mRNA_M-pyrifera_M_contig91642.21233.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91642.21233.1
Unique NamemRNA_M-pyrifera_M_contig91642.21233.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91642.21233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91642contigM-pyrifera_M_contig91642:1..777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score140.6
Seed ortholog evalue1e-30
Seed eggNOG ortholog742766.HMPREF9455_01828
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM YD repeat
EggNOG OGs2FRH6@200643,4NHYT@976,COG3209@1,COG3209@2
COG Functional cat.M
Best tax levelBacteroidia
Best eggNOG OGNA|NA|NA
Exons1
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.5671685-CDS-M-pyrifera_M_contig91642:0..7771622816829.5671685-CDS-M-pyrifera_M_contig91642:0..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91642 1..777 +
1692278203.2706053-CDS-M-pyrifera_M_contig91642:0..7771692278203.2706053-CDS-M-pyrifera_M_contig91642:0..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91642 1..777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91642.21233.1prot_M-pyrifera_M_contig91642.21233.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91642 1..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91642.21233.1

>prot_M-pyrifera_M_contig91642.21233.1 ID=prot_M-pyrifera_M_contig91642.21233.1|Name=mRNA_M-pyrifera_M_contig91642.21233.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp
NYVDQYVEVSYYMSYEAGSNGEIEESHKKYDRGYVKLTDITAGGIGLIDY
DDRSQQQQSSTVYLKKNHEYRMAIMASCYYLDGYIGLTYNSYDAESDRYK
YPTGGLRVASITNRDLDNSFAGKKVFEYQKPGTSHSSGTLLNEERLEYIK
TSTSLKAVIPTSTDPDHTGGGAECTYSHTETTSVFSNPTVGKYSANVMYQ
YVKAYDVDQNNQPEGRTEHEFLLNLDSSPANDILISNAWKRGKEIANTVY
DQSDSKLTE
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mRNA from alignment at M-pyrifera_M_contig91642:1..777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91642.21233.1 ID=mRNA_M-pyrifera_M_contig91642.21233.1|Name=mRNA_M-pyrifera_M_contig91642.21233.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig91642:1..777+ (Macrocystis pyrifera P11B4 male)
AATTATGTAGATCAATATGTAGAAGTAAGCTATTACATGAGCTATGAGGC
AGGCTCTAATGGAGAAATCGAAGAATCGCATAAAAAATACGACCGCGGTT
ATGTGAAACTCACTGATATCACCGCAGGCGGTATAGGTCTGATAGATTAT
GACGACAGGTCTCAACAGCAACAATCGTCCACGGTCTATTTGAAAAAGAA
TCATGAATATCGAATGGCTATTATGGCCAGTTGCTATTATTTGGATGGTT
ACATAGGCCTTACATACAACAGCTATGATGCCGAGTCCGATAGATATAAG
TACCCTACTGGCGGACTTAGAGTTGCATCGATCACCAATAGGGATTTAGA
CAATTCCTTTGCAGGAAAAAAAGTCTTTGAATACCAAAAACCAGGCACCT
CTCATTCCAGCGGAACCTTGCTAAATGAGGAAAGATTAGAGTACATCAAA
ACCTCAACATCCTTAAAAGCAGTGATCCCGACTTCTACGGACCCTGACCA
TACAGGAGGAGGAGCGGAATGTACATACAGTCATACCGAAACCACGAGTG
TATTTTCTAACCCTACCGTTGGAAAATACAGTGCTAATGTGATGTATCAA
TATGTGAAGGCTTATGATGTAGATCAGAATAATCAGCCTGAGGGAAGAAC
CGAACATGAATTTTTGCTAAACCTGGATTCGTCCCCGGCCAACGATATTC
TCATCTCTAATGCTTGGAAAAGGGGAAAAGAAATAGCGAATACGGTTTAT
GACCAGTCCGACTCAAAACTGACGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91642:1..777+

>mRNA_M-pyrifera_M_contig91642.21233.1 ID=mRNA_M-pyrifera_M_contig91642.21233.1|Name=mRNA_M-pyrifera_M_contig91642.21233.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig91642:1..777+ (Macrocystis pyrifera P11B4 male)
AATTATGTAGATCAATATGTAGAAGTAAGCTATTACATGAGCTATGAGGC
AGGCTCTAATGGAGAAATCGAAGAATCGCATAAAAAATACGACCGCGGTT
ATGTGAAACTCACTGATATCACCGCAGGCGGTATAGGTCTGATAGATTAT
GACGACAGGTCTCAACAGCAACAATCGTCCACGGTCTATTTGAAAAAGAA
TCATGAATATCGAATGGCTATTATGGCCAGTTGCTATTATTTGGATGGTT
ACATAGGCCTTACATACAACAGCTATGATGCCGAGTCCGATAGATATAAG
TACCCTACTGGCGGACTTAGAGTTGCATCGATCACCAATAGGGATTTAGA
CAATTCCTTTGCAGGAAAAAAAGTCTTTGAATACCAAAAACCAGGCACCT
CTCATTCCAGCGGAACCTTGCTAAATGAGGAAAGATTAGAGTACATCAAA
ACCTCAACATCCTTAAAAGCAGTGATCCCGACTTCTACGGACCCTGACCA
TACAGGAGGAGGAGCGGAATGTACATACAGTCATACCGAAACCACGAGTG
TATTTTCTAACCCTACCGTTGGAAAATACAGTGCTAATGTGATGTATCAA
TATGTGAAGGCTTATGATGTAGATCAGAATAATCAGCCTGAGGGAAGAAC
CGAACATGAATTTTTGCTAAACCTGGATTCGTCCCCGGCCAACGATATTC
TCATCTCTAATGCTTGGAAAAGGGGAAAAGAAATAGCGAATACGGTTTAT
GACCAGTCCGACTCAAAACTGACGGAGAATTATGTAGATCAATATGTAGA
AGTAAGCTATTACATGAGCTATGAGGCAGGCTCTAATGGAGAAATCGAAG
AATCGCATAAAAAATACGACCGCGGTTATGTGAAACTCACTGATATCACC
GCAGGCGGTATAGGTCTGATAGATTATGACGACAGGTCTCAACAGCAACA
ATCGTCCACGGTCTATTTGAAAAAGAATCATGAATATCGAATGGCTATTA
TGGCCAGTTGCTATTATTTGGATGGTTACATAGGCCTTACATACAACAGC
TATGATGCCGAGTCCGATAGATATAAGTACCCTACTGGCGGACTTAGAGT
TGCATCGATCACCAATAGGGATTTAGACAATTCCTTTGCAGGAAAAAAAG
TCTTTGAATACCAAAAACCAGGCACCTCTCATTCCAGCGGAACCTTGCTA
AATGAGGAAAGATTAGAGTACATCAAAACCTCAACATCCTTAAAAGCAGT
GATCCCGACTTCTACGGACCCTGACCATACAGGAGGAGGAGCGGAATGTA
CATACAGTCATACCGAAACCACGAGTGTATTTTCTAACCCTACCGTTGGA
AAATACAGTGCTAATGTGATGTATCAATATGTGAAGGCTTATGATGTAGA
TCAGAATAATCAGCCTGAGGGAAGAACCGAACATGAATTTTTGCTAAACC
TGGATTCGTCCCCGGCCAACGATATTCTCATCTCTAATGCTTGGAAAAGG
GGAAAAGAAATAGCGAATACGGTTTATGACCAGTCCGACTCAAAACTGAC
GGAG
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