mRNA_M-pyrifera_M_contig916.21219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig916.21219.1
Unique NamemRNA_M-pyrifera_M_contig916.21219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: D7G7V3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V3_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.220e-132
Identity = 184/227 (81.06%), Postives = 205/227 (90.31%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAAE 684
            RGVFYPGVFQFSLELSRY VPSWQEPLSVAVLTARAREFLFALEIGDTH+I+R+FR+CGER+G K WGRGPVLYGSVKEW+CPSRKSERKARNFG LLE+D +GGRGRP GAEGGYIF+GDTGEGDP AGE+M   HP+RMRAVFLHVVSD  +QGKV VP DR+VN VP+VYFRTY+GAAVKAV+LGLMD+ GL+NVI AAKE M KVP +SSKW DINRD+M A+
Sbjct:  128 RGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAMTKVPRQSSKWEDINRDLMMAQ 354          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A835YMG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG4_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.550e-69
Identity = 117/229 (51.09%), Postives = 151/229 (65.94%), Query Frame = 1
Query:    1 DRGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVK--VPPKSSKWVDINRDIMAA 681
            +RG FYPGVFQF LEL+ + VP    PL +AVLTARA+E LFALE+   H +S  +R+CG  +G + WG GP+LYGSVKEWIC +RKS RK +NF  L+E DG+    R    E  Y+F+GDTGEGD  AG  MC+  P  +RA+FLH+V       KV  P D  VNGVP+++F+TY+GAA KA + GL++R  ++ VI  A E +     P  SSKW D+  DI AA
Sbjct:   35 ERGQFYPGVFQFGLELAAHGVPRGLMPLPIAVLTARAKELLFALELDMEHPVSVAYRQCGAENGMEGWGLGPILYGSVKEWICWTRKSRRKVKNFRRLMELDGRNAIARGYMTE--YVFIGDTGEGDFKAGIKMCENFPRELRALFLHMVYCVDDVCKV--PEDYAVNGVPVLFFKTYVGAARKAYEAGLLNRYAVERVIAKAVEELEYSGAPRTSSKWSDLEADIEAA 259          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A835YPL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 9.780e-67
Identity = 116/229 (50.66%), Postives = 149/229 (65.07%), Query Frame = 1
Query:    1 DRGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIV-AAKEMMVKVPPKS-SKWVDINRDIMAA 681
            +RG FYPGVFQF+LEL+ +  P    PL VAVLTARA+EFLFALE+   H +S  +R+CG  +GF  WG GPVLYGSVKEWI  +RK  RK +NF  L+E DG     R  G    YIF+GDTGEGD  AG  MC+  P  +RA+F+H VS  +       P D  +NGVP+++F+TY+GAA KA + GLMD+AG+  VI  +  E+ +   P+  SKW D+  DI  A
Sbjct:   68 ERGQFYPGVFQFALELAAHGTPQGLLPLPVAVLTARAKEFLFALELKTEHPVSIAYRQCGTDNGFDGWGLGPVLYGSVKEWIVWTRKGRRKFKNFKRLMEIDGTHAAAR--GCATDYIFIGDTGEGDTKAGVKMCETFPRELRAMFMHAVSCDSEY--CITPDDYTINGVPVLFFKTYVGAARKAYEAGLMDKAGVQRVIDRSVMELELSGAPRDCSKWEDMEMDIEQA 292          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A7S4CYL7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CYL7_9EUGL)

HSP 1 Score: 220 bits (561), Expect = 5.470e-66
Identity = 115/227 (50.66%), Postives = 152/227 (66.96%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKS----SKWVDINRDI 672
            RG+FYPGVF+F LEL+ Y     + PLSVAVLTARAREFLFALE+ ++H I + FR+ G  SG + WG G VLYGSV+EW+C  RKS RK  NF +LL          P  A   ++FVGDTGE D  AGE+M +  P  M+A+FLHVV+         +PRD+++NG P+V+FRTY+GAA KAV+ GL+   GL  V+ AA+  + ++ P+S    S+W D+NRDI
