mRNA_M-pyrifera_M_contig91700.21243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91700.21243.1
Unique NamemRNA_M-pyrifera_M_contig91700.21243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: L8HI25_ACACA (Ras-related protein Rab n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HI25_ACACA)

HSP 1 Score: 96.7 bits (239), Expect = 1.340e-22
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAFAAQKAAKEARARDEAAVSLGGADASAGGCC 327
            WK ++D+KV+LP   PLPV+L+ANKCD+   A++  ++D YC+E+GF  W  TSAKEN  ++ S+  +V  V+K  E  A  K   EA A +EA  S      S+GGCC
Sbjct:  112 WKDDIDNKVRLPNGDPLPVILLANKCDMVKTALNEEVMDQYCKENGFISWFATSAKENTNIDESVACIVNHVIKKDEQGA--KGDAEAFALNEAGPST---RPSSGGCC 215
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: L8HAC7_ACACA (Ras-related protein Rab n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAC7_ACACA)

HSP 1 Score: 92.4 bits (228), Expect = 6.390e-21
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:    1 WKHEVDSKVKLP-GEAPLPVVLVANKCDLADR--AIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAFAAQKAAKEARARDEAAVSLGGAD-----ASAGGCC 327
            WK+++D+KV LP  + P+PVVL+ANKCDLA    A + A +D YC EHGFAGW ETSAKENI ++ ++  LV ++L++           + + +DE  V +G        A AGGCC
Sbjct:  108 WKNDIDNKVTLPPDDRPIPVVLLANKCDLAKEGFARNAAQMDKYCEEHGFAGWEETSAKENINIDKAVKFLVSKILEND-----INRQNQLQKKDENIVKVGAGGPEPKKAGAGGCC 219
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: A0A1V9YVF5_9STRA (Ras-related protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YVF5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.570e-20
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAF 237
            WK E+D+KV+LP + PLPV+L  NKCDLA   ID A LD +C  +GFAGW ETSAKEN  ++ +   LV  +L H + F
Sbjct:  106 WKKEIDTKVELPNKKPLPVILCGNKCDLASD-IDRAFLDGFCETNGFAGWFETSAKENTNIDEANKALVAAILAHRDVF 183
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: A0A8K1C4T0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4T0_PYTOL)

HSP 1 Score: 91.3 bits (225), Expect = 1.710e-20
Identity = 52/114 (45.61%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAFA----AQKAAKEAR-ARDEAAVSLGGADASAGGCC 327
            WK E+DSKV+LP   PLPV+L  NKCDL+   +D A LD +C  +GFAGW ETSAKEN  ++ +   LV  +L+H + F     AQ  A   R + ++AA S     AS+  CC
Sbjct:  107 WKKEIDSKVELPNNKPLPVILCGNKCDLSGD-VDRAFLDAFCETNGFAGWFETSAKENKNIDEAAKALVSSILEHRDIFERKTDAQNRANTIRPSHNDAAAS----SASSSWCC 215
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-20
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAFA 240
            WK E+D+KV LP   PLPVVL+ANKCD+    ID+  LD +C EHGF  W ETSAK + +++A+   L++ +L+H + FA
Sbjct:  102 WKGEIDAKVVLPNHEPLPVVLLANKCDIEGVKIDSDALDKFCEEHGFIAWFETSAKTDHKIDAAARFLLENILEHEDIFA 181
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: F0YEW4_AURAN (Ras-related protein Rab (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW4_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.720e-20
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEAS 192
            WK E+DSKV LP    LPVVL+ANKCDL D AID   LDD+CR HGF GW ETSAK ++ ++ +
Sbjct:  112 WKDEIDSKVHLPNGMALPVVLLANKCDLEDVAIDRQELDDFCRSHGFIGWFETSAKADVNIDTA 175
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: A0A814I8K4_9BILA (Ras-related protein Rab n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814I8K4_9BILA)

