mRNA_M-pyrifera_M_contig91697.21242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91697.21242.1
Unique NamemRNA_M-pyrifera_M_contig91697.21242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI0019D3B30A (FMN-binding protein n=1 Tax=Bowmanella dokdonensis TaxID=751969 RepID=UPI0019D3B30A)

HSP 1 Score: 119 bits (299), Expect = 3.550e-31
Identity = 65/154 (42.21%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   46 VEYLTVDEALAVHFPQADRFA----------KEVVIPPKGLELRKRKTPTHYFRYEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLAL 477
            V Y +V +A    FP+A +F           K+ +    G+  R+ + P   +R EA  G EL+G+ +VDDV+GK   ITY +A +P  +V+G+EI++YRE+HG EV + ++R QFKG+DV ++ +LG DI NISGAT+SCR++T G+  LL +
Sbjct:   24 VNYFSVTDAQQALFPEAQKFIESPLSLSDEDKDRIKELAGVRQRQDQQPV--WRVEA--GGELIGWFIVDDVVGKHEYITYAVALSPQGKVLGMEIMSYRETHGDEVRQASWRQQFKGKDVQASFKLGDDIANISGATLSCRNLTDGMKRLLVI 173          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI001868B047 (FMN-binding protein n=1 Tax=Microbulbifer hainanensis TaxID=2735675 RepID=UPI001868B047)

HSP 1 Score: 119 bits (297), Expect = 6.730e-31
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   49 EYLTVDEALAVHFPQADRFAKEVV-IPPKGLELRKRKTPTHYFR--YEAWAGDEL---VGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            +YLTV++A    FP A +F    + +     +  K +  T   R     W  ++    +G+  VDDV+GK   ITY LA +P  EV+G+EIL+YRE+HG EV   ++RDQF G+ +D T+RLG D+ NISGAT+SCR++T GV  LL + D
Sbjct:   24 DYLTVEQAQRQFFPNASQFVDSTLDLDDDQRDQIKERAGTRQRRDNQRVWRAEQEGKNLGWMFVDDVIGKHEFITYALAVSPAGEVLGVEILSYRETHGGEVREASWRDQFNGKTLDDTIRLGKDVSNISGATLSCRNVTDGVRRLLNIWD 174          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI001F4C1E1F (FMN-binding protein n=1 Tax=Pelomonas sp. CA6 TaxID=2907999 RepID=UPI001F4C1E1F)

HSP 1 Score: 117 bits (292), Expect = 3.810e-30
Identity = 72/168 (42.86%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   10 PTAVAL-PGAVVGVEYLTVDEALAVHFPQADRF---------AKEVVIPPKGLELRKRKTPTHYFRYEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            P  VAL P   + V+Y++ + A  + F +ADRF         A+   +  +GL+ R            A+ G EL+G  VVDDVLGK   I+Y +    D  V G+EILAYRESHGHEV   A+R QF G+ V + L+LG DI NISGAT+SC  +T GV  ++A++D
Sbjct:    8 PALVALAPAGALAVDYMSAEAAAKLLFAEADRFEARDWRLDAAQAQALAAQGLKPRSGPWRLRL----AYRGSELLGVVVVDDVLGKFELISYAVGVGMDGLVRGVEILAYRESHGHEVRMPAWRKQFVGKTVGAPLKLGEDIANISGATLSCGHVTEGVKRVVAVVD 171          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: A0A2M8DGM3_9BACT (FMN-binding protein n=1 Tax=Nitrospirae bacterium CG_4_9_14_0_8_um_filter_70_14 TaxID=1974059 RepID=A0A2M8DGM3_9BACT)

HSP 1 Score: 118 bits (295), Expect = 4.480e-30
Identity = 66/149 (44.30%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   52 YLTVDEALAVHFPQADRFAKEV--VIPPKGLELRKR--KTPTHYFRY-EAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            YLT ++A+A +FP     A++V  + P +  E+ +R  + P     Y EA    +L+G+  VDDVLG+S PITY++A TP A V G+E+L +RESHG+EV R+ +RDQF+G  +   L LG  I +ISGAT+S R++T GV  +LA  +
Sbjct:   69 YLTPEQAVARYFPPPATTARKVAWLTPAQVAEISRRGGEPPRAVVPYVEARQAGKLLGYCFVDDVLGRSEPITYLVALTPQAAVAGVELLCFRESHGYEVERQGWRDQFRGHRLTPELDLGHAIDSISGATLSARALTRGVRRILATAE 217          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI0009A54A73 (FMN-binding protein n=1 Tax=Zoogloea sp. LCSB751 TaxID=1965277 RepID=UPI0009A54A73)

