mRNA_M-pyrifera_M_contig91626.21230.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91626.21230.1
Unique NamemRNA_M-pyrifera_M_contig91626.21230.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: G4YYC6_PHYSP (FeS_assembly_P domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=G4YYC6_PHYSP)

HSP 1 Score: 137 bits (345), Expect = 1.130e-39
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            SR+++ FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTHASEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   77 SRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHASEAAVNKQLNDKERVAAALENAHLLTVVNKCIANTD 160
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BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A662WW54_9STRA (FeS_assembly_P domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW54_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.310e-39
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            S V++ FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTH+SEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   75 SHVKIYFTPTIPHCSMATLIGLCLRVKLLRSLPARFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIANTD 158
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BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A0P1A7T1_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7T1_PLAHL)

HSP 1 Score: 135 bits (341), Expect = 4.580e-39
Identity = 63/84 (75.00%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            SR+++ FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPG+H+SEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   77 SRIKVYFTPTIPHCSMATLIGLCLRVKLLRSLPSRFKVDILITPGSHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIANTD 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A5D6YBX4_9STRA (FeS_assembly_P domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.180e-39
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            SRV + FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTH+SEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   73 SRVTVFFTPTIPHCSMATLIGLCLRVKLLRSLPARFKVDILITPGTHSSEAAVNKQLNDKERVAAALENAHLLLVVNKCIANTD 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A8J5J4P6_9STRA (FeS_assembly_P domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J4P6_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.160e-38
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            SRV++ FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTH+SEAA+NKQL DKERVAAA+EN HLL VVN+C+  TD
Sbjct:   77 SRVKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDIFITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A067D6V7_SAPPC (FeS_assembly_P domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D6V7_SAPPC)

HSP 1 Score: 134 bits (338), Expect = 1.160e-38
Identity = 63/84 (75.00%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            SRV++ FTPTIPHCSMATLIGLC++VKL+RSLP+RFKV + ITPGTH +E AINKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   73 SRVKVQFTPTIPHCSMATLIGLCIRVKLLRSLPKRFKVDIRITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKCIANTD 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: K3WKJ9_GLOUD (FeS_assembly_P domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKJ9_GLOUD)

HSP 1 Score: 134 bits (338), Expect = 1.350e-38
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    7 VRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            V++ FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTH+SEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   80 VKVFFTPTIPHCSMATLIGLCLRVKLLRSLPSRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLHVVNKCIANTD 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A418B6Y3_9STRA (FeS_assembly_P domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6Y3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.510e-38
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            S+V++ FTPTIPHCSMATLIGLC++VKL+RSLP+RFKV + ITPGTH +E AINKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   35 SQVKVQFTPTIPHCSMATLIGLCIRVKLLRSLPKRFKVDIRITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKCIANTD 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A5A8CFG1_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFG1_CAFRO)

HSP 1 Score: 134 bits (337), Expect = 2.790e-38
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    7 VRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            VR+ FTPTIPHCSMATLIGLC+KVKL RSLPRR++  VSITPG+HASEAAINKQLADKERVAAA+EN HLL+VV+RC+   D
Sbjct:   76 VRVQFTPTIPHCSMATLIGLCIKVKLARSLPRRYRTSVSITPGSHASEAAINKQLADKERVAAAMENAHLLDVVDRCLDGAD 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Match: A0A8K1CGU1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU1_PYTOL)

