mRNA_M-pyrifera_M_contig9167.21235.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9167.21235.1
Unique NamemRNA_M-pyrifera_M_contig9167.21235.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.430e-26
Identity = 63/100 (63.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 SLFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV 300
            +L SEERAGIL KVAEAL                   ANNIAPAL NRLKLTE KIKVLAEGI+SLA GEEPL+KCNSRLEV EGL+LKQ+    G  L+
Sbjct:  421 ALDSEERAGILRKVAEALLAKSPEITVANERDIKAAKANNIAPALLNRLKLTEDKIKVLAEGITSLADGEEPLSKCNSRLEVQEGLVLKQITSPIGVLLI 520
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: D7G5M6_ECTSI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.410e-25
Identity = 62/100 (62.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 SLFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV 300
            +L SEERAGIL KVAEAL                   ANNIAPAL NRLKLT+ KIKVLAEGI+SLA GEEPL+KCNSRLEV EGL+LKQ+    G  L+
Sbjct:  242 ALDSEERAGILRKVAEALLAKSPEITVANERDIKAAKANNIAPALLNRLKLTKDKIKVLAEGITSLADGEEPLSKCNSRLEVQEGLVLKQITSPIGVLLI 341
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: A0A6G0WZZ7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZZ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.220e-8
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    4 LFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV 300
            L S+ER+ I+ ++A +L                   A ++ P L +RLKLT+AK++ LA+GI+S+A  EEP+ K  S  EV++GL+L+QV    G  LV
Sbjct:  312 LSSKERSAIVQRLARSLVEQSERILAANQLDLEA--AGSLDPQLVSRLKLTQAKLETLAQGIASVANQEEPVGKVVSLTEVSKGLVLEQVTTPIGVILV 408
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: L8HJZ5_ACACA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJZ5_ACACA)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-7
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  115 NNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV 300
            NN+ PAL  RL L + K+  LA G+  +AAGE+P+ K   R E+A+GL+L++V+   G  LV
Sbjct:  363 NNLRPALAARLVLDDKKLHTLASGVRQIAAGEDPIGKVLKRRELADGLVLEEVRVPIGVLLV 424
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: UPI001D6A80D6 (glutamate-5-semialdehyde dehydrogenase n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D6A80D6)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    4 LFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQV 273
            L +E+R   L  VA+AL     XXXXXX        ANNIAPAL+ RLKL E+K++    G+  +A   +P+       E+ EGL+LK+V
Sbjct:   28 LSTEDRNAALLTVAQALLTAKSXXXXXXEADLTAAEANNIAPALYARLKLGESKLEAAIAGVEDVAKLADPIGVAQINRELDEGLVLKRV 117
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: A0A352WLG2_9FIRM (Glutamate-5-semialdehyde dehydrogenase (Fragment) n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A352WLG2_9FIRM)

HSP 1 Score: 50.4 bits (119), Expect = 4.950e-5
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:   31 LTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNG 288
            L KVA+ L                   ANN++PAL +RLKLT+ +I+ +AEG+  +AA  +P+ +  S      GL++ QV+   G
Sbjct:   30 LLKVADYLCDNKSDIIKANKIDLANAEANNMSPALMDRLKLTDERIEAIAEGVRQVAALPDPIGEVLSMKRRPNGLLIGQVRVPIG 115
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: F0WGW4_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Albugo TaxID=65356 RepID=F0WGW4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.400e-5
Identity = 33/99 (33.33%), Postives = 47/99 (47.47%), Query Frame = 1 
Query:    4 LFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV 300
