mRNA_M-pyrifera_M_contig91796.21257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91796.21257.1
Unique NamemRNA_M-pyrifera_M_contig91796.21257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A196SBX3_BLAHN (Ion channel regulatory protein UNC-93 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SBX3_BLAHN)

HSP 1 Score: 71.6 bits (174), Expect = 2.970e-12
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   34 KPSSPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFALGLVI---TEYWINFAILGGIYLLSILCLFILNNSVRSLD 339
            K ++P    +   + V+ + GD+VWESQ PA+LQS  F+ ++ +R+AAM+N KMWQSLG+  QF LG++    ++  +   IL  + ++  + L IL+  V  LD
Sbjct:  357 KTTNPADLPLALTMVVVLSAGDAVWESQPPAILQS--FYGKDSERNAAMANYKMWQSLGWCAQFVLGVIFNKDSDLTMKAIILLSLLVVGYIFLVILDKRVAKLD 459          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A196SDS0_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDS0_BLAHN)

HSP 1 Score: 70.5 bits (171), Expect = 7.330e-12
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   55 YTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFALGLVI 243
            Y VV    +L A GD+VWESQ PA+LQS  F+  +R+R+AA++NLKMWQS+G  +QF +G+ +
Sbjct:  326 YVVVLTTILLLACGDAVWESQPPAILQS--FYGLDRERNAAIANLKMWQSIGNVIQFVIGITL 386          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: UPI0007118DCF (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007118DCF)

HSP 1 Score: 66.2 bits (160), Expect = 2.110e-10
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   10 LFYLTDYLKPSSPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFALGLVITE---YWINFAILGGIYLLSILCLFILNNSVRSLD 339
            L+ + D  K    L  T+V  +  L + GD+VWESQ PA+LQS  F+  +R+R+AAM+N KMWQS+G+  Q+A G   +E     +   IL G+ ++  + L IL+     LD
Sbjct:  253 LYKIPDDSKNVVDLVLTIV--MVCLLSGGDAVWESQPPAILQS--FYGLDRERNAAMANYKMWQSIGWCAQYAFGAFFSETKYVLMKSCILLGLLVVGYIILVILDRRYAKLD 361          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: D8M7M5_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7M5_BLAHO)

HSP 1 Score: 65.9 bits (159), Expect = 3.060e-10
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   43 SPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFALGLV 240
            S L   ++  + V+ + GD+VWESQ PA+LQS  F+  + +R+AAM+N KMWQSLG+  QF +G V
Sbjct:  308 SVLDLVLIIIMVVILSAGDAVWESQPPAILQS--FYGLDSERNAAMANYKMWQSLGWCAQFVIGAV 371          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A0G4HL30_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HL30_9ALVE)

HSP 1 Score: 63.5 bits (153), Expect = 8.470e-10
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   55 YTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRD--AAMSNLKMWQSLGFAVQFALGL 237
            +   FGL  L ALGDS +ESQ  AVLQ+  FF  E ++   AA++N+K+WQSLGFA+QFAL L
Sbjct:   58 FVTFFGLVALLALGDSAYESQEVAVLQN--FFQTENEQKGLAAVANVKVWQSLGFAMQFALSL 118          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A0G4IB60_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IB60_9ALVE)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-9
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   31 LKPSSPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRD--AAMSNLKMWQSLGFAVQFA 228
            LK      +T  FGL+ L ALG+S  ESQ+ AVLQS  FF  E ++   AA++N+K+WQSLGFAVQFA
Sbjct:  610 LKEPESWQFTAFFGLSALLALGESAHESQSVAVLQS--FFQTENEQKGLAAVANVKVWQSLGFAVQFA 675          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A813DS89_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DS89_POLGL)

HSP 1 Score: 63.9 bits (154), Expect = 1.510e-9
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   64 VFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFALGLVITEYWINFAILGGIYL----LSILCLFILNNSVRSLD 339
            +F LA +FA GDS +E+  P  LQ+  F+       AAM+N K+WQSLGFAVQF +G+ + ++     + GG+ L    LS+LC+ IL+  V S+D
Sbjct:  389 IFALAAVFAGGDSFFEAGPPMTLQT--FYAGTDKVVAAMANYKLWQSLGFAVQFFIGVALKDHP---QVRGGLLLALLGLSLLCVMILDRCVASVD 479          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A7S2VJ05_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VJ05_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-7
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   55 YTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFA 228
            Y   F    L A+GD+V+ESQ PA+LQS   F +ER    AM+NLK+WQS GFA Q+A
Sbjct:    5 YAAPFLCICLAAIGDAVYESQIPAMLQS--LFQDER-MAPAMANLKLWQSFGFAAQYA 59          
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Match: A0A7S1S5C4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S5C4_ALECA)

