mRNA_M-pyrifera_M_contig91693.21240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91693.21240.1
Unique NamemRNA_M-pyrifera_M_contig91693.21240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A8J5LRK3_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LRK3_ZINOF)

HSP 1 Score: 84.0 bits (206), Expect = 8.980e-16
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 SLAPQLFSG---DVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVRAKKSKDLGPSQGAAVAFC---FSTNARD-WGQFSVYFLYEDGSVAVLCPVVP 306
            S+A QLF G    + ++  +WHP SS HIG+L+SD++FRLFN++  +E  E    ++     + G  Q AA +FC   FS      W +FSV+F++ DGSV VLCP+VP
Sbjct:  198 SVAAQLFCGLNNGLQILQVSWHPYSSCHIGILSSDSIFRLFNLSCDVEHPEQEYYLQ---PTEPGRCQSAA-SFCPMAFSFGGEHLWDRFSVFFVFSDGSVFVLCPIVP 302          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A4V4H3Z7_MUSBA (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A4V4H3Z7_MUSBA)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-15
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 SLAPQLFSGD---VTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIE--EAEY----TAVVRAKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGLYD 351
            S+A Q+FSG    +  + A+WHP S  H+GVL+SD+VFRLF+++  +E  E EY       VR KK+    P     VAF F      W  FS++ ++ DGSV +LCPVVP   +      + +Y+
Sbjct:  207 SVASQIFSGKNNGLQTLQASWHPYSRSHLGVLSSDSVFRLFDLSSDVERPEQEYYLQPAEPVRCKKAASFCP-----VAFSFG-GQHLWDTFSIFIVFSDGSVYILCPVVPFGSICRRTHIEEIYE 326          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: UPI000D1CE92D (nuclear pore complex protein NUP88-like isoform X1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CE92D)

HSP 1 Score: 82.4 bits (202), Expect = 3.050e-15
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    4 LAPQLFSG-DVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIE--EAEYTAVVRAKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGL-YDLTLAQIDDLTSRREETKQEERSLQQQLLWLQMVCPQVGATNDREDETA 495
            +A  +F+G  + V+ AAWHP S  H+GVL+SD VFRL+N+A  I   E EY   + A+           AV+F F      W +F+V+ L  D S+  LCP+VP         F  L Y  +L  +    S    T +E   L    +WL++V P++G T ++E ET+
Sbjct:  151 IAGDMFNGRSLRVLHAAWHPYSETHLGVLSSDGVFRLYNLAGDITVPEQEYHLQIGARSKPYC-----RAVSFAFG-GEHFWDRFTVFVLLTDASIYALCPIVP---------FGSLHYGSSLKDLAGQVSNNSPTAKESSRLA--AVWLEIVFPELGDT-EKELETS 300          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A833QPL4_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QPL4_9POAL)

HSP 1 Score: 82.0 bits (201), Expect = 4.170e-15
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    4 LAPQLFSGD---VTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVRAKKSKDLGPSQGAAVAFC---FSTNARD-WGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGLYDLTLAQIDDLTSRREETKQEERSLQQQLLWLQMVCPQV 462
            +A Q+ SG    + V+ A+WHP S  HI +LTSD VFRLF+++  +E+ E    ++ + S   G  Q +AV  C   FS  A   W  FS++FL+ DGS+ +LCPVVP   +        +YD       D+ S   E     +  +  L WL+   P++
Sbjct:  184 VATQILSGQDKGIRVLQASWHPFSGAHICLLTSDAVFRLFDLSSDLEKPEQEFYLQLEPS---GRGQ-SAVLLCPVAFSHGAHHLWDTFSIFFLFSDGSIYILCPVVPFGSLYNQKHIKEIYD-------DVKSFELEAANAAKFSRLALSWLEETFPEM 332          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: UPI000C875F11 (nuclear pore complex protein NUP88 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C875F11)

HSP 1 Score: 81.3 bits (199), Expect = 7.710e-15
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   22 SGDVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAE---YTAVVRAKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGLY 348
            +  +  + A+WHP SS H+GVL+SD+VFRLF++  +IE+ E   Y   V   K  ++G      VAF F      W +FSV+ L+ DGS+ VLCPVVP          + +Y
Sbjct:  151 NNGLQTLQASWHPYSSAHLGVLSSDSVFRLFDLLSNIEQPEQEYYLEAVEPGKCHNVGSI--CPVAFSFG-GQHLWERFSVFVLFSDGSIYVLCPVVPFGSFCSLAFLEEIY 259          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A072V9C7_MEDTR (Nuclear pore complex-like protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072V9C7_MEDTR)

HSP 1 Score: 79.7 bits (195), Expect = 2.540e-14
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   16 LFSGDVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVR-AKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVP 306
            L + D+ V+ A+WHP S  H+G+L+SD+VFRLFN+A  + E E    ++ A   +    S    V F F  +   W +FSV+  + DGS+ V+CPVVP
Sbjct:  153 LGNNDIRVLEASWHPYSDTHLGILSSDSVFRLFNLAVDLLEPEQEYYLQPAGPGRSRNASSMCPVGFSFGGDHL-WDRFSVFVAFSDGSIYVICPVVP 249          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A0K9PDB1_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PDB1_ZOSMR)