HSP 1 Score: 116 bits (291), Expect = 6.680e-30
Identity = 65/155 (41.94%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   28 PGAVVGVEYLTVDEALAVHFPQADRFAKEVV-IPPKGLE----LRKRKTPTHYFRYEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLAL 477
            P  V   +Y++V++A    FP+ADRF   V+ + P+ L     +   +      + +AWAG++L+G   VDDVLGK   +TY +A   +  V  +EIL YRE+HG+EV   ++R QF GR +++    G DI+NISGAT+SC  +TAGV  LLAL
Sbjct:   26 PPTVEAAQYMSVEQAEKAAFPEADRFDARVLRLTPEQLRSLDAVASVRQRGEVRQIDAWAGNKLLGTLYVDDVLGKVEWVTYAVAVGAEGAVRSLEILEYRETHGYEVRTPSWRKQFAGRRLETPFHFGEDIKNISGATLSCSHLTAGVQRLLAL 180          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: A0A480BXN9_9GAMM (FMN-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A480BXN9_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 3.120e-29
Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 1
Query:   28 PGAVVGVEYLTVDEALAVHFPQADRFAKE-VVIPPKGLELRKRKTPTHYFR-----YEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLA 474
            P  V   +YL+V++A  V FP ADR+    V +     +  ++ + T  +      ++A  GD ++G   VD V GK   ITY LA T +  V G+EIL YRE+HG++V +  +R QF G+D D  ++LG DI+NISGAT+SCR +T GV  LLA
Sbjct:   17 PIVVHAAQYLSVEQAQRVLFPAADRYEPHSVTLTAAQRKAIEQASDTRVYNSRPKVWQAMQGDTVLGHFFVDQVYGKHEFITYALAITSEGTVAGVEILEYRETHGYQVRQPRWRAQFLGKDADDAVKLGRDIQNISGATLSCRHLTDGVRRLLA 171          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI001CFC9685 (FMN-binding protein n=1 Tax=Microbulbifer variabilis TaxID=266805 RepID=UPI001CFC9685)

HSP 1 Score: 114 bits (285), Expect = 4.300e-29
Identity = 64/151 (42.38%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   49 EYLTVDEALAVHFPQADRFAKEVVIPPKGLELRKRKTPTHYFRYEA---WAGD---ELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            +YL+V +A +  FP A +F    +        + +K      R E    W  +   E +G+  VD+V+GK   ITY LA +P  EV+GIE+L+YRE+HG EV    +R QF+G+ ++ TLRLG D+ NISGAT+SCR+IT GV  LL + D
Sbjct:   24 DYLSVAQAQSQFFPDASQFVDSTLNFDSDQRRQIKKNAGTRQRGETQQVWRAERDGENLGWMFVDNVIGKHEFITYALAVSPSGEVLGIEVLSYRETHGGEVREAGWRSQFEGKSLEDTLRLGKDVTNISGATLSCRNITDGVRRLLTMWD 174          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: A0A848FZP3_9RHOO (FMN-binding protein n=2 Tax=Zoogloea TaxID=349 RepID=A0A848FZP3_9RHOO)

HSP 1 Score: 114 bits (285), Expect = 5.620e-29
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:   28 PGAVVGVEYLTVDEALAVHFPQADRF-AKEVVIPPKGLELRKRKTPTHYFR----YEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLAL 477
            P +V     ++ ++A    FP+ADRF A+ + +  + L       P         +EAWAG  L+G   +DDV+GK   +TY LA   D  V  +EIL YRE+HG EV   ++R QF GR VD+  R G DI+NISGAT+SC  +TAGV  L+AL
Sbjct:   26 PPSVQAAASMSPEQAAHAAFPEADRFDARSLRLSSEQLHGLDAVAPVRQRGEVRLFEAWAGSRLLGTLYIDDVIGKVEWVTYALALGADGSVRSLEILEYRETHGFEVRTPSWRRQFSGRRVDTPFRFGEDIKNISGATLSCAHLTAGVQRLMAL 180          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: UPI00082EDFDD (FMN-binding protein n=1 Tax=Kordiimonas lipolytica TaxID=1662421 RepID=UPI00082EDFDD)

