mRNA_M-pyrifera_M_contig91797.21258.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91797.21258.1
Unique NamemRNA_M-pyrifera_M_contig91797.21258.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A7K8LGQ2_9GRUI (ECI2 isomerase (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K8LGQ2_9GRUI)

HSP 1 Score: 185 bits (469), Expect = 3.630e-56
Identity = 99/187 (52.94%), Postives = 128/187 (68.45%), Query Frame = 1
Query:    1 FASGDLSDMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            F +   S+M  M E G  LL+  VG FIDFPKPL+A VNGPAVGI VT+LGLCD+VY+   ATFH+PFSQLGQS E CSSY FP  MG A+A+EMLL   K +AAE   +G+VT +     FQ+++  +    A+LP  SL  +KQL+R   +  LHAVN +E + LK+RW S E +NA++SF +KK
Sbjct:   15 FTNIQPSEMKKMAEDGAVLLKEFVGHFIDFPKPLIAVVNGPAVGICVTVLGLCDIVYASDRATFHSPFSQLGQSPEGCSSYLFPKIMGLAKANEMLLFNKKLTAAEACAQGLVTEVFPDRTFQKEVWARLEAYASLPENSLAVSKQLLRSIEKEKLHAVNSKECEVLKERWLSDECINAIVSFFQKK 201          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A8C4NQP8_DICLA (Enoyl-CoA delta isomerase 2 n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4NQP8_DICLA)

HSP 1 Score: 187 bits (474), Expect = 1.010e-55
Identity = 98/179 (54.75%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   25 MDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            ++ M ++GGELL + V  +IDFPKPL+A VNGPAVG++VT+LGL DLVY+   ATFHTPFSQLGQSAE CSSYTFP  MG A+ASEMLL   K +A +  + G+VT +     FQ ++  +    A LPP SL  +KQL+R   +  LHAVN  EV+ L +RW S E  NAVMSF + K
Sbjct:  116 VEAMAKQGGELLRKYVKAYIDFPKPLIAVVNGPAVGVSVTVLGLFDLVYATERATFHTPFSQLGQSAEGCSSYTFPKMMGNAKASEMLLFNKKLTAVQACELGLVTEVFPDSSFQSEVWTRLKAYAKLPPNSLALSKQLIRSMEKERLHAVNDAEVERLVERWMSDECFNAVMSFFQAK 294          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A8C2Z2L8_CYCLU (Enoyl-CoA delta isomerase 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2Z2L8_CYCLU)

HSP 1 Score: 189 bits (481), Expect = 1.190e-55
Identity = 100/179 (55.87%), Postives = 125/179 (69.83%), Query Frame = 1
Query:   25 MDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            ++ +  RGG+LL + V  +IDFPKPLVA VNGPAVGI+VT+LGL DLVY+   A+FHTPFSQLGQSAE CSSYTFP  MGPA+ASEMLL   K SA +  + G+VT +     FQ ++  K    A LPP SL  +KQL+R   +  LH+VN  EV+ L +RW+S E  NAVMSF + K
Sbjct:  214 VEELARRGGDLLRKYVKAYIDFPKPLVAVVNGPAVGISVTVLGLFDLVYATDRASFHTPFSQLGQSAEGCSSYTFPKIMGPAKASEMLLFNKKLSALQACELGLVTEVFPDSSFQSEVWTKLKAYAKLPPNSLSLSKQLIRSQEKDRLHSVNDAEVELLTERWKSDECFNAVMSFFQAK 392          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A6J3CJN0_AYTFU (enoyl-CoA delta isomerase 2, mitochondrial isoform X1 n=29 Tax=Aves TaxID=8782 RepID=A0A6J3CJN0_AYTFU)