HSP 1 Score: 79.7 bits (195), Expect = 2.650e-14
Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 SLAPQLFSGD---VTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVRAKKSKDLGP-SQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGLYD 351
            S+  +++ G    + +V  +WHP S  H+G+L+SD VFRL+++   ++  E    ++A +S   G  +   +VAF F      W +F+V+ L+ DGS+ +LCPVVP   +  +   + +Y+
Sbjct:  145 SVGSEMYFGQNDGLRIVQVSWHPYSRTHLGILSSDTVFRLYDLTSDLKRPEQEYYLQAIESGRYGNIASNCSVAFSFG-GEHLWDRFTVFILFSDGSIYILCPVVPFGSIFSSSCLEEIYE 264          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A4P1RMM6_LUPAN (Uncharacterized protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A4P1RMM6_LUPAN)

HSP 1 Score: 79.7 bits (195), Expect = 2.650e-14
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   28 DVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSI---EEAEYTAVVRAKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVP 306
            D+ V+ A WHP S  H+G+L+SD+VFRLFN+A      E+  Y   V + +S++   S    V F F  N   W +FSV+ L+ DG++ VLCPVVP
Sbjct:  159 DIRVLQALWHPSSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQPVESGRSRNA--SSVCPVDFAFGDNHL-WDKFSVFILFSDGAIYVLCPVVP 251          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: G7JB78_MEDTR (Nuclear pore complex-like protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7JB78_MEDTR)

HSP 1 Score: 79.7 bits (195), Expect = 2.650e-14
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   16 LFSGDVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVR-AKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVP 306
            L + D+ V+ A+WHP S  H+G+L+SD+VFRLFN+A  + E E    ++ A   +    S    V F F  +   W +FSV+  + DGS+ V+CPVVP
Sbjct:  153 LGNNDIRVLEASWHPYSDTHLGILSSDSVFRLFNLAVDLLEPEQEYYLQPAGPGRSRNASSMCPVGFSFGGDHL-WDRFSVFVAFSDGSIYVICPVVP 249          
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Match: A0A068V032_COFCA (Uncharacterized protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068V032_COFCA)

HSP 1 Score: 79.3 bits (194), Expect = 3.620e-14
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   31 VTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYTAVVRAKK-SKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPVVPAKCVLPTMLFDGLYDLTLAQIDDLTSRREETKQEERS-LQQQLLWLQMVCPQVG 465
            + ++   WHP S  H+G+L+SD+VFR+FN++ S+++ E    ++  K       S    V F F  N   W +FSV+ L+ DGSV VLCP++P   V    +   +Y      +D  T     T  +  S +   + WL+ + P++ 
Sbjct:  173 IRMLQVYWHPSSDTHLGILSSDSVFRIFNLSMSLQQPEQEYYLQPVKFGSSTRASSICPVDFSFGGNHL-WDRFSVFILFSDGSVYVLCPIIPFGSVYKREVLQEIY------VDAKTVGLNSTNSKAVSNINMAISWLEAIFPELS 312          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91693.21240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5LRK3_ZINOF8.980e-1643.12Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A4V4H3Z7_MUSBA1.220e-1538.89Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
UPI000D1CE92D3.050e-1535.12nuclear pore complex protein NUP88-like isoform X1... [more]
A0A833QPL4_9POAL4.170e-1534.38Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
UPI000C875F117.710e-1539.29nuclear pore complex protein NUP88 n=1 Tax=Dioscor... [more]
A0A072V9C7_MEDTR2.540e-1440.82Nuclear pore complex-like protein n=1 Tax=Medicago... [more]
A0A0K9PDB1_ZOSMR2.650e-1431.40Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]
A0A4P1RMM6_LUPAN2.650e-1443.75Uncharacterized protein n=2 Tax=Lupinus TaxID=3869... [more]
G7JB78_MEDTR2.650e-1440.82Nuclear pore complex-like protein n=1 Tax=Medicago... [more]
A0A068V032_COFCA3.620e-1430.61Uncharacterized protein n=4 Tax=Coffea TaxID=13442... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91693contigM-pyrifera_M_contig91693:282..776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog4641.GSMUA_Achr6P17000_001
KEGG koko:K14318
KEGG TC1.l.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000056,GO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006955,GO:0008104,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009627,GO:0009814,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0017038,GO:0022613,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045087,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0098542
EggNOG free text desc.Nuclear pore component
EggNOG OGs37MVC@33090,3GFG1@35493,3KQD3@4447,KOG4460@1,KOG4460@2759
COG Functional cat.UY
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.985219-CDS-M-pyrifera_M_contig91693:281..7761622816829.985219-CDS-M-pyrifera_M_contig91693:281..776Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91693 282..776 -
1692278203.496915-CDS-M-pyrifera_M_contig91693:281..7761692278203.496915-CDS-M-pyrifera_M_contig91693:281..776Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91693 282..776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91693.21240.1prot_M-pyrifera_M_contig91693.21240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91693 282..776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91693.21240.1

