mRNA_M-pyrifera_M_contig91540.21212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91540.21212.1
Unique NamemRNA_M-pyrifera_M_contig91540.21212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A250X1X4_9CHLO (Rab-GAP TBC domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1X4_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-18
Identity = 49/118 (41.53%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDM 354
            LRR+L AY L NP VGY QG+N V A  LL++G DE    + L  LV  +L G ++S M   +V  +VF  LV+  FP +  +L   G++ S +  +W LC F++ +P ET  R+WD+
Sbjct:  192 LRRILAAYALRNPTVGYCQGLN-VLAGCLLMSGLDEEDAFYCLCTLVEDMLSGNYSSDMLATKVDTKVFRHLVQAEFPLVMRHLDSLGVDISCVFVQWFLCVFVNFLPHETCLRVWDL 308          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A654HPZ6_9CEST (Rab-GAP TBC domain-containing protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654HPZ6_9CEST)

HSP 1 Score: 87.0 bits (214), Expect = 7.080e-18
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRD----ERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            L+RVL+A+ +  P +GY QG+N+V A +LL+        E +T +LLH L   I+P  + SGM  V+V   VF  L+ ++ P++ + L+   ++  +L  +W +C F   VP ETV RI+D L
Sbjct:   60 LQRVLQAFAITFPKIGYCQGLNYVAATILLVLDGPPEEIEEKTFWLLHALTHNIVPAYYISGMVDVQVDCLVFEELLRQKVPSVYKVLKEANVDCIVLATKWFICLFADVVPMETVLRIFDSL 182          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A1Z5LH56_ORNMO (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LH56_ORNMO)

HSP 1 Score: 86.7 bits (213), Expect = 8.700e-18
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   10 VLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            +L AY   +   GY QG+NFV A LLL+T  D   T +LLH +VT+ILP  + S M  +    EV   L+  + P + E+LR  G+  +LL  +W +C F   +P ETV RIWD L
Sbjct:  139 ILAAYAHHHDSSGYCQGLNFV-AGLLLLTTEDADATFWLLHVMVTQILPDYYTSDMLGLLTDIEVLSELISTKAPQVYEHLRKHGVSWALLTTKWFVCLFAEVLPIETVLRIWDCL 253          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A0X3PWC5_SCHSO (Growth hormone-regulated TBC protein 1 n=4 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PWC5_SCHSO)

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-17
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRD----ERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            L+RVL+A+ +  P +GY QG+N+V A +LL+        E +T +LLH L   I+P  + SGM  V+V   VF  L+ ++ P++ + L+   ++  +L  +W +C F   VP ETV RI+D L
Sbjct:  152 LQRVLQAFAITFPKIGYCQGLNYVAATILLVLDGPAEEIEEKTFWLLHALTHNIVPAYYISGMVDVQVDCLVFEELLRQKVPSVYKVLKEANVDCIVLATKWFICLFADVVPMETVLRIFDCL 274          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A3F2RY14_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY14_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.340e-17
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWD 351
            LRR+LRAY L NP VGY QG+NF+ AFL+LI   DE    +LL      + PG +   M  ++    V   L+ E  P + E     G+   LL  +WLLC F +  P+ETV R++D
Sbjct:  186 LRRILRAYSLRNPSVGYCQGLNFIVAFLMLIA--DEEAVFWLLSVFCEDLYPGYYTPTMADIQTDMLVLKQLIAEELPQLDEFTSEVGLPLELLGSQWLLCLFTTTFPSETVFRVFD 300          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A3Q0KBH2_SCHMA (Gh regulated tbc protein-1, putative n=2 Tax=Schistosoma TaxID=6181 RepID=A0A3Q0KBH2_SCHMA)

HSP 1 Score: 85.5 bits (210), Expect = 2.350e-17
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLIT----GRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            L+RVL A+ +  P +GY QGMN++ A LLL+        E +  +LL  L+  ILP  ++S M  VRV   VF  L++++ PT+ + +   G+  +LL  +W +C F   +P ET  R++D L
Sbjct:  135 LKRVLSAFAVHFPKIGYCQGMNYIAAVLLLVLDCPPNEREVKAFWLLDALINHILPKYYSSDMLAVRVDCMVFNELLKDKIPTVHKIIMNSGITCTLLATKWFICLFADVLPIETTIRVFDCL 257          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A6A5D9M6_SCHHA (Putative gh regulated tbc protein-1 n=3 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A6A5D9M6_SCHHA)