            L S  R+ IL ++A+ L                    N +   +  RL+LTE K+ VLA+GI S+A   EP+     + E+A GLIL+Q     G  LV
Sbjct:  336 LSSTARSKILIRIAQELRQQSEIILRENQKDVYAAEFNKLDEGILARLRLTEEKLFVLADGICSIANAPEPIGSVLKKTEIATGLILQQETAPIGVLLV 434
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BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Match: UPI00034879C7 (glutamate-5-semialdehyde dehydrogenase n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034879C7)

HSP 1 Score: 50.1 bits (118), Expect = 7.010e-5
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    4 LFSEERAGILTKVAEALXXXXXXXXXXXXXXXXXXXANNIAPALFNRLKLTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQV 273
            L +E R   L  +A+AL                   A+NIAPAL+ RLKL E+K++    G+  +A  ++P+       E+ EGLILK+V
Sbjct:   28 LSTEARNNALEAIAKALEASKLEILAANEADLRVAEADNIAPALYARLKLGESKLQAAIAGVRDVAKLDDPVGVNQIHRELDEGLILKRV 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9167.21235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBC7_9PHAE4.430e-2663.00Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
D7G5M6_ECTSI1.410e-2562.00Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A6G0WZZ7_9STRA2.220e-838.38Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=A... [more]
L8HJZ5_ACACA1.970e-745.16Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=A... [more]
UPI001D6A80D62.270e-642.22glutamate-5-semialdehyde dehydrogenase n=1 Tax=Wat... [more]
A0A352WLG2_9FIRM4.950e-533.72Glutamate-5-semialdehyde dehydrogenase (Fragment) ... [more]
F0WGW4_9STRA5.400e-533.33Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=A... [more]
UPI00034879C77.010e-534.44glutamate-5-semialdehyde dehydrogenase n=1 Tax=Ple... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9167contigM-pyrifera_M_contig9167:85..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D7G5M6
Preferred nameALDH18A1
KEGG rclassRC00002,RC00043,RC00684
KEGG koko:K12657
KEGG ReactionR00239,R03313
KEGG Pathwayko00330,ko01100,ko01110,ko01230,map00330,map01100,map01110,map01230
KEGG ModuleM00015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000052,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004349,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006592,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009266,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016772,GO:0016774,GO:0016903,GO:0017084,GO:0018130,GO:0019202,GO:0019240,GO:0019752,GO:0019866,GO:0022414,GO:0022622,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042538,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0048229,GO:0048316,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0055044,GO:0055114,GO:0061458,GO:0071704,GO:0099402,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
EggNOG free text desc.glutamate-5-semialdehyde dehydrogenase activity
EggNOG OGsCOG0014@1,COG0263@1,KOG1154@2759,KOG4165@2759
EC1.2.1.41,2.7.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.7566195-CDS-M-pyrifera_M_contig9167:84..2431622816829.7566195-CDS-M-pyrifera_M_contig9167:84..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9167 85..243 +
1692278203.3603997-CDS-M-pyrifera_M_contig9167:84..2431692278203.3603997-CDS-M-pyrifera_M_contig9167:84..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9167 85..243 +
1622816829.7680857-CDS-M-pyrifera_M_contig9167:1310..14511622816829.7680857-CDS-M-pyrifera_M_contig9167:1310..1451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9167 1311..1451 +
