mRNA_M-pyrifera_M_contig91787.21255.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91787.21255.1
Unique NamemRNA_M-pyrifera_M_contig91787.21255.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A2E7K6L5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K6L5_9PLAN)

HSP 1 Score: 506 bits (1302), Expect = 3.920e-173
Identity = 251/258 (97.29%), Postives = 256/258 (99.22%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLLT 774
            RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFR+EGWS+KQLIRAIVL+ TYQLS+FCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHL HNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHD+DQALASEISQEELRRVAVWATLCQGLLT
Sbjct:  527 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRSEGWSIKQLIRAIVLSRTYQLSTFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLSHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDVDQALASEISQEELRRVAVWATLCQGLLT 784
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A518FWR5_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FWR5_9PLAN)

HSP 1 Score: 449 bits (1155), Expect = 5.460e-151
Identity = 218/257 (84.82%), Postives = 237/257 (92.22%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLL 771
            RIWL LFGQALVRTPDDFGVYGERPTHP+LLDHLATRFRTEGWS+KQLIR IVL+HTYQLSSFCD +IL+ DPENRLLCRHNRRRLDAESLRDSILA SGQLNREP  GSAIANVDELVNK  NLHLPHNHRSIYLCMLRHS+PPELSAFDLPDSTKPVG+RNE+TLPTQSLFLLNSPFLVEQAD FAK+VL+D EL+++ R+HL YRRALNR+P S EL+RAL L+ D+DQAL SEISQ +LRRVAVWATLCQ LL
Sbjct:  527 RIWLQLFGQALVRTPDDFGVYGERPTHPQLLDHLATRFRTEGWSIKQLIREIVLSHTYQLSSFCDEQILDTDPENRLLCRHNRRRLDAESLRDSILAVSGQLNREPGLGSAIANVDELVNKAGNLHLPHNHRSIYLCMLRHSEPPELSAFDLPDSTKPVGKRNETTLPTQSLFLLNSPFLVEQADSFAKDVLADPELNDTDRVHLVYRRALNRSPESSELQRALKLLEDVDQALESEISQADLRRVAVWATLCQALL 783
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A517RM79_9PLAN (Planctomycete cytochrome C n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517RM79_9PLAN)

HSP 1 Score: 422 bits (1085), Expect = 2.050e-140
Identity = 204/257 (79.38%), Postives = 232/257 (90.27%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLL 771
            RIWLHLFGQALVRTPDDFG+YGERPTHP+LLDHLATRFRTEGWS+KQLIR+IVL+ TYQLSSFCD  IL+ADPEN+LLCRHNRRRLDAESLRDSILAASGQLNREP  GS+IA+VDELVNK  NLHLP NHRSIYLCM+RHS+PPELS+FDLPDSTKPVG+RNE+TLPTQSLFL+NS FL+EQ+  FAK++L + +L++S RIHL YRRALNR P S EL RALALI D++ AL +EISQ++LRR  VWATLCQ LL
Sbjct:  532 RIWLHLFGQALVRTPDDFGIYGERPTHPQLLDHLATRFRTEGWSIKQLIRSIVLSRTYQLSSFCDDLILDADPENKLLCRHNRRRLDAESLRDSILAASGQLNREPGLGSSIAHVDELVNKAGNLHLPDNHRSIYLCMMRHSEPPELSSFDLPDSTKPVGKRNETTLPTQSLFLINSHFLIEQSQLFAKDILLNPKLNDSQRIHLVYRRALNRVPESSELSRALALIQDVNTALKTEISQDKLRRQTVWATLCQALL 788
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A517VQX9_9PLAN (Planctomycete cytochrome C n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQX9_9PLAN)

HSP 1 Score: 410 bits (1053), Expect = 1.280e-135
Identity = 196/258 (75.97%), Postives = 227/258 (87.98%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLLT 774
            RIWLHL+GQALVRTPDDFGVYGERPTHP+LLDHLATRFR+EGWS+KQ IR IVL+ TYQLSSFCD +IL+ DPENR  CRHNRRRLDAESLRD+ILA SGQLN EP RGSAIANVDELVNK SNLH P NHRSIYLC+LRHS+PPELSAFDLPDSTKPVG+RNE+TLPTQSLFL+NS FL++QA +FAK++L+ S+LDE GR+   YRRALNRAP+  EL+R+L L+ ++D  L  EISQ+ +R+V VWATLCQ LL+
Sbjct:  532 RIWLHLYGQALVRTPDDFGVYGERPTHPQLLDHLATRFRSEGWSIKQFIRNIVLSRTYQLSSFCDEDILDFDPENRFHCRHNRRRLDAESLRDTILAVSGQLNWEPGRGSAIANVDELVNKASNLHQPSNHRSIYLCLLRHSEPPELSAFDLPDSTKPVGKRNETTLPTQSLFLINSSFLIDQAQYFAKDILAISKLDERGRVIQVYRRALNRAPSDSELQRSLTLLKNVDSELKEEISQDAIRQVTVWATLCQALLS 789
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A517VKK7_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VKK7_9PLAN)

