mRNA_M-pyrifera_M_contig91718.21249.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91718.21249.1
Unique NamemRNA_M-pyrifera_M_contig91718.21249.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91718.21249.1 vs. uniprot
Match: F2ARS5_RHOBT (Uncharacterized protein n=1 Tax=Rhodopirellula baltica WH47 TaxID=991778 RepID=F2ARS5_RHOBT)

HSP 1 Score: 46.2 bits (108), Expect = 1.160e-5
Identity = 22/28 (78.57%), Postives = 22/28 (78.57%), Query Frame = -1 
Query:   46 LELPRWGVGKKRNQQRIIRVNTKD*TVQ 129
            LELPRWG GK RNQQRI RVNTK   VQ
Sbjct:    6 LELPRWGEGKNRNQQRIFRVNTKHLAVQ 33
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91718.21249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F2ARS5_RHOBT1.160e-578.57Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91718contigM-pyrifera_M_contig91718:593..721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.311465-CDS-M-pyrifera_M_contig91718:592..7211622816830.311465-CDS-M-pyrifera_M_contig91718:592..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91718 593..721 +
1692278203.6415327-CDS-M-pyrifera_M_contig91718:592..7211692278203.6415327-CDS-M-pyrifera_M_contig91718:592..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91718 593..721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91718.21249.1prot_M-pyrifera_M_contig91718.21249.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91718 593..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91718.21249.1

>prot_M-pyrifera_M_contig91718.21249.1 ID=prot_M-pyrifera_M_contig91718.21249.1|Name=mRNA_M-pyrifera_M_contig91718.21249.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
AETLGLNPVSRLGVRLDCSIFSVDTDDALLVSLLSYAPTGQL*
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mRNA from alignment at M-pyrifera_M_contig91718:593..721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91718.21249.1 ID=mRNA_M-pyrifera_M_contig91718.21249.1|Name=mRNA_M-pyrifera_M_contig91718.21249.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig91718:593..721+ (Macrocystis pyrifera P11B4 male)
GCAGAAACGCTTGGGTTGAATCCCGTGAGCCGTTTGGGCGTTCGCCTGGA
CTGTTCAATCTTTAGTGTTGACACGGATGATGCGCTGTTGGTTTCTCTTC
TTTCCTACGCCCCAACGGGGCAGCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91718:593..721+

>mRNA_M-pyrifera_M_contig91718.21249.1 ID=mRNA_M-pyrifera_M_contig91718.21249.1|Name=mRNA_M-pyrifera_M_contig91718.21249.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig91718:593..721+ (Macrocystis pyrifera P11B4 male)
GCAGAAACGCTTGGGTTGAATCCCGTGAGCCGTTTGGGCGTTCGCCTGGA
CTGTTCAATCTTTAGTGTTGACACGGATGATGCGCTGTTGGTTTCTCTTC
TTTCCTACGCCCCAACGGGGCAGCTCTAAGCAGAAACGCTTGGGTTGAAT
CCCGTGAGCCGTTTGGGCGTTCGCCTGGACTGTTCAATCTTTAGTGTTGA
CACGGATGATGCGCTGTTGGTTTCTCTTCTTTCCTACGCCCCAACGGGGC
AGCTCTAA
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