Sbjct:  247 RGLFYPGVFRFMLELASYATT--EAPLSVAVLTARAREFLFALELDESHAICKAFRDTGRASGHEDWGIGEVLYGSVQEWVCQGRKSWRKVENFKLLLSS-------LPPDAARRFVFVGDTGELDQEAGEIMLEEFPSCMQALFLHVVAPDPALVPAPLPRDKLINGAPVVFFRTYVGAARKAVKYGLLGVDGLAAVVEAARADLERIEPESAGGSSRWADLNRDI 464          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A7S0UKK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKK8_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.440e-64
Identity = 113/228 (49.56%), Postives = 144/228 (63.16%), Query Frame = 1
Query:    1 DRGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAAE 684
            DRG FYPGV +F L LS+  +     P ++A+LTARA EF  ALEI +  K++   R  GE+ G   WG GPVLYGSV EWI   RK  RK  NF  L+E+D       P G    YI+VGDTGE D  AGE M   +PE M+AVFLHVV+D   +G   +P  +++NG P+++FRTY+GAA+ AVQLGLM   GL +VI AA E +  VP  S KW DI +D+  A+
Sbjct:   85 DRGDFYPGVGEFMLALSQCGLTEEVNPANIAILTARAEEFKAALEIKEGSKLAVALRSAGEKVGINGWGVGPVLYGSVAEWIAQDRKGLRKFTNFERLIEQD-------PTGTIFQYIYVGDTGELDQEAGETMLREYPEVMKAVFLHVVTDDV-EGPPLIPPPKLINGHPVIFFRTYVGAAIDAVQLGLMSLDGLQSVIEAATEKLSDVPENSDKWKDIRKDMARAD 304          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A6V2PZW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PZW2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.270e-64
Identity = 119/241 (49.38%), Postives = 150/241 (62.24%), Query Frame = 1
Query:    1 DRGVFYPGVFQFSLELSRYLV---PSWQE-----------PLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAA 681
            +RG FYPGVFQF LELS + +   P+  E           P  VAVLTARA EF  ALE+    K+++ FR+ GE++G + WG GPVLYGSV EW+   RK  RK  NF  L+E+D       P G    Y++VGDTGE D  AGE M   +PE ++AVFLHVVSDA       +P  +++NG PIV+FRTY+GAA KAVQLGLM   GL  VIV A+  +  VP  + KW+D+ RDI  A
Sbjct:   92 ERGDFYPGVFQFMLELSMHKLGEGPNESEGDDTGEEDRLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIEDWGLGPVLYGSVAEWVIQDRKGLRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFPR---IPPPKLINGRPIVFFRTYVGAAAKAVQLGLMYEEGLMRVIVEAEAALEGVPRSNEKWLDLERDISEA 322          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A1E7FEW2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.590e-63
Identity = 117/229 (51.09%), Postives = 145/229 (63.32%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRY--LVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAAE 684
            RG FYPGV +F L+LS Y  L      P ++A+LTARA EF  ALEI D  K+S   R  GE++G + WG GPVLYGSV EWI   RK  RK  NF  L+++D       P G    YI+VGD GE D  AGE M   +PE ++AVFLHVV+D A    + +P  + +NG PIV+FRTY+GAAV AVQLGLM+  GL +VI AA E +  VP  S KW DI +D+  AE
Sbjct:   94 RGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQD-------PAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPI-IPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRAE 314          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: A0A7S2IAS8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAS8_9STRA)