HSP 1 Score: 408 bits (1049), Expect = 1.800e-135
Identity = 198/258 (76.74%), Postives = 227/258 (87.98%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLLT 774
            RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFR+E WS+KQLIR+IVL+ TYQ SSFC+A++L+ADPEN+LLCRH+RRRLDAESLRDSILAASGQLN  P  GS+IANVDELVN   NLHLP NHRSIYLCMLRHS+P +L+AFDLPDSTKPVG+RNE+TLPTQSLFLLNS FL+EQ+  FA+ +L+D +L ES RIHLAY+RAL R P S EL+RAL L+ D+D +L SEISQ E RR+ VW+TLCQ LLT
Sbjct:  493 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRSEDWSIKQLIRSIVLSRTYQQSSFCEADVLDADPENKLLCRHSRRRLDAESLRDSILAASGQLNPNPGLGSSIANVDELVNTAGNLHLPSNHRSIYLCMLRHSEPAQLAAFDLPDSTKPVGQRNETTLPTQSLFLLNSDFLIEQSQAFARAILTDPQLSESERIHLAYQRALTRGPESSELQRALTLLQDLDISLQSEISQTEQRRLTVWSTLCQALLT 750
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A6CD54_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CD54_9PLAN)

HSP 1 Score: 398 bits (1023), Expect = 4.000e-131
Identity = 191/258 (74.03%), Postives = 225/258 (87.21%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLLT 774
            RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFR+EGWS+KQLIR+IVL+ TYQ SSFC+A++ +ADPEN+LLCRHNRRRLDAESLRDSILA SGQLN +P  GS+IANVDELVN   NLHLP NHRSIYLCMLRHS+P +L+AFDLPDSTKPVG+RNE+TLPTQSLFLLNS FL+EQ+  FA++VL+D +L E+ RI+L Y+R   R P S EL+R L L+ D+D++L +E+SQ E RR+ VW+TLCQ LLT
Sbjct:  532 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRSEGWSIKQLIRSIVLSRTYQQSSFCEADVRDADPENKLLCRHNRRRLDAESLRDSILATSGQLNPDPGLGSSIANVDELVNTAGNLHLPSNHRSIYLCMLRHSEPAQLAAFDLPDSTKPVGQRNETTLPTQSLFLLNSDFLIEQSQAFARDVLTDPKLKETERINLVYQRTFKRLPESFELQRTLTLLQDLDRSLNTEVSQTEQRRLIVWSTLCQALLT 789
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A3B9CS59_9PLAN (PSD1 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9CS59_9PLAN)

HSP 1 Score: 286 bits (732), Expect = 1.050e-93
Identity = 146/258 (56.59%), Postives = 183/258 (70.93%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSN-LHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLL 771
            R+W HL GQ +V TPDDFG+YG RPTHPELLDHLATRFR  GWS+K+LIR IVLT TY L S C  EI   DP N  L RHNRRRLDAE++RDSIL ASG+LN EP  GS +  +D  VN+V + +H P NHRSIYLCMLR+S PP+L+AFDLPD+ +  GRR+ +  PTQSL+LLNS FLV QA+  A  ++ +++ DE  R+  AY R L R P+  E+ R+LA +  I+  LA + S    R+   W++LCQ LL
Sbjct:   27 RVWHHLMGQPIVSTPDDFGIYGARPTHPELLDHLATRFRAGGWSIKRLIRGIVLTRTYGLDSNCSPEIRSVDPNNNWLARHNRRRLDAEAIRDSILRASGELNTEPGIGSDVQFLDIQVNQVGDTIHKPSNHRSIYLCMLRNSPPPDLAAFDLPDALEVKGRRDVTLRPTQSLYLLNSEFLVNQAEILATRLIDETDNDERERVIRAYERVLVRTPSEDEINRSLAFVRAIEADLAVDASD---RKHQSWSSLCQALL 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A4P5YWG3_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YWG3_9BACT)