HSP 1 Score: 86.3 bits (212), Expect = 2.760e-17
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLIT----GRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            L+RVL A+ +  P +GY QGMN++ A LLL+        E +  +LL  L+  ILP  ++S M  VRV   VF  L++++ PT+ + +   G+  +LL  +W +C F   +P ET  R++D L
Sbjct:  345 LKRVLSAFAVHFPKIGYCQGMNYIAAVLLLVLDCPPNEREVKAFWLLDALINHILPKYYSSDMLAVRVDCMVFNQLLKDKIPTVHKIIMNSGITCTLLATKWFICLFADVLPIETTIRVFDCL 467          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A7S3S9H9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S9H9_9SPIT)

HSP 1 Score: 85.9 bits (211), Expect = 2.790e-17
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILP-GVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWD 351
            LR VL AY   NP VGYVQGM F+ A LLL    DE    + L  +V R+LP   F+  +  +R     FG LV E+ P ++ +L   G+   L   RW + GF +++P  TV RIWD
Sbjct:  129 LRSVLLAYARRNPAVGYVQGMGFLAAVLLLFL--DEEAAFWCLCAIVERLLPESFFSPSLLGLRAELATFGALVSEKLPRLSRHLNEHGVVPELYATRWFIAGFATSLPMGTVLRIWD 244          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: A0A2D4CH29_PYTIN (Rab-GAP TBC domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH29_PYTIN)

HSP 1 Score: 85.5 bits (210), Expect = 5.200e-17
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDM 354
            LRRVL+AY L NP +GY Q MNF+ A LL     +E    ++L  ++  +LP   +  M   R    VF  LV ++ P +A++L+  G++ + + P+W LC FL+ +P  TV RIWD+
Sbjct:  246 LRRVLQAYCLRNPTIGYCQSMNFLGAVLL--QHLEEEEAFWVLVAMLEDLLPQFHSHSMLGSRAELRVFTDLVHQKLPALAQHLQALGVDLAPVTPKWFLCLFLNTLPLATVLRIWDV 361          
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Match: K3WIP8_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIP8_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 9.860e-17
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRILPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLLCGFLSAVPAETVARIWDML 357
            LRR+L+AY L NP +GY Q MNF+ A LL     +E    ++L  +V  + P   A  M   R    VF  LV+++ P++ ++++  G++      +W LC FL+ +P E V RIWD+L
Sbjct:  324 LRRILQAYSLRNPDIGYCQSMNFLAAILL--HHMEEEEAFWVLVAMVEELTPHYHARSMAGSRADQRVFSDLVQQKLPSLYQHMQHLGVDFEPFTLKWFLCSFLNTLPFEPVLRIWDLL 440          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91540.21212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A250X1X4_9CHLO1.820e-1841.53Rab-GAP TBC domain-containing protein n=1 Tax=Chla... [more]
A0A654HPZ6_9CEST7.080e-1837.40Rab-GAP TBC domain-containing protein n=2 Tax=Diph... [more]
A0A1Z5LH56_ORNMO8.700e-1842.24Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A0X3PWC5_SCHSO1.200e-1737.40Growth hormone-regulated TBC protein 1 n=4 Tax=Sch... [more]
A0A3F2RY14_9STRA2.340e-1741.03Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A3Q0KBH2_SCHMA2.350e-1736.59Gh regulated tbc protein-1, putative n=2 Tax=Schis... [more]
A0A6A5D9M6_SCHHA2.760e-1736.59Putative gh regulated tbc protein-1 n=3 Tax=Schist... [more]
A0A7S3S9H9_9SPIT2.790e-1741.53Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2D4CH29_PYTIN5.200e-1738.98Rab-GAP TBC domain-containing protein n=2 Tax=Pyth... [more]
K3WIP8_GLOUD9.860e-1736.97Rab-GAP TBC domain-containing protein n=1 Tax=Glob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91540contigM-pyrifera_M_contig91540:218..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score97.4
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog51337.XP_004663433.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Rab-GTPase-TBC domain
EggNOG OGs39P65@33154,3CQR1@33208,3E6YJ@33213,3JQE0@40674,48SKW@7711,49P4G@7742,COG5210@1,KOG2058@2759
COG Functional cat.U
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.4612808-CDS-M-pyrifera_M_contig91540:217..5741622816828.4612808-CDS-M-pyrifera_M_contig91540:217..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91540 218..574 +
1692278202.563834-CDS-M-pyrifera_M_contig91540:217..5741692278202.563834-CDS-M-pyrifera_M_contig91540:217..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91540 218..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91540.21212.1prot_M-pyrifera_M_contig91540.21212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91540 218..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91540.21212.1