HSP 1 Score: 114 bits (284), Expect = 6.080e-29
Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   49 EYLTVDEALAVHFPQADRFAKEVVIPPKGLELRKRKTPTHYFRYE------AWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            +YL+V +A A  FP AD F    +   K      +K      R++      A AGD+ +G+ +VDDV+GK   ITY  A +PD  V+G+E+++YRE+HG E+    +R    G+ +D   +LG D+ NISGAT+SCR++T GV  LLAL++
Sbjct:   24 DYLSVAQAQAALFPGADSFQASHLSLSKDQRKAIKKLSGVRQRWDEQKVWRAMAGDQTLGWFIVDDVVGKHEFITYAAAISPDGHVLGVEVMSYRETHGDEIMEADWRQNLVGKSLDDRFKLGDDVPNISGATLSCRNVTDGVHRLLALVE 174          
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Match: A0A7V6Z2U0_9BACT (FMN-binding protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7V6Z2U0_9BACT)

HSP 1 Score: 116 bits (291), Expect = 6.410e-29
Identity = 66/150 (44.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   52 YLTVDEALAVHFPQADRFAKEVV-IPPKGLELRKRKTPTHYFRYE-----AWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIEILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSITAGVADLLALLD 483
            YLTV EA  + FP+ADRF +  V    +  +  +++  T           A  G   +G  V+D VLGK   I Y +A  PD +V+ +E+L YRESHGHE+    +R+QFKG+  DS LRL  DI NISGATISCR +T GV  +LA  +
Sbjct:  116 YLTVAEAQRLCFPEADRFEEHTVRFTAEQRKAIEKRIGTRVLNRGNRIVIASKGTSQLGVLVIDHVLGKHEIIDYAVAIAPDGKVLQVEVLEYRESHGHEIRSPRWREQFKGKTADSKLRLNDDISNISGATISCRQVTEGVKRVLATFE 265          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91697.21242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019D3B30A3.550e-3142.21FMN-binding protein n=1 Tax=Bowmanella dokdonensis... [more]
UPI001868B0476.730e-3143.05FMN-binding protein n=1 Tax=Microbulbifer hainanen... [more]
UPI001F4C1E1F3.810e-3042.86FMN-binding protein n=1 Tax=Pelomonas sp. CA6 TaxI... [more]
A0A2M8DGM3_9BACT4.480e-3044.30FMN-binding protein n=1 Tax=Nitrospirae bacterium ... [more]
UPI0009A54A736.680e-3041.94FMN-binding protein n=1 Tax=Zoogloea sp. LCSB751 T... [more]
A0A480BXN9_9GAMM3.120e-2941.94FMN-binding protein n=1 Tax=Gammaproteobacteria ba... [more]
UPI001CFC96854.300e-2942.38FMN-binding protein n=1 Tax=Microbulbifer variabil... [more]
A0A848FZP3_9RHOO5.620e-2942.58FMN-binding protein n=2 Tax=Zoogloea TaxID=349 Rep... [more]
UPI00082EDFDD6.080e-2940.40FMN-binding protein n=1 Tax=Kordiimonas lipolytica... [more]
A0A7V6Z2U0_9BACT6.410e-2944.00FMN-binding protein n=1 Tax=Verrucomicrobia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91697contigM-pyrifera_M_contig91697:293..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.8
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog1538295.JY96_14070
Preferred namernfG
KEGG koko:K03612
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.FMN_bind
EggNOG OGs1KNRW@119065,1RFGW@1224,2VTI7@28216,COG4659@1,COG4659@2
COG Functional cat.C
Best tax levelunclassified Burkholderiales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.0694387-CDS-M-pyrifera_M_contig91697:292..7751622816830.0694387-CDS-M-pyrifera_M_contig91697:292..775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91697 293..775 -
1692278203.5365076-CDS-M-pyrifera_M_contig91697:292..7751692278203.5365076-CDS-M-pyrifera_M_contig91697:292..775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91697 293..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91697.21242.1prot_M-pyrifera_M_contig91697.21242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91697 293..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91697.21242.1

