mRNA_M-pyrifera_M_contig91534.21209.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91534.21209.1
Unique NamemRNA_M-pyrifera_M_contig91534.21209.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: D8SQG1_SELML (DUF1115 domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SQG1_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 5.840e-21
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    7 RLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRA 204
            +LFWFHH+KS +K+K IV+WGKEL + G CKPG+PG+L +E  +    EY KR++ L W+A+++RA
Sbjct:   88 KLFWFHHIKSTRKRKCIVEWGKELRVGGYCKPGFPGILIIEAEDTNITEYVKRVRHLRWQAMNLRA 153          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: D8T8P0_SELML (RWD domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T8P0_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 1.610e-20
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    7 RLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRA 204
            +LFWFHH+KS +K+K IV+WGKEL + G CKPG+PG+L +E  +    EY KR++ L W+A+++RA
Sbjct:  141 KLFWFHHIKSTRKRKCIVEWGKELRVGGYCKPGFPGILIIEAEDTNITEYVKRVRHLRWQAMNLRA 206          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A2R6W4N6_MARPO (DUF1115 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W4N6_MARPO)

HSP 1 Score: 89.0 bits (219), Expect = 1.870e-20
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 GFRLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRAE 207
            G  L WFHH+KS KKK+DI +WG EL+L G CKPG+PGVL  EG      EY +R+K L W+ + +R +
Sbjct:   79 GRTLIWFHHIKSSKKKRDIKEWGAELNLGGYCKPGFPGVLIFEGDAENVAEYVRRIKRLRWQHLQIRGQ 147          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: E3KKK4_PUCGT (DUF1115 domain-containing protein n=2 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3KKK4_PUCGT)

HSP 1 Score: 84.0 bits (206), Expect = 5.960e-18
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   10 LFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVR 201
            +FW HH+K+  K+K+IV W +EL + G  KPGYPG L ++GP+    EY++RLKAL WKAI  R
Sbjct:  113 VFWMHHIKATGKRKNIVAWARELGIRGWSKPGYPGALIIDGPKTAVEEYSQRLKALRWKAIQQR 176          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A1Y1Y5X7_9FUNG (DUF1115-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y5X7_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-17
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 GFRLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVR 201
            G  L W HH+K+  K+KDIV WG+EL L G  KPGYPG++ VEG      EY  RLKAL W+AI VR
Sbjct:  209 GRALLWMHHIKNPNKRKDIVNWGEELQLNGFSKPGYPGIVVVEGLYENVEEYISRLKALRWQAIAVR 275          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A8J4LLZ4_9CHLO (DUF1115 domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LLZ4_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 1.820e-17
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRAE 207
            L W HHLKS  K+K IVQW +EL L G CKPGYPGV+ VEG      E+ +R+++LSW+A+ VR +
Sbjct:  232 LVWLHHLKSATKRKLIVQWARELQLGGACKPGYPGVVVVEGHSDDVREFLQRMRSLSWQAMQVRGQ 297          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A2N5TVD1_9BASI (DUF1115 domain-containing protein n=4 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TVD1_9BASI)

HSP 1 Score: 83.2 bits (204), Expect = 2.310e-17
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   10 LFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVR 201
            +FW HH+K+  K+K+IV W +EL + G  KPGYPG L ++GP+    EY+ RLKAL WKAI  R
Sbjct:  179 VFWMHHIKATGKRKNIVGWARELGIRGWSKPGYPGALVIDGPQAAVEEYSARLKALRWKAIQQR 242          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A0L0VJQ5_9BASI (RWD domain-containing protein n=4 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VJQ5_9BASI)

HSP 1 Score: 82.0 bits (201), Expect = 3.980e-17
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   10 LFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVR 201
            +FW HH+K+  K+K+IV+W +EL++ G  KPGYPGV+ ++G +    EY KR+K L WKAI  R
Sbjct:  150 VFWMHHIKATSKRKNIVEWARELEIRGWSKPGYPGVVIIDGSKESIDEYCKRMKGLKWKAIQQR 213          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: C1EJE7_MICCC (DUF1115 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJE7_MICCC)