HSP 1 Score: 208 bits (529), Expect = 7.930e-63
Identity = 116/239 (48.54%), Postives = 146/239 (61.09%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRYLVPSWQE-------------PLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAA 681
            RG FYPGVFQF LELS   + +  +             P  VAVLTARA EF  ALE+    K+++ FR+ GE++G   WG GPVLYGSV EW+   RK  RK  NF  L+E+D       P G    Y++VGDTGE D  AGE M   +PE ++AVFLHVVSDA       VP  +++NG P+V+FRTY+GAA +AVQLGLM   GL  VIV A+  +  VP  + KW+D+ RDI  A
Sbjct:  105 RGEFYPGVFQFMLELSMPTLDNDDDENDTENEKSQFLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIDDWGLGPVLYGSVAEWVIQDRKGMRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFPR---VPPPKLINGRPVVFFRTYVGAAARAVQLGLMQEEGLMRVIVEAEAALKGVPTSNEKWLDLERDISEA 333          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: B7GD00_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD00_PHATC)

HSP 1 Score: 201 bits (511), Expect = 4.730e-60
Identity = 110/235 (46.81%), Postives = 144/235 (61.28%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRYLVPSWQ--------EPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKEMMVKVPPKSSKWVDINRDIMAAE 684
            RG  YPGV +F L++S  +  S           P  +A+LTARA EF  AL++ D   +    R+ GE +G  +WG GPVLYGSV EWI   RK  RK  NF  LL++D       P G    Y++VGDTGE D  AGE M   +PE ++AVFLHVV+D  + G V VP  +I+NG P+++FRTY+GAAV AVQLG M   GLD+VI A+ + +  VP +S KW D+ RDI  A+
Sbjct:  117 RGEMYPGVAEFMLQMSLGVASSPTVSNPALAVAPPKIAILTARAEEFKIALQLKDDSPLVMALRQAGETAGVSNWGVGPVLYGSVAEWIAQDRKGFRKFTNFERLLQQD-------PTGIIFQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVAD--KIGSVTVPPPKIINGRPVIFFRTYVGAAVAAVQLGFMSMDGLDSVIAASCQRLADVPRESDKWADLERDIARAQ 342          
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Match: W7UBU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBU9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.050e-59
Identity = 104/204 (50.98%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    4 RGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTHKISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLEEDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVVSDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVIVAAKE 615
            RG +YPG FQF+LELSR+ VP  +EP  VAVLTARAREF FALE+  +HK+ R +   G  +G + WG G VLYGSVKEW+C SRK  RK RNF  L  +D      R    +  Y+FVGDTGE D  AGE M  ++P R++A+F+H VS++  +     PRDR +  VP++YFRTY+GAAVKA +LGL+  +G++ V+    E
Sbjct:  138 RGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQD------RLDRTD--YVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSES--RPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLE 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig916.21219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V3_ECTSI1.220e-13281.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMG4_9STRA2.550e-6951.09Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YPL0_9STRA9.780e-6750.