mRNA_M-pyrifera_M_contig9161.21225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9161.21225.1
Unique NamemRNA_M-pyrifera_M_contig9161.21225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Match: A0A6H5L384_9PHAE (Cytochrome b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L384_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 9.710e-62
Identity = 92/128 (71.88%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:    1 QLHSALSNLALLSMLGGLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVANVALAGGNTADLGKKRLVFLWQSRKHRWLGAAAYTATLGTVSSGFHSGWGLRSLGGERGAWAMTAGVALMFLGVASQG 384
            QLHSALSNLAL SMLGGLYAIY+NK+ MGK+HWTSWH+W G+ ALALWV N A+AG NTADL K+RLVFLW+SR HRW G AA+ A LG V  G HSGWGLRSLGGERGAW +TAGV  +F+G+ + G
Sbjct:   67 QLHSALSNLALASMLGGLYAIYTNKEKMGKNHWTSWHSWAGVLALALWVGNFAVAGANTADLEKRRLVFLWKSRNHRWAGKAAFCAGLGAVVLGLHSGWGLRSLGGERGAWTLTAGVLGVFVGIVASG 194
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BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Match: A0A812RVE1_9DINO (Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RVE1_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 3.730e-17
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:   19 SNLALLSMLG-GLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVANVALAGGNTADLGKKRLVFLWQSRKHRWLGAAAYTATLGTVSSGFHSGWGLRSLGGERGAWAMTAGVALM 360
            +N+AL+++   G +AI+ NK+L GK H+TSWH+W GL  LALW+ N+AL       LG     + W+   HR +G  A T +LG V +G  S WG  +LG     W +TA + L+
Sbjct:   80 TNIALVAVSAVGFWAIFQNKNLHGKAHFTSWHSWAGLATLALWLMNLALGLQRLVALGS----WQWRHVLHRLVGTLAGTISLGAVVTGIWSQWGQAALGAHL-QWILTALIGLV 189
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BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Match: A0A7S1VDZ5_9EUKA (Hypothetical protein n=2 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VDZ5_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 4.360e-6
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    7 HSALSNLALLSMLGGLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVANVALAGGNTADLGKKRLVFLWQSRKHRWLGAAAYTATLGTVSSGFH 288
            H+ ++ +A+L+   G Y IYSNK+L GK H TSWHA  G+ AL L    V +A    +     R    W+   H  LG   + A   T  +GF+
Sbjct:   67 HAVVNGIAVLAAGFGYYVIYSNKELAGKAHVTSWHAVLGIVALILLGIQVGIAITKVSPFDTPRDRRPWKDM-HLKLGLLVWLAGCTTAFTGFY 159
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BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Match: A0A7S2F9S8_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F9S8_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 4.670e-6
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    7 HSALSNLALLSMLGGLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVANVALAGGNTADLGKKRLVFLWQSRKHRW 234
            H++L +L +L  + G YAIY+NK + GK H+TS+H++ GL A  L  A VA  GG  +    KRL  L +  +  W
Sbjct:   22 HASLQSLGVLFAIIGFYAIYTNKSIHGKPHFTSYHSYAGLLAFVL--AIVAPLGGAVSF---KRLGLLTRLPQQHW 92
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BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Match: A0A830HE37_9CHLO (Cytochrome b561 domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HE37_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-6
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    7 HSALSNLALLSMLGGLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVANVALAGGNTADLGKKRLVFLWQSRKHRW 234
            H++L +L +L  + G YAIY+NK + GK H+TS+H++ GL A  L  A VA  GG  +    KRL  L +  +  W
Sbjct:   74 HASLQSLGVLFAIIGFYAIYTNKSIHGKPHFTSYHSYAGLLAFVL--AIVAPLGGAVSF---KRLGLLTRLPQQHW 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9161.21225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L384_9PHAE9.710e-6271.88Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A812RVE1_9DINO3.730e-1740.87Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB... [more]
A0A7S1VDZ5_9EUKA4.360e-636.17Hypothetical protein n=2 Tax=Sexangularia sp. CB-2... [more]