>prot_M-pyrifera_M_contig91697.21242.1 ID=prot_M-pyrifera_M_contig91697.21242.1|Name=mRNA_M-pyrifera_M_contig91697.21242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
LPAPTAVALPGAVVGVEYLTVDEALAVHFPQADRFAKEVVIPPKGLELRK
RKTPTHYFRYEAWAGDELVGFAVVDDVLGKSRPITYMLATTPDAEVVGIE
ILAYRESHGHEVGREAFRDQFKGRDVDSTLRLGGDIRNISGATISCRSIT
AGVADLLALLD
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mRNA from alignment at M-pyrifera_M_contig91697:293..775-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91697.21242.1 ID=mRNA_M-pyrifera_M_contig91697.21242.1|Name=mRNA_M-pyrifera_M_contig91697.21242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig91697:293..775- (Macrocystis pyrifera P11B4 male)
CTCCCCGCCCCGACCGCCGTCGCCCTTCCGGGCGCGGTGGTCGGGGTGGA GTACTTGACCGTCGACGAAGCGCTGGCCGTGCACTTCCCGCAGGCCGACC GCTTCGCCAAGGAGGTCGTGATCCCGCCCAAGGGGCTCGAGCTGCGCAAG CGCAAGACGCCGACGCACTACTTCCGCTACGAGGCGTGGGCCGGCGACGA GCTGGTCGGCTTCGCGGTCGTCGACGACGTGCTGGGCAAGTCGCGGCCGA TCACCTACATGCTGGCGACGACGCCGGACGCCGAGGTCGTCGGCATCGAG ATCCTCGCGTACCGCGAGAGCCACGGCCACGAGGTCGGGCGCGAGGCGTT CCGCGACCAGTTCAAGGGGCGCGACGTCGACAGCACGCTGCGCCTGGGCG GCGACATCCGCAACATCTCCGGCGCGACGATCTCGTGCCGCTCGATCACC GCGGGGGTGGCGGACCTGCTCGCGCTGCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91697:293..775-

>mRNA_M-pyrifera_M_contig91697.21242.1 ID=mRNA_M-pyrifera_M_contig91697.21242.1|Name=mRNA_M-pyrifera_M_contig91697.21242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig91697:293..775- (Macrocystis pyrifera P11B4 male)
CTCCCCGCCCCGACCGCCGTCGCCCTTCCGGGCGCGGTGGTCGGGGTGGA
GTACTTGACCGTCGACGAAGCGCTGGCCGTGCACTTCCCGCAGGCCGACC
GCTTCGCCAAGGAGGTCGTGATCCCGCCCAAGGGGCTCGAGCTGCGCAAG
CGCAAGACGCCGACGCACTACTTCCGCTACGAGGCGTGGGCCGGCGACGA
GCTGGTCGGCTTCGCGGTCGTCGACGACGTGCTGGGCAAGTCGCGGCCGA
TCACCTACATGCTGGCGACGACGCCGGACGCCGAGGTCGTCGGCATCGAG
ATCCTCGCGTACCGCGAGAGCCACGGCCACGAGGTCGGGCGCGAGGCGTT
CCGCGACCAGTTCAAGGGGCGCGACGTCGACAGCACGCTGCGCCTGGGCG
GCGACATCCGCAACATCTCCGGCGCGACGATCTCGTGCCGCTCGATCACC
GCGGGGGTGGCGGACCTGCTCGCGCTGCTCGACCTCCCCGCCCCGACCGC
CGTCGCCCTTCCGGGCGCGGTGGTCGGGGTGGAGTACTTGACCGTCGACG
AAGCGCTGGCCGTGCACTTCCCGCAGGCCGACCGCTTCGCCAAGGAGGTC
GTGATCCCGCCCAAGGGGCTCGAGCTGCGCAAGCGCAAGACGCCGACGCA
CTACTTCCGCTACGAGGCGTGGGCCGGCGACGAGCTGGTCGGCTTCGCGG
TCGTCGACGACGTGCTGGGCAAGTCGCGGCCGATCACCTACATGCTGGCG
ACGACGCCGGACGCCGAGGTCGTCGGCATCGAGATCCTCGCGTACCGCGA
GAGCCACGGCCACGAGGTCGGGCGCGAGGCGTTCCGCGACCAGTTCAAGG
GGCGCGACGTCGACAGCACGCTGCGCCTGGGCGGCGACATCCGCAACATC
TCCGGCGCGACGATCTCGTGCCGCTCGATCACCGCGGGGGTGGCGGACCT
GCTCGCGCTGCTCGAC
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