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4CYL7_9EUGL5.470e-6650.66Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0UKK8_9STRA5.440e-6449.56Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A6V2PZW2_9STRA7.270e-6449.38Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FEW2_9STRA1.590e-6351.09Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2IAS8_9STRA7.930e-6348.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B7GD00_PHATC4.730e-6046.81Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
W7UBU9_9STRA7.050e-5950.98Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig916contigM-pyrifera_M_contig916:5245..6726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.9
Seed ortholog evalue3.3e-105
Seed eggNOG ortholog2880.D7G7V3
Hectar predicted targeting categoryother localisation
EggNOG OGs2AJYC@1,2RZ89@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.8357184-CDS-M-pyrifera_M_contig916:5244..58591622816828.8357184-CDS-M-pyrifera_M_contig916:5244..5859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 5245..5859 +
1692278202.8088357-CDS-M-pyrifera_M_contig916:5244..58591692278202.8088357-CDS-M-pyrifera_M_contig916:5244..5859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 5245..5859 +
1622816828.8496714-CDS-M-pyrifera_M_contig916:6657..67261622816828.8496714-CDS-M-pyrifera_M_contig916:6657..6726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 6658..6726 +
1692278202.8224242-CDS-M-pyrifera_M_contig916:6657..67261692278202.8224242-CDS-M-pyrifera_M_contig916:6657..6726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig916 6658..6726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig916.21219.1prot_M-pyrifera_M_contig916.21219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig916 5245..6726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig916.21219.1

>prot_M-pyrifera_M_contig916.21219.1 ID=prot_M-pyrifera_M_contig916.21219.1|Name=mRNA_M-pyrifera_M_contig916.21219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
DRGVFYPGVFQFSLELSRYLVPSWQEPLSVAVLTARAREFLFALEIGDTH
KISRQFRECGERSGFKSWGRGPVLYGSVKEWICPSRKSERKARNFGMLLE
EDGQGGRGRPGGAEGGYIFVGDTGEGDPIAGEMMCDRHPERMRAVFLHVV
SDAARQGKVGVPRDRIVNGVPIVYFRTYIGAAVKAVQLGLMDRAGLDNVI
VAAKEMMVKVPPKSSKWVDINRDIMAAE
back to top

mRNA from alignment at M-pyrifera_M_contig916:5245..6726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig916.21219.1 ID=mRNA_M-pyrifera_M_contig916.21219.1|Name=mRNA_M-pyrifera_M_contig916.21219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at M-pyrifera_M_contig916:5245..6726+ (Macrocystis pyrifera P11B4 male)