HSP 1 Score: 189 bits (481), Expect = 1.320e-55
Identity = 98/187 (52.41%), Postives = 132/187 (70.59%), Query Frame = 1
Query:    1 FASGDLSDMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            FA+   ++M+ M + G ELL+  V +FIDFPKPL+A VNGPA+GI+VTLLGLCD+VY+   ATFHTPFSQLGQS E CSSY FP  MG A+A+EMLL   K +AA+    G+VT +     FQ+++ E+    A+LP  SL  +KQL+R   +  LHAVN +E + LK+RW S E +NA++SF ++K
Sbjct:  210 FANVKPNEMEKMAKDGAELLKEFVSSFIDFPKPLIAVVNGPAIGISVTLLGLCDIVYASDRATFHTPFSQLGQSPEGCSSYLFPKIMGLAKANEMLLFNKKLTAAQAYAWGLVTEVFPDGTFQKEVWERLKAYASLPKNSLAVSKQLLRSMEKEKLHAVNSKECEVLKERWLSDECLNAIVSFFQRK 396          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A8C4KK67_DRONO (Enoyl-CoA delta isomerase 2 n=3 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4KK67_DRONO)

HSP 1 Score: 190 bits (482), Expect = 1.340e-55
Identity = 98/187 (52.41%), Postives = 130/187 (69.52%), Query Frame = 1
Query:    1 FASGDLSDMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            F + +  + + M + G  LL+  V  FIDFPKPL+A VNGPA+GI+VTLLGLCD+VY+  +ATFHTPFSQLGQS E CSSY FP  MG A+A+EMLL   K +AAE   +G+VT +     FQ+++  +    A+LP  SL  +KQL+RG  +  LHAVN QE + LK+RW S E +NA++SF +KK
Sbjct:  225 FTNAEAGETEKMAKNGAVLLKEFVAHFIDFPKPLIAVVNGPAIGISVTLLGLCDIVYASDTATFHTPFSQLGQSPEGCSSYLFPKIMGLAKANEMLLFNKKLTAAEACAQGLVTEVFPDRTFQKEVWARLKAYASLPKNSLAVSKQLLRGLEKEKLHAVNNQECEVLKERWLSDECLNAIVSFFQKK 411          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A452UWP9_URSMA (Enoyl-CoA delta isomerase 2 n=8 Tax=Ursus TaxID=9639 RepID=A0A452UWP9_URSMA)

HSP 1 Score: 189 bits (481), Expect = 1.560e-55
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   22 DMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            +++    RG  LL   VG FIDFPKPLVA VNGPAVGI+VT+L L DLVY+   ATFHTPFS LGQ+ EACSSYTFP  MGPA+A+EML+ G K +AAE   RG+VT +     FQ+++  +    + LP  +LR +KQ++R H +  LHA+N +E + L++RWQS E MNA+M+FL +K
Sbjct:  224 ELEERARRGAILLRDFVGCFIDFPKPLVAVVNGPAVGISVTILRLFDLVYASDRATFHTPFSHLGQTPEACSSYTFPSLMGPAKAAEMLIFGKKLTAAEACARGLVTEVFPDSTFQKEVWTRLKAYSKLPRNALRISKQMIRNHEKEKLHAINAEESRILQERWQSDECMNAIMNFLSRK 403          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: UPI0012ED2CBF (enoyl-CoA delta isomerase 2, mitochondrial n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED2CBF)

HSP 1 Score: 189 bits (479), Expect = 2.490e-55
Identity = 109/196 (55.61%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 FASG-DLSDM----DGMVE----RGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            + SG DLS+     +G VE    RGG+LL + V  +IDFPKPLVA VNGPAVGI+VT+LGL DL+Y+   ATFHTPFSQLGQSAE CSSYTFP  MGPA+A+EMLL   K SA +  + G+VT +     FQ ++  +    A LPP SL  +KQLVR   R  LHAVN  EV+ LK+RW S E  NAVM+F + K
Sbjct:  197 YCSGNDLSNFTQIPEGGVEESARRGGDLLRKYVKAYIDFPKPLVAVVNGPAVGISVTVLGLFDLIYATDRATFHTPFSQLGQSAEGCSSYTFPKIMGPAKATEMLLFNKKLSAVQACELGLVTEVFPDSSFQSEVWTRLKVYAKLPPKSLSLSKQLVRSVERDRLHAVNDAEVELLKERWTSDECFNAVMTFFQAK 392          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: UPI0018D82F26 (enoyl-CoA delta isomerase 2-like isoform X3 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D82F26)