A0A7S2F9S8_9CHLO4.670e-640.79Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A830HE37_9CHLO7.980e-640.79Cytochrome b561 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9161contigM-pyrifera_M_contig9161:154..976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue1.9e-49
Seed eggNOG ortholog2880.D7FZP2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Eukaryotic cytochrome b561
EggNOG OGs2D0D3@1,2SDR0@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.227181-CDS-M-pyrifera_M_contig9161:153..3831622816829.227181-CDS-M-pyrifera_M_contig9161:153..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9161 154..383 +
1692278203.0555215-CDS-M-pyrifera_M_contig9161:153..3831692278203.0555215-CDS-M-pyrifera_M_contig9161:153..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9161 154..383 +
1622816829.2444873-CDS-M-pyrifera_M_contig9161:822..9761622816829.2444873-CDS-M-pyrifera_M_contig9161:822..976Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9161 823..976 +
1692278203.072685-CDS-M-pyrifera_M_contig9161:822..9761692278203.072685-CDS-M-pyrifera_M_contig9161:822..976Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9161 823..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9161.21225.1prot_M-pyrifera_M_contig9161.21225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9161 154..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9161.21225.1

>prot_M-pyrifera_M_contig9161.21225.1 ID=prot_M-pyrifera_M_contig9161.21225.1|Name=mRNA_M-pyrifera_M_contig9161.21225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
QLHSALSNLALLSMLGGLYAIYSNKDLMGKDHWTSWHAWGGLFALALWVA
NVALAGGNTADLGKKRLVFLWQSRKHRWLGAAAYTATLGTVSSGFHSGWG
LRSLGGERGAWAMTAGVALMFLGVASQG
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mRNA from alignment at M-pyrifera_M_contig9161:154..976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9161.21225.1 ID=mRNA_M-pyrifera_M_contig9161.21225.1|Name=mRNA_M-pyrifera_M_contig9161.21225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=823bp|location=Sequence derived from alignment at M-pyrifera_M_contig9161:154..976+ (Macrocystis pyrifera P11B4 male)
CAGCTCCATAGCGCTCTGAGCAACCTGGCCCTCCTGTCCATGCTCGGCGG
GCTGTACGCCATCTACTCCAACAAGGACCTGATGGGGAAGGACCACTGGA
CCTCATGGCACGCCTGGGGCGGCCTGTTCGCGCTGGCCCTGTGGGTGGCC
AACGTCGCGCTCGCGGGGGGCAACACGGCCGACCTCGGCAAGAAGCGGCT
GGTGTTCTTGTGGCAGTCTAGGAAGCACAGGTGTGTACGGGAGTAGATCA
AAGCGACCAAGTACCGGTAGTTATTTGCAGTTGGTGGTATTAGTACGGAT
TTTGCCCTGATGTCTCTTTACCGTGCGATGATGCGCCAGGCAGTATGTAT
CAAGTATACTGCCAGCGTTCTACCAGTATGCCTTCCAGTGTACTGGCAGT
GCTCCTGGTGTATGCCTGGCCATACCGGTACCTCAGGCCTCAAGAGTACG
CCCCCGGTACCTCCGTGCAGGTAAGTTTTGCCCATAATATTGAATAGACC
CCAGTGTATGACAGTGCGCCATACATGCCCAAAGGAACTGCACCTACTGC
GAGGGAAAACAGTAGTCAGAACCTGTATGATGTGGTGTGTAAACACAAGT
ATGCATACTAATAGGGGGATACCATGGTTTCTGATATTTTATTGACCTCG
GTTTGTTGTCCGTCCGCAGGTGGCTCGGCGCGGCGGCGTACACTGCGACC
CTCGGCACTGTCTCATCGGGTTTCCACAGCGGCTGGGGACTGCGTTCCCT
CGGGGGAGAGAGGGGAGCTTGGGCCATGACCGCGGGCGTTGCACTTATGT
TTTTGGGCGTTGCTTCTCAGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9161:154..976+

>mRNA_M-pyrifera_M_contig9161.21225.1 ID=mRNA_M-pyrifera_M_contig9161.21225.1|Name=mRNA_M-pyrifera_M_contig9161.21225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig9161:154..976+ (Macrocystis pyrifera P11B4 male)
CAGCTCCATAGCGCTCTGAGCAACCTGGCCCTCCTGTCCATGCTCGGCGG
GCTGTACGCCATCTACTCCAACAAGGACCTGATGGGGAAGGACCACTGGA
CCTCATGGCACGCCTGGGGCGGCCTGTTCGCGCTGGCCCTGTGGGTGGCC
AACGTCGCGCTCGCGGGGGGCAACACGGCCGACCTCGGCAAGAAGCGGCT
GGTGTTCTTGTGGCAGTCTAGGAAGCACAGCAGCTCCATAGCGCTCTGAG
CAACCTGGCCCTCCTGTCCATGCTCGGCGGGCTGTACGCCATCTACTCCA
ACAAGGACCTGATGGGGAAGGACCACTGGACCTCATGGCACGCCTGGGGC
GGCCTGTTCGCGCTGGCCCTGTGGGTGGCCAACGTCGCGCTCGCGGGGGG
CAACACGGCCGACCTCGGCAAGAAGCGGCTGGTGTTCTTGTGGCAGTCTA
GGAAGCACAGGTGGCTCGGCGCGGCGGCGTACACTGCGACCCTCGGCACT
GTCTCATCGGGTTTCCACAGCGGCTGGGGACTGCGTTCCCTCGGGGGAGA
GAGGGGAGCTTGGGCCATGACCGCGGGCGTTGCACTTATGTTTTTGGGCG
TTGCTTCTCAGGGTGTGGCTCGGCGCGGCGGCGTACACTGCGACCCTCGG
CACTGTCTCATCGGGTTTCCACAGCGGCTGGGGACTGCGTTCCCTCGGGG
GAGAGAGGGGAGCTTGGGCCATGACCGCGGGCGTTGCACTTATGTTTTTG
GGCGTTGCTTCTCAGGGT
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