HSP 1 Score: 90.9 bits (224), Expect = 3.020e-20
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAI--DTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAFAAQKAAKEARARDEAAVSLGGADASAGGCC 327
            WK+++D KV+LP   P+P VL+ANKCDLA   +  +T  +D++CRE GF  W ETSAKEN+ +EA+   L+ E++KH E    Q   K  R+ D   V       S  GCC
Sbjct:  122 WKNDLDIKVQLPDGNPVPCVLLANKCDLAKEGLVNNTTQMDEFCREKGFCKWFETSAKENVNIEAAANYLLGEIMKHTE----QIQQKPQRSSDAITVDQEPKTNSKKGCC 228
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: UPI001CFC2F3D (ras-related protein Rab-32 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC2F3D)

HSP 1 Score: 90.1 bits (222), Expect = 4.310e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVL 219
            WK+++DSKVKLP  +P+P VL+ANKCD  D   +   +DD+C+E+GFAGW ETSAKEN  +E +   LV+ +L
Sbjct:  109 WKNDLDSKVKLPDGSPVPAVLLANKCDQKDGTKNDVSMDDFCKENGFAGWFETSAKENRNIEEATRFLVENIL 181
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: A0A1V9YUT9_9STRA (Ras-related protein Rab n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUT9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.690e-20
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVLKHPEAF 237
            WK E+D+KV+LP + PLPV+L  NKCDLA   +D A LD++C  +GFAGW +TSAKEN  ++ +   LV  +L H + F
Sbjct:  108 WKKEIDTKVELPNKKPLPVILCGNKCDLAGE-VDRAFLDEFCETNGFAGWFDTSAKENKNIDEANKALVAAILAHRDIF 185
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BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Match: S4R5C5_PETMA (Ras-related protein Rab n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4R5C5_PETMA)

HSP 1 Score: 90.1 bits (222), Expect = 4.780e-20
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 WKHEVDSKVKLPGEAPLPVVLVANKCD-----LADRAIDTAILDDYCREHGFAGWIETSAKENIRVEASITTLVKEVL 219
            WKH++DSKV LP   P+P VL+ANKCD           DTA LD YCR+ GF GW ETSAKENI VEA+   LV+ +L
Sbjct:  107 WKHDLDSKVTLPSGKPIPTVLLANKCDGDGGDARGEWSDTAQLDRYCRDEGFVGWFETSAKENINVEAAAQLLVQRIL 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91700.21243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HI25_ACACA1.340e-2244.95Ras-related protein Rab n=1 Tax=Acanthamoeba caste... [more]
L8HAC7_ACACA6.390e-2144.44Ras-related protein Rab n=1 Tax=Acanthamoeba caste... [more]
A0A1V9YVF5_9STRA1.570e-2053.16Ras-related protein Rab n=3 Tax=Saprolegniaceae Ta... [more]
A0A8K1C4T0_PYTOL1.710e-2045.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2S186_9STRA1.820e-2050.00Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
F0YEW4_AURAN2.720e-2060.94Ras-related protein Rab (Fragment) n=1 Tax=Aureoco... [more]
A0A814I8K4_9BILA3.020e-2044.14Ras-related protein Rab n=1 Tax=Didymodactylos car... [more]
UPI001CFC2F3D4.310e-2053.42ras-related protein Rab-32 n=1 Tax=Protopterus ann... [more]
A0A1V9YUT9_9STRA4.690e-2050.63Ras-related protein Rab n=1 Tax=Thraustotheca clav... [more]
S4R5C5_PETMA4.780e-2056.41Ras-related protein Rab n=2 Tax=Petromyzon marinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91700contigM-pyrifera_M_contig91700:416..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog272952.HpaP801022
Preferred nameRAB32
KEGG koko:K07918,ko:K07923,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
EggNOG free text desc.Dynein light intermediate chain (DLIC)
EggNOG OGs3Q8IA@4776,KOG4423@1,KOG4423@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.101211-CDS-M-pyrifera_M_contig91700:415..7451622816830.101211-CDS-M-pyrifera_M_contig91700:415..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91700 416..745 +
1692278203.5496259-CDS-M-pyrifera_M_contig91700:415..7451692278203.5496259-CDS-M-pyrifera_M_contig91700:415..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91700 416..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91700.21243.1prot_M-pyrifera_M_contig91700.21243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91700 416..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91700.21243.1