HSP 1 Score: 189 bits (480), Expect = 2.720e-55
Identity = 101/187 (54.01%), Postives = 125/187 (66.84%), Query Frame = 1
Query:    1 FASGDLSDMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            F S     M      GGELL+R V  FIDFPKPLVA VNGPAVGI VT L LCD+VY+   ATFHTPFS LGQS EACSSY FP  MG A+A+E+LL G K +A E  DRG+VT +     FQ+++++K  + A LP  SLR +K L+RG  R  LH VNK+E + L++RW S+E + A+M F   K
Sbjct:  226 FMSITPDTMKQAAREGGELLQRFVAAFIDFPKPLVAAVNGPAVGIPVTSLALCDVVYATDRATFHTPFSSLGQSPEACSSYLFPQIMGQAKANEVLLFGRKLTAQEAYDRGLVTEVFPDATFQQEIEKKFNEFAKLPRQSLRLSKNLIRGAEREKLHQVNKEECELLEERWTSEECIQAIMDFFASK 412          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: A0A6A5DNX8_PERFL (ACB domain-containing protein n=10 Tax=Percidae TaxID=8165 RepID=A0A6A5DNX8_PERFL)

HSP 1 Score: 188 bits (478), Expect = 3.430e-55
Identity = 101/179 (56.42%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   25 MDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            +D M ++GG+LL   V  +IDFPKPLVA VNGPAVGI+VT+LGL DLVY+   ATFHTPFSQLGQSAE CSSYTFP  MG A+ASEMLL   K +AA+  + G+VT +     FQ ++  +    A LPP SL  +KQL+R   +  LHAVN  EV+ L +RW S E  NAVMSF + K
Sbjct:  215 VDEMAKKGGDLLREYVKAYIDFPKPLVAVVNGPAVGISVTVLGLFDLVYATDRATFHTPFSQLGQSAEGCSSYTFPKIMGNAKASEMLLFNKKLTAAQACELGLVTEVFPDSSFQSEVWSRLKAYAKLPPNSLALSKQLIRSMEKDRLHAVNDAEVERLMERWTSDECFNAVMSFFQAK 393          
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Match: UPI0015A59393 (enoyl-CoA delta isomerase 2 isoform X1 n=2 Tax=Oxyura jamaicensis TaxID=8884 RepID=UPI0015A59393)