>prot_M-pyrifera_M_contig91693.21240.1 ID=prot_M-pyrifera_M_contig91693.21240.1|Name=mRNA_M-pyrifera_M_contig91693.21240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
SLAPQLFSGDVTVVAAAWHPLSSVHIGVLTSDNVFRLFNVAQSIEEAEYT
AVVRAKKSKDLGPSQGAAVAFCFSTNARDWGQFSVYFLYEDGSVAVLCPV
VPAKCVLPTMLFDGLYDLTLAQIDDLTSRREETKQEERSLQQQLLWLQMV
CPQVGATNDREDETA
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mRNA from alignment at M-pyrifera_M_contig91693:282..776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91693.21240.1 ID=mRNA_M-pyrifera_M_contig91693.21240.1|Name=mRNA_M-pyrifera_M_contig91693.21240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig91693:282..776- (Macrocystis pyrifera P11B4 male)
AGCCTTGCTCCACAGTTGTTCAGTGGTGATGTGACGGTAGTTGCAGCGGC GTGGCATCCACTGAGCTCGGTGCACATTGGAGTTCTCACGTCGGACAATG TCTTCCGCCTCTTCAACGTTGCGCAGAGCATTGAGGAAGCGGAGTACACA GCAGTAGTGAGGGCGAAGAAGAGCAAAGACCTGGGCCCCTCCCAAGGAGC GGCTGTGGCCTTCTGTTTCTCGACCAACGCGCGAGACTGGGGCCAGTTCA GTGTCTACTTCCTCTACGAGGACGGAAGCGTGGCGGTGCTCTGCCCCGTG GTGCCCGCCAAGTGTGTGCTCCCCACGATGCTCTTCGACGGCCTCTACGA CCTGACGTTGGCCCAAATCGACGACCTCACGAGCCGGAGAGAAGAGACAA AGCAAGAGGAGCGCTCGCTACAGCAACAGCTCCTCTGGCTCCAGATGGTC TGCCCCCAGGTGGGCGCCACCAACGACAGAGAGGACGAGACGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91693:282..776-

>mRNA_M-pyrifera_M_contig91693.21240.1 ID=mRNA_M-pyrifera_M_contig91693.21240.1|Name=mRNA_M-pyrifera_M_contig91693.21240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig91693:282..776- (Macrocystis pyrifera P11B4 male)
AGCCTTGCTCCACAGTTGTTCAGTGGTGATGTGACGGTAGTTGCAGCGGC
GTGGCATCCACTGAGCTCGGTGCACATTGGAGTTCTCACGTCGGACAATG
TCTTCCGCCTCTTCAACGTTGCGCAGAGCATTGAGGAAGCGGAGTACACA
GCAGTAGTGAGGGCGAAGAAGAGCAAAGACCTGGGCCCCTCCCAAGGAGC
GGCTGTGGCCTTCTGTTTCTCGACCAACGCGCGAGACTGGGGCCAGTTCA
GTGTCTACTTCCTCTACGAGGACGGAAGCGTGGCGGTGCTCTGCCCCGTG
GTGCCCGCCAAGTGTGTGCTCCCCACGATGCTCTTCGACGGCCTCTACGA
CCTGACGTTGGCCCAAATCGACGACCTCACGAGCCGGAGAGAAGAGACAA
AGCAAGAGGAGCGCTCGCTACAGCAACAGCTCCTCTGGCTCCAGATGGTC
TGCCCCCAGGTGGGCGCCACCAACGACAGAGAGGACGAGACGGCCAGCCT
TGCTCCACAGTTGTTCAGTGGTGATGTGACGGTAGTTGCAGCGGCGTGGC
ATCCACTGAGCTCGGTGCACATTGGAGTTCTCACGTCGGACAATGTCTTC
CGCCTCTTCAACGTTGCGCAGAGCATTGAGGAAGCGGAGTACACAGCAGT
AGTGAGGGCGAAGAAGAGCAAAGACCTGGGCCCCTCCCAAGGAGCGGCTG
TGGCCTTCTGTTTCTCGACCAACGCGCGAGACTGGGGCCAGTTCAGTGTC
TACTTCCTCTACGAGGACGGAAGCGTGGCGGTGCTCTGCCCCGTGGTGCC
CGCCAAGTGTGTGCTCCCCACGATGCTCTTCGACGGCCTCTACGACCTGA
CGTTGGCCCAAATCGACGACCTCACGAGCCGGAGAGAAGAGACAAAGCAA
GAGGAGCGCTCGCTACAGCAACAGCTCCTCTGGCTCCAGATGGTCTGCCC
CCAGGTGGGCGCCACCAACGACAGAGAGGACGAGACGGCC
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