>prot_M-pyrifera_M_contig91540.21212.1 ID=prot_M-pyrifera_M_contig91540.21212.1|Name=mRNA_M-pyrifera_M_contig91540.21212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
LRRVLRAYVLLNPGVGYVQGMNFVCAFLLLITGRDERRTLFLLHGLVTRI
LPGVFASGMPTVRVAGEVFGMLVEERFPTIAENLRLGGMEASLLLPRWLL
CGFLSAVPAETVARIWDML
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mRNA from alignment at M-pyrifera_M_contig91540:218..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91540.21212.1 ID=mRNA_M-pyrifera_M_contig91540.21212.1|Name=mRNA_M-pyrifera_M_contig91540.21212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig91540:218..574+ (Macrocystis pyrifera P11B4 male)
CTTCGTCGTGTTTTACGAGCTTATGTACTGCTGAATCCTGGTGTGGGATA TGTACAGGGGATGAACTTTGTGTGTGCATTCTTGCTACTCATTACAGGAC GTGATGAACGTCGCACTTTATTCTTGTTGCATGGACTGGTGACCAGAATC CTCCCTGGAGTGTTTGCTTCCGGGATGCCTACAGTGCGTGTTGCTGGGGA AGTGTTTGGAATGCTGGTAGAAGAGCGATTTCCTACAATTGCAGAAAATT TACGCTTGGGAGGAATGGAAGCATCCCTCTTGCTACCTCGCTGGTTACTG TGTGGATTCTTGAGTGCAGTTCCAGCAGAAACTGTAGCACGCATTTGGGA TATGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91540:218..574+

>mRNA_M-pyrifera_M_contig91540.21212.1 ID=mRNA_M-pyrifera_M_contig91540.21212.1|Name=mRNA_M-pyrifera_M_contig91540.21212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig91540:218..574+ (Macrocystis pyrifera P11B4 male)
CTTCGTCGTGTTTTACGAGCTTATGTACTGCTGAATCCTGGTGTGGGATA
TGTACAGGGGATGAACTTTGTGTGTGCATTCTTGCTACTCATTACAGGAC
GTGATGAACGTCGCACTTTATTCTTGTTGCATGGACTGGTGACCAGAATC
CTCCCTGGAGTGTTTGCTTCCGGGATGCCTACAGTGCGTGTTGCTGGGGA
AGTGTTTGGAATGCTGGTAGAAGAGCGATTTCCTACAATTGCAGAAAATT
TACGCTTGGGAGGAATGGAAGCATCCCTCTTGCTACCTCGCTGGTTACTG
TGTGGATTCTTGAGTGCAGTTCCAGCAGAAACTGTAGCACGCATTTGGGA
TATGCTTCTTCGTCGTGTTTTACGAGCTTATGTACTGCTGAATCCTGGTG
TGGGATATGTACAGGGGATGAACTTTGTGTGTGCATTCTTGCTACTCATT
ACAGGACGTGATGAACGTCGCACTTTATTCTTGTTGCATGGACTGGTGAC
CAGAATCCTCCCTGGAGTGTTTGCTTCCGGGATGCCTACAGTGCGTGTTG
CTGGGGAAGTGTTTGGAATGCTGGTAGAAGAGCGATTTCCTACAATTGCA
GAAAATTTACGCTTGGGAGGAATGGAAGCATCCCTCTTGCTACCTCGCTG
GTTACTGTGTGGATTCTTGAGTGCAGTTCCAGCAGAAACTGTAGCACGCA
TTTGGGATATGCTT
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