HSP 1 Score: 189 bits (479), Expect = 4.310e-55
Identity = 99/187 (52.94%), Postives = 130/187 (69.52%), Query Frame = 1
Query:    1 FASGDLSDMDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYSHPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQDRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHAVNKQEVKALKKRWQSQEFMNAVMSFLEKK 561
            FA+   ++M+ M + G ELL+  V  FIDFPKPL+A VNGPA+GI+VTLLGLCD+VY+   ATFHTPFSQLGQS E CSSY FP  MG A+A+EMLL   K +A E    G+VT +     FQ+++ E+    A+LP  SL  +KQL+R   +  LHAVN QE + LK+RW S E +NA++SF ++K
Sbjct:  231 FANVQPNEMEKMAKDGAELLKEFVNCFIDFPKPLIAVVNGPAIGISVTLLGLCDIVYASDRATFHTPFSQLGQSPEGCSSYLFPKIMGLAKANEMLLFNKKLTADEACAWGLVTEVFPDGTFQKEVWERLKAYASLPKNSLAVSKQLLRSMEKEKLHAVNSQECEVLKERWLSDECLNAIVSFFQRK 417          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91797.21258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K8LGQ2_9GRUI3.630e-5652.94ECI2 isomerase (Fragment) n=2 Tax=Neognathae TaxID... [more]
A0A8C4NQP8_DICLA1.010e-5554.75Enoyl-CoA delta isomerase 2 n=1 Tax=Dicentrarchus ... [more]
A0A8C2Z2L8_CYCLU1.190e-5555.87Enoyl-CoA delta isomerase 2 n=2 Tax=Cyclopterus lu... [more]
A0A6J3CJN0_AYTFU1.320e-5552.41enoyl-CoA delta isomerase 2, mitochondrial isoform... [more]
A0A8C4KK67_DRONO1.340e-5552.41Enoyl-CoA delta isomerase 2 n=3 Tax=Dromaius novae... [more]
A0A452UWP9_URSMA1.560e-5553.89Enoyl-CoA delta isomerase 2 n=8 Tax=Ursus TaxID=96... [more]
UPI0012ED2CBF2.490e-5555.61enoyl-CoA delta isomerase 2, mitochondrial n=1 Tax... [more]
UPI0018D82F262.720e-5554.01enoyl-CoA delta isomerase 2-like isoform X3 n=5 Ta... [more]
A0A6A5DNX8_PERFL3.430e-5556.42ACB domain-containing protein n=10 Tax=Percidae Ta... [more]
UPI0015A593934.310e-5552.94enoyl-CoA delta isomerase 2 isoform X1 n=2 Tax=Oxy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91797contigM-pyrifera_M_contig91797:212..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score192.6
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog29073.XP_008691072.1
Preferred nameECI2
KEGG rclassRC01078
KEGG koko:K13239
KEGG ReactionR04756
KEGG Pathwayko00071,ko04146,map00071,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004165,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0031981,GO:0032787,GO:0033036,GO:0033365,GO:0033540,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
EggNOG free text desc.enoyl-CoA delta isomerase 2
EggNOG OGs38F2P@33154,3B9XG@33208,3D1AN@33213,3EHG1@33554,3J8U2@40674,47Z2D@7711,48W73@7742,COG1024@1,COG4281@1,KOG0016@2759,KOG0817@2759
EC5.3.3.8
COG Functional cat.I
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size564
Cds size540
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.7292998-CDS-M-pyrifera_M_contig91797:211..7511622816830.7292998-CDS-M-pyrifera_M_contig91797:211..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91797 212..751 -
1692278203.8192725-CDS-M-pyrifera_M_contig91797:211..7511692278203.8192725-CDS-M-pyrifera_M_contig91797:211..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91797 212..751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.7871952-UTR-M-pyrifera_M_contig91797:751..7751622816830.7871952-UTR-M-pyrifera_M_contig91797:751..775Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91797 752..775 -
1692278203.8369417-UTR-M-pyrifera_M_contig91797:751..7751692278203.8369417-UTR-M-pyrifera_M_contig91797:751..775Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91797 752..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91797.21258.1prot_M-pyrifera_M_contig91797.21258.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91797 212..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91797.21258.1

>prot_M-pyrifera_M_contig91797.21258.1 ID=prot_M-pyrifera_M_contig91797.21258.1|Name=mRNA_M-pyrifera_M_contig91797.21258.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
MDGMVERGGELLERVVGTFIDFPKPLVAGVNGPAVGIAVTLLGLCDLVYS
HPSATFHTPFSQLGQSAEACSSYTFPLAMGPARASEMLLLGTKYSAAEMQ
DRGIVTALLDADQFQEQLQEKAAKVAALPPGSLRATKQLVRGHHRHTLHA
VNKQEVKALKKRWQSQEFMNAVMSFLEKK*
back to top