GACCGTGGCGTGTTTTACCCGGGGGTGTTCCAGTTCTCGTTAGAGCTGTC GCGATATCTAGTGCCGTCCTGGCAAGAACCTCTTTCCGTGGCGGTGCTTA CGGCGAGGGCCCGAGAGTTCCTCTTCGCGCTGGAGATAGGCGACACGCAC AAAATATCGCGCCAGTTTCGGGAGTGCGGGGAGCGCAGCGGGTTCAAGTC TTGGGGGCGGGGCCCCGTGCTCTACGGGAGCGTGAAGGAGTGGATATGTC CCAGCCGAAAGAGCGAGAGAAAGGCCAGAAATTTCGGGATGCTCCTCGAG GAAGATGGACAAGGCGGTCGAGGCCGACCCGGCGGAGCAGAGGGAGGGTA CATTTTCGTCGGGGATACTGGGGAGGGTGACCCCATTGCCGGTGAGATGA TGTGTGACAGGCACCCCGAGCGGATGAGGGCGGTGTTTCTGCACGTGGTG AGCGACGCCGCGAGGCAGGGTAAGGTCGGCGTCCCTCGTGATCGGATCGT GAATGGGGTGCCGATCGTGTACTTTCGGACCTACATCGGCGCCGCGGTGA AGGCTGTGCAGCTGGGGCTGATGGACAGGGCGGGGTTGGACAACGTCATC GTCGCCGCCAAAGAGGTGAACCGAATGTTTGTATTCCGACCATCGGTTTT TGTTTTGTTCCTTCCCATTTAACATATTCGCCCTTCTTTTCTCTCTCTTC TCGTAACTCAGATAATCCGGGGTCATATAATAGGTTCCCCCCCCCCCCCT CCCCACTACGGTTCGTGCCTTGCATTTTTCTCGCGAGAAAAGGTCACACC TTTCTTCTCTCGCCGACTCGCGCCGAAAATGCATCTGTCCGGCTATATTC AAACACTGGTGTAGCCTAAAACTTGTTGATGGTTTACTCCCTCTGGTACC TGATATGTATGTTGTACTCTATCGATCCGATGTATGGTGGTATTTCTACT ACTGGCTGTGCTCTTGTTCTCTTTAGGGTGGAGGCGAGCTTTTCGTTTTT GTGAAATTCGACGTGCTCCAAGTTGAGGTGGTCTGAAGCGTCGTTTGGTT TGCCACGCATCGAGAACATAGGTTTAATGTAAGAAATGTGGTGCCGCGTG CATGTACAGATATTGGTTGGTAGTACGTGTTTATACCAGGTATCATGCTT CGATGCTACAGGCAGCGTACGCCTTCCCTCTGTCGAGGCCTGCGTCGTCG AGTTACTGTTATTGTGGCAGCCCCCACTATTGCTAATACGTTTCAACTAG GGTTAGTTTTTGTCAACCATGTGCTCACTGTGCCACAGCAGCAGTATATA CCCATACGTATGTATGTACAGTATACAGCATGTACGCACAATGGTTTGAA CCCGGAGCTACTGATGCCGCCACCCCCCCCCCCCCCGTCCAACCCTTTGC TCGCTTGGAATAGATGATGGTGAAGGTGCCTCCGAAATCATCCAAATGGG TGGACATTAACAGGGACATCATGGCGGCGGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig916:5245..6726+

>mRNA_M-pyrifera_M_contig916.21219.1 ID=mRNA_M-pyrifera_M_contig916.21219.1|Name=mRNA_M-pyrifera_M_contig916.21219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig916:5245..6726+ (Macrocystis pyrifera P11B4 male)
GACCGTGGCGTGTTTTACCCGGGGGTGTTCCAGTTCTCGTTAGAGCTGTC
GCGATATCTAGTGCCGTCCTGGCAAGAACCTCTTTCCGTGGCGGTGCTTA
CGGCGAGGGCCCGAGAGTTCCTCTTCGCGCTGGAGATAGGCGACACGCAC
AAAATATCGCGCCAGTTTCGGGAGTGCGGGGAGCGCAGCGGGTTCAAGTC
TTGGGGGCGGGGCCCCGTGCTCTACGGGAGCGTGAAGGAGTGGATATGTC
CCAGCCGAAAGAGCGAGAGAAAGGCCAGAAATTTCGGGATGCTCCTCGAG
GAAGATGGACAAGGCGGTCGAGGCCGACCCGGCGGAGCAGAGGGAGGGTA
CATTTTCGTCGGGGATACTGGGGAGGGTGACCCCATTGCCGGTGAGATGA
TGTGTGACAGGCACCCCGAGCGGATGAGGGCGGTGTTTCTGCACGTGGTG
AGCGACGCCGCGAGGCAGGGTAAGGTCGGCGTCCCTCGTGATCGGATCGT
GAATGGGGTGCCGATCGTGTACTTTCGGACCTACATCGGCGCCGCGGTGA
AGGCTGTGCAGCTGGGGCTGATGGACAGGGCGGGGTTGGACAACGTCATC
GTCGCCGCCAAAGAGGACCGTGGCGTGTTTTACCCGGGGGTGTTCCAGTT
CTCGTTAGAGCTGTCGCGATATCTAGTGCCGTCCTGGCAAGAACCTCTTT
CCGTGGCGGTGCTTACGGCGAGGGCCCGAGAGTTCCTCTTCGCGCTGGAG
ATAGGCGACACGCACAAAATATCGCGCCAGTTTCGGGAGTGCGGGGAGCG
CAGCGGGTTCAAGTCTTGGGGGCGGGGCCCCGTGCTCTACGGGAGCGTGA
AGGAGTGGATATGTCCCAGCCGAAAGAGCGAGAGAAAGGCCAGAAATTTC
GGGATGCTCCTCGAGGAAGATGGACAAGGCGGTCGAGGCCGACCCGGCGG
AGCAGAGGGAGGGTACATTTTCGTCGGGGATACTGGGGAGGGTGACCCCA
TTGCCGGTGAGATGATGTGTGACAGGCACCCCGAGCGGATGAGGGCGGTG
TTTCTGCACGTGGTGAGCGACGCCGCGAGGCAGGGTAAGGTCGGCGTCCC
TCGTGATCGGATCGTGAATGGGGTGCCGATCGTGTACTTTCGGACCTACA
TCGGCGCCGCGGTGAAGGCTGTGCAGCTGGGGCTGATGGACAGGGCGGGG
TTGGACAACGTCATCGTCGCCGCCAAAGAGATGATGGTGAAGGTGCCTCC
GAAATCATCCAAATGGGTGGACATTAACAGGGACATCATGGCGGCGGAAA
TGATGGTGAAGGTGCCTCCGAAATCATCCAAATGGGTGGACATTAACAGG
GACATCATGGCGGCGGAA
back to top