HSP 1 Score: 299 bits (765), Expect = 1.540e-92
Identity = 149/262 (56.87%), Postives = 192/262 (73.28%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDES-GRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQE----ELRRVAVWATLCQGLL 771
            R+WLHLFG  LVRTPDDFGV+G+RPTHPELLDHLA R   +GWS+K+LIRA+VL+ TYQL+S    ++L+ADP+N LLCRH+RRRLDAE+LRDS+L AS QL+R+P +GS I ++D L+NK+ +LH P  HRS+YLC+LR+S PP+L AF+LPD  +  G+R+ +TLP+QSLFLLNSPFLVEQ+   A  VL  S  D+   RI  AY  AL+R P + E++RA AL+ ++   L S  S      E   V  WA  CQ LL
Sbjct:  554 RVWLHLFGHGLVRTPDDFGVFGDRPTHPELLDHLAARLVADGWSLKRLIRALVLSRTYQLASHAPPQLLKADPDNELLCRHSRRRLDAEALRDSVLVASDQLDRKPGQGSLIQHMDVLINKLGSLHRPSPHRSVYLCLLRNSMPPDLLAFNLPDGLRVTGKRDATTLPSQSLFLLNSPFLVEQSRRLAARVLDGSAADDDPARIRRAYEYALSREPTAPEIQRATALLREVTGDLQSSASASAAAPEKNPVTAWAVFCQALL 815
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A4R7SRD7_9BACT (Cytochrome c n=1 Tax=Prosthecobacter fusiformis TaxID=48464 RepID=A0A4R7SRD7_9BACT)

HSP 1 Score: 294 bits (752), Expect = 6.200e-91
Identity = 144/257 (56.03%), Postives = 189/257 (73.54%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLL 771
            RIW HLFG+ LVRTPDDFGVYGERPTHPELLDHLATRF  +GWSVK++IR +V++ TYQ  S C+  + +ADP+N L  RHNRRRLDAE+LRD+IL  SG LN +P +GS I   D L+N++ +LH P  HRS+YL MLR+S PPEL+ F+LPD T  VG+R+ STLPTQSL+LLN+ FLV++A+ FA+ VL+D+  +++ R+ LAYR  L R P + E  RA+  + +ID    S  + ++ R  + WA  CQ LL
Sbjct:  523 RIWQHLFGEGLVRTPDDFGVYGERPTHPELLDHLATRFVRQGWSVKRMIRDLVMSRTYQQDSICEPGVGKADPDNLLHARHNRRRLDAEALRDTILKVSGGLNAQPGQGSLIQGRDVLINELGHLHQPSQHRSVYLLMLRNSMPPELTPFNLPDGTAVVGKRDVSTLPTQSLYLLNNGFLVKEAERFAERVLTDAGDEDASRVRLAYRLGLGRDPTAEESARAMEFMREIDLNAVSAEADDQKRLKSTWAMFCQALL 779
[Close]
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Match: A0A517YDQ5_9BACT (Planctomycete cytochrome C n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YDQ5_9BACT)