>prot_M-pyrifera_M_contig91700.21243.1 ID=prot_M-pyrifera_M_contig91700.21243.1|Name=mRNA_M-pyrifera_M_contig91700.21243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
WKHEVDSKVKLPGEAPLPVVLVANKCDLADRAIDTAILDDYCREHGFAGW
IETSAKENIRVEASITTLVKEVLKHPEAFAAQKAAKEARARDEAAVSLGG
ADASAGGCC*
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mRNA from alignment at M-pyrifera_M_contig91700:416..745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91700.21243.1 ID=mRNA_M-pyrifera_M_contig91700.21243.1|Name=mRNA_M-pyrifera_M_contig91700.21243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig91700:416..745+ (Macrocystis pyrifera P11B4 male)
TGGAAGCACGAGGTGGATTCGAAGGTGAAGCTGCCTGGCGAGGCCCCTCT
CCCGGTGGTGCTGGTGGCGAACAAGTGCGACCTGGCGGATCGGGCGATTG
ACACTGCGATTTTGGATGACTATTGCAGAGAGCACGGTTTCGCGGGGTGG
ATCGAGACTTCGGCGAAAGAGAACATTCGAGTGGAAGCGTCCATCACCAC
CCTCGTCAAGGAGGTGCTCAAGCACCCAGAAGCATTCGCTGCCCAAAAAG
CAGCCAAAGAAGCCAGAGCCAGAGACGAAGCAGCCGTGTCGCTGGGAGGC
GCAGATGCATCCGCCGGGGGGTGCTGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91700:416..745+

>mRNA_M-pyrifera_M_contig91700.21243.1 ID=mRNA_M-pyrifera_M_contig91700.21243.1|Name=mRNA_M-pyrifera_M_contig91700.21243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig91700:416..745+ (Macrocystis pyrifera P11B4 male)
TGGAAGCACGAGGTGGATTCGAAGGTGAAGCTGCCTGGCGAGGCCCCTCT
CCCGGTGGTGCTGGTGGCGAACAAGTGCGACCTGGCGGATCGGGCGATTG
ACACTGCGATTTTGGATGACTATTGCAGAGAGCACGGTTTCGCGGGGTGG
ATCGAGACTTCGGCGAAAGAGAACATTCGAGTGGAAGCGTCCATCACCAC
CCTCGTCAAGGAGGTGCTCAAGCACCCAGAAGCATTCGCTGCCCAAAAAG
CAGCCAAAGAAGCCAGAGCCAGAGACGAAGCAGCCGTGTCGCTGGGAGGC
GCAGATGCATCCGCCGGGGGGTGCTGCTAGTGGAAGCACGAGGTGGATTC
GAAGGTGAAGCTGCCTGGCGAGGCCCCTCTCCCGGTGGTGCTGGTGGCGA
ACAAGTGCGACCTGGCGGATCGGGCGATTGACACTGCGATTTTGGATGAC
TATTGCAGAGAGCACGGTTTCGCGGGGTGGATCGAGACTTCGGCGAAAGA
GAACATTCGAGTGGAAGCGTCCATCACCACCCTCGTCAAGGAGGTGCTCA
AGCACCCAGAAGCATTCGCTGCCCAAAAAGCAGCCAAAGAAGCCAGAGCC
AGAGACGAAGCAGCCGTGTCGCTGGGAGGCGCAGATGCATCCGCCGGGGG
GTGCTGCTAG
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