mRNA from alignment at M-pyrifera_M_contig91797:212..775-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91797.21258.1 ID=mRNA_M-pyrifera_M_contig91797.21258.1|Name=mRNA_M-pyrifera_M_contig91797.21258.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig91797:212..775- (Macrocystis pyrifera P11B4 male)
TTTGCAAGCGGAGACCTGTCTGACATGGATGGGATGGTGGAGCGGGGAGG GGAGCTGCTGGAGCGAGTGGTGGGGACTTTCATCGACTTCCCAAAGCCTC TGGTGGCTGGCGTGAACGGGCCAGCGGTGGGAATTGCAGTGACTCTTCTG GGTCTCTGTGACTTGGTCTATTCCCACCCCAGCGCCACCTTCCACACTCC TTTCTCTCAGCTGGGACAGAGCGCGGAAGCGTGCTCTTCCTACACCTTCC CACTCGCCATGGGGCCCGCCAGAGCCAGCGAAATGCTCCTGTTGGGCACA AAGTACTCGGCTGCCGAAATGCAGGATCGAGGCATCGTCACAGCACTCCT CGACGCAGACCAGTTCCAGGAACAGCTCCAAGAAAAGGCCGCTAAGGTCG CTGCCCTGCCCCCAGGCTCCCTCCGCGCCACCAAGCAGCTCGTCAGGGGA CACCACAGACACACGCTCCACGCCGTCAACAAGCAGGAGGTCAAGGCGCT CAAGAAACGCTGGCAGTCCCAAGAGTTCATGAACGCCGTCATGAGCTTCC TCGAGAAAAAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91797:212..775-

>mRNA_M-pyrifera_M_contig91797.21258.1 ID=mRNA_M-pyrifera_M_contig91797.21258.1|Name=mRNA_M-pyrifera_M_contig91797.21258.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig91797:212..775- (Macrocystis pyrifera P11B4 male)
ATGGATGGGATGGTGGAGCGGGGAGGGGAGCTGCTGGAGCGAGTGGTGGG
GACTTTCATCGACTTCCCAAAGCCTCTGGTGGCTGGCGTGAACGGGCCAG
CGGTGGGAATTGCAGTGACTCTTCTGGGTCTCTGTGACTTGGTCTATTCC
CACCCCAGCGCCACCTTCCACACTCCTTTCTCTCAGCTGGGACAGAGCGC
GGAAGCGTGCTCTTCCTACACCTTCCCACTCGCCATGGGGCCCGCCAGAG
CCAGCGAAATGCTCCTGTTGGGCACAAAGTACTCGGCTGCCGAAATGCAG
GATCGAGGCATCGTCACAGCACTCCTCGACGCAGACCAGTTCCAGGAACA
GCTCCAAGAAAAGGCCGCTAAGGTCGCTGCCCTGCCCCCAGGCTCCCTCC
GCGCCACCAAGCAGCTCGTCAGGGGACACCACAGACACACGCTCCACGCC
GTCAACAAGCAGGAGGTCAAGGCGCTCAAGAAACGCTGGCAGTCCCAAGA
GTTCATGAACGCCGTCATGAGCTTCCTCGAGAAAAAGTAGATGGATGGGA
TGGTGGAGCGGGGAGGGGAGCTGCTGGAGCGAGTGGTGGGGACTTTCATC
GACTTCCCAAAGCCTCTGGTGGCTGGCGTGAACGGGCCAGCGGTGGGAAT
TGCAGTGACTCTTCTGGGTCTCTGTGACTTGGTCTATTCCCACCCCAGCG
CCACCTTCCACACTCCTTTCTCTCAGCTGGGACAGAGCGCGGAAGCGTGC
TCTTCCTACACCTTCCCACTCGCCATGGGGCCCGCCAGAGCCAGCGAAAT
GCTCCTGTTGGGCACAAAGTACTCGGCTGCCGAAATGCAGGATCGAGGCA
TCGTCACAGCACTCCTCGACGCAGACCAGTTCCAGGAACAGCTCCAAGAA
AAGGCCGCTAAGGTCGCTGCCCTGCCCCCAGGCTCCCTCCGCGCCACCAA
GCAGCTCGTCAGGGGACACCACAGACACACGCTCCACGCCGTCAACAAGC
AGGAGGTCAAGGCGCTCAAGAAACGCTGGCAGTCCCAAGAGTTCATGAAC
GCCGTCATGAGCTTCCTCGAGAAAAAGTAG
back to top