HSP 1 Score: 293 bits (749), Expect = 1.430e-90
Identity = 150/257 (58.37%), Postives = 184/257 (71.60%), Query Frame = 1 
Query:    1 RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIRAIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASGQLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAFDLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDESGRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWATLCQGLL 771
            RIWL LFG  +V TPDDFGVYGERPTHPELLDHLATR +   WS+KQLIRAIVL+ TYQL+S  DA+++E DP+NRLL RH+RRRLDAE LRDS+L  SGQL  +PA GS + + D LVN   NLH P NHRSIYLC LR S PPEL+AFDLPD    +G+R+ ST+P Q+L L NSPF++EQ++ FA+ VLS++   E GR+  A+ RAL R PN  E+ +AL L+   +  LA E           WA+ CQ LL
Sbjct:  523 RIWLQLFGAGIVTTPDDFGVYGERPTHPELLDHLATRLKAGNWSIKQLIRAIVLSRTYQLASDADAKLIEGDPQNRLLTRHSRRRLDAEMLRDSMLQVSGQLQLQPAEGSLVRHRDILVNLAGNLHQPSNHRSIYLCYLRSSPPPELAAFDLPDFASVIGQRDVSTVPNQALHLYNSPFVIEQSNHFAQWVLSETASAE-GRLRSAWERALGREPNQAEIAKALELVRLTETELADEDK--------AWASFCQALL 770
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91787.21255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K6L5_9PLAN3.920e-17397.29Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518FWR5_9PLAN5.460e-15184.82Planctomycete cytochrome C n=2 Tax=Gimesia panaree... [more]
A0A517RM79_9PLAN2.050e-14079.38Planctomycete cytochrome C n=3 Tax=Gimesia TaxID=1... [more]
A0A517VQX9_9PLAN1.280e-13575.97Planctomycete cytochrome C n=3 Tax=Gimesia aquarii... [more]
A0A517VKK7_9PLAN1.800e-13576.74Planctomycete cytochrome C n=2 Tax=Gimesia algae T... [more]
A6CD54_9PLAN4.000e-13174.03Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A3B9CS59_9PLAN1.050e-9356.59PSD1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A4P5YWG3_9BACT1.540e-9256.87Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A4R7SRD7_9BACT6.200e-9156.03Cytochrome c n=1 Tax=Prosthecobacter fusiformis Ta... [more]
A0A517YDQ5_9BACT1.430e-9058.37Planctomycete cytochrome C n=1 Tax=Anatilimnocola ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91787contigM-pyrifera_M_contig91787:1..774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score401.0
Seed ortholog evalue4.3e-109
Seed eggNOG ortholog344747.PM8797T_14469
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome c
EggNOG OGsCOG2010@1,COG2010@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size774
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.6094542-CDS-M-pyrifera_M_contig91787:0..7741622816830.6094542-CDS-M-pyrifera_M_contig91787:0..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91787 1..774 -
1692278203.7628677-CDS-M-pyrifera_M_contig91787:0..7741692278203.7628677-CDS-M-pyrifera_M_contig91787:0..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91787 1..774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91787.21255.1prot_M-pyrifera_M_contig91787.21255.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91787 1..774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91787.21255.1

>prot_M-pyrifera_M_contig91787.21255.1 ID=prot_M-pyrifera_M_contig91787.21255.1|Name=mRNA_M-pyrifera_M_contig91787.21255.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp
RIWLHLFGQALVRTPDDFGVYGERPTHPELLDHLATRFRTEGWSVKQLIR
AIVLTHTYQLSSFCDAEILEADPENRLLCRHNRRRLDAESLRDSILAASG
QLNREPARGSAIANVDELVNKVSNLHLPHNHRSIYLCMLRHSDPPELSAF
DLPDSTKPVGRRNESTLPTQSLFLLNSPFLVEQADWFAKEVLSDSELDES
GRIHLAYRRALNRAPNSGELERALALIHDIDQALASEISQEELRRVAVWA
TLCQGLLT
back to top

mRNA from alignment at M-pyrifera_M_contig91787:1..774-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91787.21255.1 ID=mRNA_M-pyrifera_M_contig91787.21255.1|Name=mRNA_M-pyrifera_M_contig91787.21255.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig91787:1..774- (Macrocystis pyrifera P11B4 male)
CGCATCTGGCTGCATCTGTTTGGTCAGGCACTGGTCCGCACTCCCGACGA
CTTCGGAGTCTATGGAGAACGCCCCACGCACCCGGAACTGCTCGATCACC
TGGCGACCCGCTTTCGCACGGAAGGCTGGTCGGTCAAACAGCTGATTCGC
GCGATCGTGCTCACTCATACCTATCAGCTCAGCAGTTTCTGCGATGCAGA
AATTCTCGAAGCCGATCCAGAGAATCGCCTCCTCTGCCGACACAACCGTC
GACGTCTGGATGCGGAATCACTCCGCGACAGCATTCTGGCAGCCAGTGGT
CAGCTCAATCGGGAACCGGCACGGGGCTCAGCGATTGCCAACGTCGACGA
ACTGGTCAACAAGGTCAGCAATCTGCATCTGCCTCACAACCATCGTAGTA
TCTACCTCTGCATGCTCCGTCATTCAGATCCCCCTGAACTCTCTGCATTC
GATCTTCCTGATTCCACCAAACCGGTAGGCCGAAGAAACGAATCCACACT
GCCGACACAGAGCCTGTTCCTGCTCAACAGTCCGTTCCTGGTCGAGCAGG
CAGACTGGTTTGCCAAAGAGGTGCTCTCCGATTCTGAACTCGATGAGAGT
GGTCGGATTCATCTGGCTTATCGCCGTGCTTTGAACCGCGCTCCAAACTC
CGGAGAGCTCGAGCGGGCTCTGGCATTGATCCATGATATAGACCAGGCAC
TCGCATCAGAAATCTCACAAGAGGAACTCCGGCGGGTTGCAGTCTGGGCC
ACACTCTGTCAGGGACTGCTGACA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91787:1..774-

