mRNA_M-pyrifera_M_contig91612.21226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91612.21226.1
Unique NamemRNA_M-pyrifera_M_contig91612.21226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91612.21226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91612contigM-pyrifera_M_contig91612:58..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.2
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog5334.XP_003036594.1
Preferred nameCSN12
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000749,GO:0000754,GO:0000956,GO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010646,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016973,GO:0018130,GO:0019222,GO:0019236,GO:0019438,GO:0019439,GO:0023051,GO:0023058,GO:0031136,GO:0031137,GO:0031139,GO:0031503,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070390,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071033,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071444,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:2000241,GO:2000243
EggNOG free text desc.Cop9 signalosome complex subunit 12
EggNOG OGs226NX@155619,38I46@33154,3NY0K@4751,3UZH4@5204,3W2Z7@5338,COG5600@1,KOG2688@2759
COG Functional cat.D
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons1
Model size651
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.2799888-CDS-M-pyrifera_M_contig91612:57..7081622816829.2799888-CDS-M-pyrifera_M_contig91612:57..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91612 58..708 +
1692278203.08739-CDS-M-pyrifera_M_contig91612:57..7081692278203.08739-CDS-M-pyrifera_M_contig91612:57..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91612 58..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91612.21226.1prot_M-pyrifera_M_contig91612.21226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91612 58..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91612.21226.1

>prot_M-pyrifera_M_contig91612.21226.1 ID=prot_M-pyrifera_M_contig91612.21226.1|Name=mRNA_M-pyrifera_M_contig91612.21226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
TLEDLSRVLHEAARSVLTAREPPDVDLRRSKRSTVIPILSLLIRAAFQGN
NLVLLAPLLSMRTHLPPLSKCHKADAVTFQYMYARFLIAKGHYADALGEL
KHALASLPPQEFRMACKGAPTAHFARRRAIYLLLVPLRMLWMRIPSETLL
RRYRLEHLYLPLVQALKNGKPGEYAAALDDRRRVLVQSGVYLLCESALRV
VHVRLLRRVAVAAQKEA
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mRNA from alignment at M-pyrifera_M_contig91612:58..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91612.21226.1 ID=mRNA_M-pyrifera_M_contig91612.21226.1|Name=mRNA_M-pyrifera_M_contig91612.21226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig91612:58..708+ (Macrocystis pyrifera P11B4 male)
ACACTAGAGGATCTTTCCCGTGTGCTCCATGAGGCTGCACGGAGTGTGTT
GACTGCGAGAGAACCTCCTGACGTGGATTTGCGGAGATCCAAGCGATCGA
CTGTCATTCCCATCTTGTCACTGCTGATTCGCGCCGCGTTTCAAGGCAAC
AACCTCGTGCTTCTCGCCCCGCTCCTCTCCATGCGAACGCACCTCCCTCC
GCTCTCCAAGTGCCACAAGGCCGACGCTGTCACCTTCCAGTACATGTACG
CCCGTTTCCTCATCGCAAAGGGGCATTATGCCGATGCTCTCGGGGAGCTC
AAGCACGCGCTCGCCTCCCTCCCGCCCCAGGAGTTCCGCATGGCCTGCAA
AGGCGCTCCAACGGCTCATTTCGCGCGCCGAAGGGCAATCTACCTCCTCC
TCGTGCCCCTGCGGATGCTCTGGATGCGCATCCCGTCCGAAACGCTGCTG
CGGCGCTATCGGCTCGAGCACCTGTACTTGCCGCTGGTCCAGGCCCTGAA
AAACGGCAAGCCGGGAGAATACGCGGCGGCCTTGGACGACAGACGGCGCG
TTCTGGTCCAGTCCGGCGTGTATTTGCTGTGCGAGTCTGCGCTGCGCGTG
GTGCATGTGCGTCTGCTGCGCAGAGTGGCGGTGGCGGCGCAAAAAGAGGC
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91612:58..708+

>mRNA_M-pyrifera_M_contig91612.21226.1 ID=mRNA_M-pyrifera_M_contig91612.21226.1|Name=mRNA_M-pyrifera_M_contig91612.21226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig91612:58..708+ (Macrocystis pyrifera P11B4 male)
ACACTAGAGGATCTTTCCCGTGTGCTCCATGAGGCTGCACGGAGTGTGTT
GACTGCGAGAGAACCTCCTGACGTGGATTTGCGGAGATCCAAGCGATCGA
CTGTCATTCCCATCTTGTCACTGCTGATTCGCGCCGCGTTTCAAGGCAAC
AACCTCGTGCTTCTCGCCCCGCTCCTCTCCATGCGAACGCACCTCCCTCC
GCTCTCCAAGTGCCACAAGGCCGACGCTGTCACCTTCCAGTACATGTACG
CCCGTTTCCTCATCGCAAAGGGGCATTATGCCGATGCTCTCGGGGAGCTC
AAGCACGCGCTCGCCTCCCTCCCGCCCCAGGAGTTCCGCATGGCCTGCAA
AGGCGCTCCAACGGCTCATTTCGCGCGCCGAAGGGCAATCTACCTCCTCC
TCGTGCCCCTGCGGATGCTCTGGATGCGCATCCCGTCCGAAACGCTGCTG
CGGCGCTATCGGCTCGAGCACCTGTACTTGCCGCTGGTCCAGGCCCTGAA
AAACGGCAAGCCGGGAGAATACGCGGCGGCCTTGGACGACAGACGGCGCG
TTCTGGTCCAGTCCGGCGTGTATTTGCTGTGCGAGTCTGCGCTGCGCGTG
GTGCATGTGCGTCTGCTGCGCAGAGTGGCGGTGGCGGCGCAAAAAGAGGC
CACACTAGAGGATCTTTCCCGTGTGCTCCATGAGGCTGCACGGAGTGTGT
TGACTGCGAGAGAACCTCCTGACGTGGATTTGCGGAGATCCAAGCGATCG
ACTGTCATTCCCATCTTGTCACTGCTGATTCGCGCCGCGTTTCAAGGCAA
CAACCTCGTGCTTCTCGCCCCGCTCCTCTCCATGCGAACGCACCTCCCTC
CGCTCTCCAAGTGCCACAAGGCCGACGCTGTCACCTTCCAGTACATGTAC
GCCCGTTTCCTCATCGCAAAGGGGCATTATGCCGATGCTCTCGGGGAGCT
CAAGCACGCGCTCGCCTCCCTCCCGCCCCAGGAGTTCCGCATGGCCTGCA
AAGGCGCTCCAACGGCTCATTTCGCGCGCCGAAGGGCAATCTACCTCCTC
CTCGTGCCCCTGCGGATGCTCTGGATGCGCATCCCGTCCGAAACGCTGCT
GCGGCGCTATCGGCTCGAGCACCTGTACTTGCCGCTGGTCCAGGCCCTGA
AAAACGGCAAGCCGGGAGAATACGCGGCGGCCTTGGACGACAGACGGCGC
GTTCTGGTCCAGTCCGGCGTGTATTTGCTGTGCGAGTCTGCGCTGCGCGT
GGTGCATGTGCGTCTGCTGCGCAGAGTGGCGGTGGCGGCGCAAAAAGAGG
CC
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