HSP 1 Score: 50.1 bits (118), Expect = 1.890e-5
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   31 LKPSSPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFFPEERDRDAAMSNLKMWQSLGFAVQFAL 231
            L+   P     VF LAVLFA+GD++ E    A LQ+  +F        AM+N K+WQSLG+A QFAL
Sbjct:   25 LQAPRPAHVLAVFLLAVLFAVGDALLECGPVATLQN--YFLGGPAAVPAMANAKLWQSLGYAAQFAL 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91796.21257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A196SBX3_BLAHN2.970e-1238.10Ion channel regulatory protein UNC-93 n=1 Tax=Blas... [more]
A0A196SDS0_BLAHN7.330e-1252.38Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
UPI0007118DCF2.110e-1038.94hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
D8M7M5_BLAHO3.060e-1048.48Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A0G4HL30_9ALVE8.470e-1055.56Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A0G4IB60_9ALVE1.160e-954.41Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A813DS89_POLGL1.510e-942.71Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2VJ05_9DINO1.170e-753.45Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S1S5C4_ALECA1.890e-546.27Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91796contigM-pyrifera_M_contig91796:3..341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.6974669-CDS-M-pyrifera_M_contig91796:2..3411622816830.6974669-CDS-M-pyrifera_M_contig91796:2..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91796 3..341 +
1692278203.8077257-CDS-M-pyrifera_M_contig91796:2..3411692278203.8077257-CDS-M-pyrifera_M_contig91796:2..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91796 3..341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91796.21257.1prot_M-pyrifera_M_contig91796.21257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91796 3..341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91796.21257.1

>prot_M-pyrifera_M_contig91796.21257.1 ID=prot_M-pyrifera_M_contig91796.21257.1|Name=mRNA_M-pyrifera_M_contig91796.21257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
LITLFYLTDYLKPSSPLTYTVVFGLAVLFALGDSVWESQAPAVLQSPSFF
PEERDRDAAMSNLKMWQSLGFAVQFALGLVITEYWINFAILGGIYLLSIL
CLFILNNSVRSLD
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mRNA from alignment at M-pyrifera_M_contig91796:3..341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91796.21257.1 ID=mRNA_M-pyrifera_M_contig91796.21257.1|Name=mRNA_M-pyrifera_M_contig91796.21257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig91796:3..341+ (Macrocystis pyrifera P11B4 male)
CTCATCACCCTCTTCTACCTCACAGACTACCTCAAGCCATCCTCCCCACT CACCTACACCGTCGTCTTTGGACTCGCAGTGCTATTCGCACTCGGAGATA GCGTCTGGGAGTCGCAAGCTCCCGCAGTGCTCCAATCGCCGTCCTTCTTC CCAGAGGAGAGGGACAGAGACGCGGCAATGTCCAACCTCAAAATGTGGCA GAGCTTAGGCTTTGCCGTCCAATTCGCACTGGGGCTCGTCATCACAGAGT ACTGGATCAACTTTGCCATCCTCGGAGGCATCTACCTCCTCTCCATCCTC TGCCTCTTCATCCTCAACAACTCGGTCAGGTCTCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91796:3..341+

>mRNA_M-pyrifera_M_contig91796.21257.1 ID=mRNA_M-pyrifera_M_contig91796.21257.1|Name=mRNA_M-pyrifera_M_contig91796.21257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig91796:3..341+ (Macrocystis pyrifera P11B4 male)
CTCATCACCCTCTTCTACCTCACAGACTACCTCAAGCCATCCTCCCCACT
CACCTACACCGTCGTCTTTGGACTCGCAGTGCTATTCGCACTCGGAGATA
GCGTCTGGGAGTCGCAAGCTCCCGCAGTGCTCCAATCGCCGTCCTTCTTC
CCAGAGGAGAGGGACAGAGACGCGGCAATGTCCAACCTCAAAATGTGGCA
GAGCTTAGGCTTTGCCGTCCAATTCGCACTGGGGCTCGTCATCACAGAGT
ACTGGATCAACTTTGCCATCCTCGGAGGCATCTACCTCCTCTCCATCCTC
TGCCTCTTCATCCTCAACAACTCGGTCAGGTCTCTCGACCTCATCACCCT
CTTCTACCTCACAGACTACCTCAAGCCATCCTCCCCACTCACCTACACCG
TCGTCTTTGGACTCGCAGTGCTATTCGCACTCGGAGATAGCGTCTGGGAG
TCGCAAGCTCCCGCAGTGCTCCAATCGCCGTCCTTCTTCCCAGAGGAGAG
GGACAGAGACGCGGCAATGTCCAACCTCAAAATGTGGCAGAGCTTAGGCT
TTGCCGTCCAATTCGCACTGGGGCTCGTCATCACAGAGTACTGGATCAAC
TTTGCCATCCTCGGAGGCATCTACCTCCTCTCCATCCTCTGCCTCTTCAT
CCTCAACAACTCGGTCAGGTCTCTCGAC
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