HSP 1 Score: 133 bits (335), Expect = 3.730e-38
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    1 SRVRMTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAINKQLADKERVAAAIENDHLLEVVNRCVKDTD 252
            S V + FTPTIPHCSMATLIGLCL+VKL+RSLP RFKV + ITPGTH+SEAA+NKQL DKERVAAA+EN HLL VVN+C+ +TD
Sbjct:   77 SYVCVYFTPTIPHCSMATLIGLCLRVKLLRSLPSRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLHVVNKCIANTD 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91626.21230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4YYC6_PHYSP1.130e-3977.38FeS_assembly_P domain-containing protein n=17 Tax=... [more]
A0A662WW54_9STRA4.310e-3976.19FeS_assembly_P domain-containing protein (Fragment... [more]
A0A0P1A7T1_PLAHL4.580e-3975.00Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A5D6YBX4_9STRA8.180e-3977.38FeS_assembly_P domain-containing protein (Fragment... [more]
A0A8J5J4P6_9STRA1.160e-3877.38FeS_assembly_P domain-containing protein n=1 Tax=P... [more]
A0A067D6V7_SAPPC1.160e-3875.00FeS_assembly_P domain-containing protein n=3 Tax=S... [more]
K3WKJ9_GLOUD1.350e-3876.83FeS_assembly_P domain-containing protein n=1 Tax=G... [more]
A0A418B6Y3_9STRA1.510e-3873.81FeS_assembly_P domain-containing protein n=1 Tax=A... [more]
A0A5A8CFG1_CAFRO2.790e-3879.27Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A8K1CGU1_PYTOL3.730e-3876.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91626contigM-pyrifera_M_contig91626:2..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.1e-29
Seed eggNOG ortholog42099.EPrPV00000019201
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0051186,GO:0051604,GO:0071704,GO:0071840,GO:0097428,GO:0106035,GO:1901564
EggNOG free text desc.Source PGD
EggNOG OGs1MEK5@121069,COG5133@1,KOG3381@2759
COG Functional cat.B
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size240
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.418733-UTR-M-pyrifera_M_contig91626:1..131622816829.418733-UTR-M-pyrifera_M_contig91626:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91626 2..13 +
1692278203.1706731-UTR-M-pyrifera_M_contig91626:1..131692278203.1706731-UTR-M-pyrifera_M_contig91626:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91626 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.4304721-CDS-M-pyrifera_M_contig91626:13..2531622816829.4304721-CDS-M-pyrifera_M_contig91626:13..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91626 14..253 +
1692278203.1866162-CDS-M-pyrifera_M_contig91626:13..2531692278203.1866162-CDS-M-pyrifera_M_contig91626:13..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91626 14..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91626.21230.1prot_M-pyrifera_M_contig91626.21230.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91626 14..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91626.21230.1

>prot_M-pyrifera_M_contig91626.21230.1 ID=prot_M-pyrifera_M_contig91626.21230.1|Name=mRNA_M-pyrifera_M_contig91626.21230.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MTFTPTIPHCSMATLIGLCLKVKLMRSLPRRFKVHVSITPGTHASEAAIN
KQLADKERVAAAIENDHLLEVVNRCVKDTD
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mRNA from alignment at M-pyrifera_M_contig91626:2..253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91626.21230.1 ID=mRNA_M-pyrifera_M_contig91626.21230.1|Name=mRNA_M-pyrifera_M_contig91626.21230.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig91626:2..253+ (Macrocystis pyrifera P11B4 male)
AGTCGCGTTCGGATGACGTTCACTCCGACGATTCCACACTGCTCGATGGC
GACTCTGATTGGGCTGTGCCTCAAGGTGAAGCTGATGCGGTCGCTGCCGC
GGCGGTTCAAGGTGCACGTGTCCATCACGCCCGGGACGCACGCCTCAGAG
GCTGCCATCAACAAGCAGCTGGCGGACAAGGAGAGAGTGGCTGCTGCCAT
CGAAAACGACCACCTCCTCGAAGTCGTAAACAGGTGCGTCAAAGACACAG
AC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91626:2..253+

>mRNA_M-pyrifera_M_contig91626.21230.1 ID=mRNA_M-pyrifera_M_contig91626.21230.1|Name=mRNA_M-pyrifera_M_contig91626.21230.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig91626:2..253+ (Macrocystis pyrifera P11B4 male)
ATGACGTTCACTCCGACGATTCCACACTGCTCGATGGCGACTCTGATTGG
GCTGTGCCTCAAGGTGAAGCTGATGCGGTCGCTGCCGCGGCGGTTCAAGG
TGCACGTGTCCATCACGCCCGGGACGCACGCCTCAGAGGCTGCCATCAAC
AAGCAGCTGGCGGACAAGGAGAGAGTGGCTGCTGCCATCGAAAACGACCA
CCTCCTCGAAGTCGTAAACAGGTGCGTCAAAGACACAGACATGACGTTCA
CTCCGACGATTCCACACTGCTCGATGGCGACTCTGATTGGGCTGTGCCTC
AAGGTGAAGCTGATGCGGTCGCTGCCGCGGCGGTTCAAGGTGCACGTGTC
CATCACGCCCGGGACGCACGCCTCAGAGGCTGCCATCAACAAGCAGCTGG
CGGACAAGGAGAGAGTGGCTGCTGCCATCGAAAACGACCACCTCCTCGAA
GTCGTAAACAGGTGCGTCAAAGACACAGAC
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