>mRNA_M-pyrifera_M_contig91787.21255.1 ID=mRNA_M-pyrifera_M_contig91787.21255.1|Name=mRNA_M-pyrifera_M_contig91787.21255.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1548bp|location=Sequence derived from alignment at M-pyrifera_M_contig91787:1..774- (Macrocystis pyrifera P11B4 male)
CGCATCTGGCTGCATCTGTTTGGTCAGGCACTGGTCCGCACTCCCGACGA
CTTCGGAGTCTATGGAGAACGCCCCACGCACCCGGAACTGCTCGATCACC
TGGCGACCCGCTTTCGCACGGAAGGCTGGTCGGTCAAACAGCTGATTCGC
GCGATCGTGCTCACTCATACCTATCAGCTCAGCAGTTTCTGCGATGCAGA
AATTCTCGAAGCCGATCCAGAGAATCGCCTCCTCTGCCGACACAACCGTC
GACGTCTGGATGCGGAATCACTCCGCGACAGCATTCTGGCAGCCAGTGGT
CAGCTCAATCGGGAACCGGCACGGGGCTCAGCGATTGCCAACGTCGACGA
ACTGGTCAACAAGGTCAGCAATCTGCATCTGCCTCACAACCATCGTAGTA
TCTACCTCTGCATGCTCCGTCATTCAGATCCCCCTGAACTCTCTGCATTC
GATCTTCCTGATTCCACCAAACCGGTAGGCCGAAGAAACGAATCCACACT
GCCGACACAGAGCCTGTTCCTGCTCAACAGTCCGTTCCTGGTCGAGCAGG
CAGACTGGTTTGCCAAAGAGGTGCTCTCCGATTCTGAACTCGATGAGAGT
GGTCGGATTCATCTGGCTTATCGCCGTGCTTTGAACCGCGCTCCAAACTC
CGGAGAGCTCGAGCGGGCTCTGGCATTGATCCATGATATAGACCAGGCAC
TCGCATCAGAAATCTCACAAGAGGAACTCCGGCGGGTTGCAGTCTGGGCC
ACACTCTGTCAGGGACTGCTGACACGCATCTGGCTGCATCTGTTTGGTCA
GGCACTGGTCCGCACTCCCGACGACTTCGGAGTCTATGGAGAACGCCCCA
CGCACCCGGAACTGCTCGATCACCTGGCGACCCGCTTTCGCACGGAAGGC
TGGTCGGTCAAACAGCTGATTCGCGCGATCGTGCTCACTCATACCTATCA
GCTCAGCAGTTTCTGCGATGCAGAAATTCTCGAAGCCGATCCAGAGAATC
GCCTCCTCTGCCGACACAACCGTCGACGTCTGGATGCGGAATCACTCCGC
GACAGCATTCTGGCAGCCAGTGGTCAGCTCAATCGGGAACCGGCACGGGG
CTCAGCGATTGCCAACGTCGACGAACTGGTCAACAAGGTCAGCAATCTGC
ATCTGCCTCACAACCATCGTAGTATCTACCTCTGCATGCTCCGTCATTCA
GATCCCCCTGAACTCTCTGCATTCGATCTTCCTGATTCCACCAAACCGGT
AGGCCGAAGAAACGAATCCACACTGCCGACACAGAGCCTGTTCCTGCTCA
ACAGTCCGTTCCTGGTCGAGCAGGCAGACTGGTTTGCCAAAGAGGTGCTC
TCCGATTCTGAACTCGATGAGAGTGGTCGGATTCATCTGGCTTATCGCCG
TGCTTTGAACCGCGCTCCAAACTCCGGAGAGCTCGAGCGGGCTCTGGCAT
TGATCCATGATATAGACCAGGCACTCGCATCAGAAATCTCACAAGAGGAA
CTCCGGCGGGTTGCAGTCTGGGCCACACTCTGTCAGGGACTGCTGACA
back to top