mRNA_M-pyrifera_M_contig916.21222.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig916.21222.1
Unique NamemRNA_M-pyrifera_M_contig916.21222.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig916.21222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig916contigM-pyrifera_M_contig916:21918..22482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.789523-CDS-M-pyrifera_M_contig916:21917..222201622816828.789523-CDS-M-pyrifera_M_contig916:21917..22220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 21918..22220 +
1692278202.7775898-CDS-M-pyrifera_M_contig916:21917..222201692278202.7775898-CDS-M-pyrifera_M_contig916:21917..22220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 21918..22220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.80224-UTR-M-pyrifera_M_contig916:22220..224821622816828.80224-UTR-M-pyrifera_M_contig916:22220..22482Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig916 22221..22482 +
1692278202.787313-UTR-M-pyrifera_M_contig916:22220..224821692278202.787313-UTR-M-pyrifera_M_contig916:22220..22482Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig916 22221..22482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig916.21222.1prot_M-pyrifera_M_contig916.21222.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig916 21918..22220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig916.21222.1

>prot_M-pyrifera_M_contig916.21222.1 ID=prot_M-pyrifera_M_contig916.21222.1|Name=mRNA_M-pyrifera_M_contig916.21222.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
SSPAPPNHPLHRPAHTSSTRVPSPPRYPPLLRRPPRTYRQQARPEKRYDH
NQRCQEEGRSPLDRQHIFPQLPSTNTKRPGFHCRVGHSALHCRQRTLSLA
*
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mRNA from alignment at M-pyrifera_M_contig916:21918..22482+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig916.21222.1 ID=mRNA_M-pyrifera_M_contig916.21222.1|Name=mRNA_M-pyrifera_M_contig916.21222.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=565bp|location=Sequence derived from alignment at M-pyrifera_M_contig916:21918..22482+ (Macrocystis pyrifera P11B4 male)
TCATCTCCAGCCCCACCCAATCATCCTCTTCACCGTCCTGCCCATACTTC
TTCTACCCGTGTACCCTCCCCCCCGCGATATCCTCCACTACTAAGACGTC
CGCCACGAACGTATCGGCAGCAGGCACGACCGGAGAAGCGCTATGACCAC
AACCAAAGATGCCAGGAGGAAGGACGCTCGCCCCTTGACAGGCAGCACAT
TTTTCCTCAGTTACCTTCGACCAACACAAAACGACCAGGCTTTCATTGTA
GAGTGGGACACTCGGCCCTACACTGTCGACAGCGCACGTTATCCCTTGCT
TGACATGTCTCCTGACATAATCTATCATAACGGGAAGCCGTGCTAAAAAT
ATGCAAAAATGTTGCCAACGTTTCCAACTCCCTCTCAGCCTCTTGGTACT
ACCGAAGAGGGCGTTCCGAGCCCCGTGGCACACCATGACACAAGCAAGCT
CACCCCACGAATCGAATCCTCCAATTCCTGGATGTTGAGCTAAATCGCTT
GTATGTGCGATTATTAATAATTGAAATGGTCAAGTAAATCGCGACACATA
CATCTTGCTCCCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig916:21918..22482+

>mRNA_M-pyrifera_M_contig916.21222.1 ID=mRNA_M-pyrifera_M_contig916.21222.1|Name=mRNA_M-pyrifera_M_contig916.21222.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig916:21918..22482+ (Macrocystis pyrifera P11B4 male)
TCATCTCCAGCCCCACCCAATCATCCTCTTCACCGTCCTGCCCATACTTC
TTCTACCCGTGTACCCTCCCCCCCGCGATATCCTCCACTACTAAGACGTC
CGCCACGAACGTATCGGCAGCAGGCACGACCGGAGAAGCGCTATGACCAC
AACCAAAGATGCCAGGAGGAAGGACGCTCGCCCCTTGACAGGCAGCACAT
TTTTCCTCAGTTACCTTCGACCAACACAAAACGACCAGGCTTTCATTGTA
GAGTGGGACACTCGGCCCTACACTGTCGACAGCGCACGTTATCCCTTGCT
TGATCATCTCCAGCCCCACCCAATCATCCTCTTCACCGTCCTGCCCATAC
TTCTTCTACCCGTGTACCCTCCCCCCCGCGATATCCTCCACTACTAAGAC
GTCCGCCACGAACGTATCGGCAGCAGGCACGACCGGAGAAGCGCTATGAC
CACAACCAAAGATGCCAGGAGGAAGGACGCTCGCCCCTTGACAGGCAGCA
CATTTTTCCTCAGTTACCTTCGACCAACACAAAACGACCAGGCTTTCATT
GTAGAGTGGGACACTCGGCCCTACACTGTCGACAGCGCACGTTATCCCTT
GCTTGA
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