1692278203.3763485-CDS-M-pyrifera_M_contig9167:1310..14511692278203.3763485-CDS-M-pyrifera_M_contig9167:1310..1451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9167 1311..1451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9167.21235.1prot_M-pyrifera_M_contig9167.21235.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9167 85..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9167.21235.1

>prot_M-pyrifera_M_contig9167.21235.1 ID=prot_M-pyrifera_M_contig9167.21235.1|Name=mRNA_M-pyrifera_M_contig9167.21235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
SLFSEERAGILTKVAEALLSKTAEIMKANEKDLMTAKANNIAPALFNRLK
LTEAKIKVLAEGISSLAAGEEPLAKCNSRLEVAEGLILKQVKYSNGPSLV
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mRNA from alignment at M-pyrifera_M_contig9167:85..1451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9167.21235.1 ID=mRNA_M-pyrifera_M_contig9167.21235.1|Name=mRNA_M-pyrifera_M_contig9167.21235.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1367bp|location=Sequence derived from alignment at M-pyrifera_M_contig9167:85..1451+ (Macrocystis pyrifera P11B4 male)
TCGCTCTTTAGCGAGGAGCGAGCGGGCATCCTTACCAAGGTGGCGGAAGC
GCTTCTGTCCAAGACGGCGGAGATCATGAAGGCGAACGAGAAAGACCTCA
TGACGGCAAAGGCCAACAACATCGCCCCCGCCCTGTTCAACCGCCTCAAG
CTCACCGAGGTGCGGGCGTTTGTACAAACTTGTGCAGGTCCTCCTCAAAC
TGGCCGTAGAGAACGCGGCGCAGCAAGTGGGAGTGGTTTGACCCTTTCGC
TGGTGCAAACATTTGCGCACTTGGCACAGATCATCTGCAATCATGGATTC
CCAATTTCGTGATGTAGATATCTCAGGGCAGATAGGTCTTGATCTGTGTG
ATCTGTATGATCTGTATGATCTGTATGATCTGTATGATCTGTATGATCTG
TATGATCTGTGTGATCTACCTCACCCTTGCCCTGGTGGGAGCCGTAGAAT
CTGCATGATCTGTAGGCCGTGGTTTCTCGGTTGGAGTACGTTCTAATGTG
TGGATCCAACAAGAGGACGGGCGAAGGAGCGGGCCGATCGGGCTAAGGCG
ATTAGGCGGCAGCGTCTCATAGCGGCAGCTTAGGACCTGGGTGATCTACA
GTCCGTCGTGGTCTACATCGTTATCTGTCCCACGTGTAATGTTTTCGTCC
TACATTAATTGCGAGTTGTTTTTTTCCCCGCAGGAGTGGGTGTGGTTAGA
AGCGTGTGGAAGGTAGAGGGAGGTTAAAGGTGATCAGTAGAGCGTACTCC
TTGTTATTCTTTACGAATATTCATCTATTTGCTCCGAAGTAATTTATTTA
TTTGCTCGTTTCTTTCTTGATTTCTTGGTTTCTTGATTTCGTTTCTCCTT
TTTTTCCTATTTAATTCTTTTTTTCGTTTTTTTCTTCCTTCTTCCTTCTT
GTTGCTGCTCTTGTTGCATTTTTTACTCAAGTCGTGTATGTTATCATTAC
AGCCATGCGGGTCTCAGCCGGCTATCTATTTACACGCTTGAAACCCCAAC
CGTGATTCTTCGTTTTATCATAACGTTCGTGTCAGGCCGGGCTAAGCTTC
GAGCCCCGAACCGCACCAACCGCACCACGTACTGCATGTTTTACCCTCTT
TTGGTATTCCGGGTGGGCATTTGTAGTAACATTTAGAACCCACGATGGGC
CCGAAAACCAAGTATCCCCTCATGTTCACAACACCACATTTAGTTCTGAT
TGCTGCAGTATGCCCCTCCTGAATAGGCGAAGATCAAGGTGCTGGCCGAG
GGCATCTCGTCCTTGGCCGCAGGAGAGGAGCCCTTGGCTAAATGCAACAG
CCGTCTAGAGGTGGCGGAAGGCCTCATCCTCAAGCAGGTAAAGTACAGCA
ATGGGCCCTCTTTAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9167:85..1451+

>mRNA_M-pyrifera_M_contig9167.21235.1 ID=mRNA_M-pyrifera_M_contig9167.21235.1|Name=mRNA_M-pyrifera_M_contig9167.21235.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig9167:85..1451+ (Macrocystis pyrifera P11B4 male)
TCGCTCTTTAGCGAGGAGCGAGCGGGCATCCTTACCAAGGTGGCGGAAGC
GCTTCTGTCCAAGACGGCGGAGATCATGAAGGCGAACGAGAAAGACCTCA
TGACGGCAAAGGCCAACAACATCGCCCCCGCCCTGTTCAACCGCCTCAAG
CTCACCGAGTCGCTCTTTAGCGAGGAGCGAGCGGGCATCCTTACCAAGGT
GGCGGAAGCGCTTCTGTCCAAGACGGCGGAGATCATGAAGGCGAACGAGA
AAGACCTCATGACGGCAAAGGCCAACAACATCGCCCCCGCCCTGTTCAAC
CGCCTCAAGCTCACCGAGGCGAAGATCAAGGTGCTGGCCGAGGGCATCTC
GTCCTTGGCCGCAGGAGAGGAGCCCTTGGCTAAATGCAACAGCCGTCTAG
AGGTGGCGGAAGGCCTCATCCTCAAGCAGGTAAAGTACAGCAATGGGCCC
TCTTTAGTAGCGAAGATCAAGGTGCTGGCCGAGGGCATCTCGTCCTTGGC
CGCAGGAGAGGAGCCCTTGGCTAAATGCAACAGCCGTCTAGAGGTGGCGG
AAGGCCTCATCCTCAAGCAGGTAAAGTACAGCAATGGGCCCTCTTTAGTA
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