HSP 1 Score: 82.4 bits (202), Expect = 4.380e-17
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 GFRLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRA 204
            G RL WFHH+KSGKK+K + +W  EL + G  K GYPGV  VEG    C E+ +RL+ L W A+ VRA
Sbjct:  203 GRRLVWFHHVKSGKKRKKMREWSAELSVDGVVKCGYPGVCVVEGEVQACDEFVRRLRGLGWSAMSVRA 270          
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Match: A0A2J8A7J8_9CHLO (RWD domain-containing protein 2B (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A7J8_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 4.480e-17
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   10 LFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCVEYTKRLKALSWKAIDVRAE 207
            L W HHLKS  K+K IVQW +EL L G CKPG+PGV+ VEG      E+  R++AL+W+A+ VR +
Sbjct:  212 LVWLHHLKSLAKRKLIVQWARELSLAGACKPGFPGVVIVEGHSSDVAEFLARMRALTWQAMQVRGQ 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91534.21209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8SQG1_SELML5.840e-2153.03DUF1115 domain-containing protein n=1 Tax=Selagine... [more]
D8T8P0_SELML1.610e-2053.03RWD domain-containing protein n=2 Tax=Selaginella ... [more]
A0A2R6W4N6_MARPO1.870e-2052.17DUF1115 domain-containing protein n=1 Tax=Marchant... [more]
E3KKK4_PUCGT5.960e-1853.13DUF1115 domain-containing protein n=2 Tax=Puccinia... [more]
A0A1Y1Y5X7_9FUNG1.200e-1756.72DUF1115-domain-containing protein n=1 Tax=Basidiob... [more]
A0A8J4LLZ4_9CHLO1.820e-1754.55DUF1115 domain-containing protein n=3 Tax=Volvox r... [more]
A0A2N5TVD1_9BASI2.310e-1753.13DUF1115 domain-containing protein n=4 Tax=Puccinia... [more]
A0A0L0VJQ5_9BASI3.980e-1750.00RWD domain-containing protein n=4 Tax=Puccinia str... [more]
C1EJE7_MICCC4.380e-1752.94DUF1115 domain-containing protein n=1 Tax=Micromon... [more]
A0A2J8A7J8_9CHLO4.480e-1753.03RWD domain-containing protein 2B (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91534contigM-pyrifera_M_contig91534:102..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.9
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog88036.EFJ06957
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1115)
EggNOG OGs28IR6@1,2QR2G@2759,37WZM@33090,3GPYV@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.3002167-CDS-M-pyrifera_M_contig91534:101..3081622816828.3002167-CDS-M-pyrifera_M_contig91534:101..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91534 102..308 -
1692278202.479845-CDS-M-pyrifera_M_contig91534:101..3081692278202.479845-CDS-M-pyrifera_M_contig91534:101..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91534 102..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91534.21209.1prot_M-pyrifera_M_contig91534.21209.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91534 102..308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91534.21209.1

>prot_M-pyrifera_M_contig91534.21209.1 ID=prot_M-pyrifera_M_contig91534.21209.1|Name=mRNA_M-pyrifera_M_contig91534.21209.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
GFRLFWFHHLKSGKKKKDIVQWGKELDLIGQCKPGYPGVLYVEGPEVGCV
EYTKRLKALSWKAIDVRAE
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mRNA from alignment at M-pyrifera_M_contig91534:102..308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91534.21209.1 ID=mRNA_M-pyrifera_M_contig91534.21209.1|Name=mRNA_M-pyrifera_M_contig91534.21209.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig91534:102..308- (Macrocystis pyrifera P11B4 male)
GGATTTCGATTGTTTTGGTTTCACCACTTGAAGAGTGGGAAGAAGAAGAA AGATATTGTGCAATGGGGGAAAGAATTAGACTTGATAGGGCAATGTAAAC CTGGATACCCAGGTGTATTGTACGTGGAAGGTCCTGAAGTTGGATGTGTG GAGTATACAAAGAGGTTGAAGGCTTTGTCTTGGAAAGCCATTGATGTAAG AGCAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91534:102..308-

>mRNA_M-pyrifera_M_contig91534.21209.1 ID=mRNA_M-pyrifera_M_contig91534.21209.1|Name=mRNA_M-pyrifera_M_contig91534.21209.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig91534:102..308- (Macrocystis pyrifera P11B4 male)
GGATTTCGATTGTTTTGGTTTCACCACTTGAAGAGTGGGAAGAAGAAGAA
AGATATTGTGCAATGGGGGAAAGAATTAGACTTGATAGGGCAATGTAAAC
CTGGATACCCAGGTGTATTGTACGTGGAAGGTCCTGAAGTTGGATGTGTG
GAGTATACAAAGAGGTTGAAGGCTTTGTCTTGGAAAGCCATTGATGTAAG
AGCAGAAGGATTTCGATTGTTTTGGTTTCACCACTTGAAGAGTGGGAAGA
AGAAGAAAGATATTGTGCAATGGGGGAAAGAATTAGACTTGATAGGGCAA
TGTAAACCTGGATACCCAGGTGTATTGTACGTGGAAGGTCCTGAAGTTGG
ATGTGTGGAGTATACAAAGAGGTTGAAGGCTTTGTCTTGGAAAGCCATTG
ATGTAAGAGCAGAA
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