKIVSRRFKNGFREGTQAKKQTVAA 96
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A024GG16_9STRA (Ribosomal protein L37 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GG16_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.940e-40
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    4 TKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTA 252
            TKGT+SFGKR +K+H  CRRCGK SYHIQKSTCASCG+P AKMRR+NWS KALRRRTQGTGRMR+L+++ RR K+GFREGT A
Sbjct:    2 TKGTTSFGKRHNKTHTQCRRCGKSSYHIQKSTCASCGYPAAKMRRYNWSEKALRRRTQGTGRMRYLKTVSRRFKHGFREGTVA 84
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A4S0P5_OSTLU (Ribosomal protein L37 n=3 Tax=Ostreococcus TaxID=70447 RepID=A4S0P5_OSTLU)

HSP 1 Score: 135 bits (340), Expect = 1.160e-39
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    7 KGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTAS 270
            KGT SFG R +KSH LCRRCGKRSYHIQKSTCA+CG+P A+ R +NWS KA+ R+T GTGRMR+L++LPRR KNGFREGT AKK+ A+
Sbjct:    6 KGTGSFGSRRNKSHTLCRRCGKRSYHIQKSTCAACGYPSARTRSYNWSVKAIGRKTTGTGRMRYLKTLPRRFKNGFREGTEAKKKVAA 93
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BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Match: A0A835Z4E6_9STRA (Ribosomal protein L37 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.200e-39
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    4 TKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWSAKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQ 261
            TKGTSSFGKR +K+H  CRRCGK S+H QK TC+SCG+P AKMRRFNW+AKA RRRT+GTGRMR L+++PRR KNGFREGT AK Q
Sbjct:    2 TKGTSSFGKRHTKTHTACRRCGKTSFHKQKKTCSSCGYPAAKMRRFNWAAKAKRRRTEGTGRMRHLKTMPRRFKNGFREGTVAKPQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91799.21259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9Z9A9_9STRA6.880e-4374.44Ribosomal protein L37 n=1 Tax=Pseudictyota dubia T... [more]
A0A0L0DXM7_THETB1.450e-4171.43Ribosomal protein L37 n=1 Tax=Thecamonas trahens A... [more]
A0A5J4Y7Z1_9CHLO7.670e-4170.79Ribosomal protein L37 n=1 Tax=Trebouxia sp. A1-2 T... [more]
A0A2R5G8N7_9STRA1.220e-4073.81Ribosomal protein L37 n=1 Tax=Hondaea fermentalgia... [more]
F0YBC4_AURAN1.410e-4079.27Ribosomal protein L37 (Fragment) n=1 Tax=Aureococc... [more]
A0A7S4A793_9STRA4.480e-4078.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A261XUE3_9FUNG6.690e-4071.11Ribosomal protein L37 n=1 Tax=Bifiguratus adelaida... [more]
A0A024GG16_9STRA7.940e-4077.11Ribosomal protein L37 n=1 Tax=Albugo candida TaxID... [more]
A4S0P5_OSTLU1.160e-3971.59Ribosomal protein L37 n=3 Tax=Ostreococcus TaxID=7... [more]
A0A835Z4E6_9STRA1.200e-3974.42Ribosomal protein L37 n=1 Tax=Tribonema minus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91799contigM-pyrifera_M_contig91799:492..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.3e-31
Seed eggNOG ortholog529818.AMSG_02263T0
Preferred nameRPL37
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K02922,ko:K06269,ko:K07891,ko:K09557
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko03010,ko03015,ko04022,ko04024,ko04113,ko04114,ko04144,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map03010,map03015,map04022,map04024,map04113,map04114,map04144,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
KEGG ModuleM00135,M00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG3475@2759
EC1.2.1.3,3.1.3.16
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03019,ko03021,ko03041,ko03110,ko04031,ko04131
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.8334455-CDS-M-pyrifera_M_contig91799:491..7671622816830.8334455-CDS-M-pyrifera_M_contig91799:491..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91799 492..767 +
1692278203.850368-CDS-M-pyrifera_M_contig91799:491..7671692278203.850368-CDS-M-pyrifera_M_contig91799:491..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91799 492..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91799.21259.1prot_M-pyrifera_M_contig91799.21259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91799 492..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91799.21259.1

>prot_M-pyrifera_M_contig91799.21259.1 ID=prot_M-pyrifera_M_contig91799.21259.1|Name=mRNA_M-pyrifera_M_contig91799.21259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
QTKGTSSFGKRTSKSHVLCRRCGKRSYHIQKSTCASCGFPGAKMRRFNWS
AKALRRRTQGTGRMRFLRSLPRRAKNGFREGTTAKKQTASV*
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mRNA from alignment at M-pyrifera_M_contig91799:492..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91799.21259.1 ID=mRNA_M-pyrifera_M_contig91799.21259.1|Name=mRNA_M-pyrifera_M_contig91799.21259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig91799:492..767+ (Macrocystis pyrifera P11B4 male)
CAGACCAAGGGGACATCATCTTTCGGAAAACGGACGAGCAAGAGCCACGT
GCTCTGCCGTCGCTGTGGAAAGCGCTCCTACCACATCCAAAAGTCCACCT
GCGCGTCTTGTGGATTCCCAGGAGCAAAGATGCGACGCTTCAACTGGAGT
GCCAAGGCTCTGCGCCGCCGCACTCAGGGCACTGGTCGCATGCGCTTCCT
CCGATCCCTCCCACGAAGGGCCAAGAACGGCTTCCGTGAAGGTACCACCG
CAAAGAAGCAAACCGCTTCCGTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91799:492..767+

>mRNA_M-pyrifera_M_contig91799.21259.1 ID=mRNA_M-pyrifera_M_contig91799.21259.1|Name=mRNA_M-pyrifera_M_contig91799.21259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig91799:492..767+ (Macrocystis pyrifera P11B4 male)
CAGACCAAGGGGACATCATCTTTCGGAAAACGGACGAGCAAGAGCCACGT
GCTCTGCCGTCGCTGTGGAAAGCGCTCCTACCACATCCAAAAGTCCACCT
GCGCGTCTTGTGGATTCCCAGGAGCAAAGATGCGACGCTTCAACTGGAGT
GCCAAGGCTCTGCGCCGCCGCACTCAGGGCACTGGTCGCATGCGCTTCCT
CCGATCCCTCCCACGAAGGGCCAAGAACGGCTTCCGTGAAGGTACCACCG
CAAAGAAGCAAACCGCTTCCGTCTAACAGACCAAGGGGACATCATCTTTC
GGAAAACGGACGAGCAAGAGCCACGTGCTCTGCCGTCGCTGTGGAAAGCG
CTCCTACCACATCCAAAAGTCCACCTGCGCGTCTTGTGGATTCCCAGGAG
CAAAGATGCGACGCTTCAACTGGAGTGCCAAGGCTCTGCGCCGCCGCACT
CAGGGCACTGGTCGCATGCGCTTCCTCCGATCCCTCCCACGAAGGGCCAA
GAACGGCTTCCGTGAAGGTACCACCGCAAAGAAGCAAACCGCTTCCGTCT
AA
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