mRNA_M-pyrifera_M_contig91528.21207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91528.21207.1
Unique NamemRNA_M-pyrifera_M_contig91528.21207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A2D5GRG8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GRG8_9PLAN)

HSP 1 Score: 88.6 bits (218), Expect = 7.530e-19
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGT 210
            AGA+SV+A+LW +PD++TA+LME FF NLA G  K++AL  AQLS +      N   HP+FWAAFTLTG+
Sbjct: 1280 AGAQSVVASLWSIPDQETALLMEEFFSNLAQGMHKSKALRQAQLSRIQSRRERNGAAHPFFWAAFTLTGS 1349          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A6I6A7N8_9PLAN (CHAT domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A7N8_9PLAN)

HSP 1 Score: 85.1 bits (209), Expect = 1.240e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGTNK 216
            AGAESV+A+LW +PD++TA+LME +F NLA G  K+ AL  AQL  +      N   HP+FWAAFT TG N+
Sbjct: 1287 AGAESVVASLWSIPDQETALLMEEYFSNLAQGMKKSTALRQAQLKRIQARRDRNGAAHPFFWAAFTHTGKNE 1358          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A2D5GRG1_9PLAN (CHAT domain-containing protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GRG1_9PLAN)

HSP 1 Score: 84.7 bits (208), Expect = 1.690e-17
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTG 207
            AGAES++++LWQV D +TA LM+ FF+NLA G+ K+EAL  +QL+ + +    N   HP+FWAAFTLTG
Sbjct: 1086 AGAESIVSSLWQVEDNETAKLMDLFFKNLADGKTKSEALRQSQLTRIKIRRERNGAAHPFFWAAFTLTG 1154          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A2E7KGD5_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGD5_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 2.320e-17
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGTN 213
            AG  SV+A+LW++ D QTA LM+ FFE+LAAG+ K+EAL  AQL+ +      N   HP+FWAAFTLTG++
Sbjct: 1130 AGVNSVVASLWKIEDRQTAFLMKDFFEHLAAGKTKSEALRQAQLNRIESRQERNGAAHPFFWAAFTLTGSD 1200          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A518JQ89_9BACT (Photosystem I assembly protein Ycf3 n=2 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JQ89_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 4.330e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTG 207
            AGAE+V ATLW +PD+ T  LM+ FF NLA+G+ KA+AL +AQ S++    R     HPYFWAAFTLTG
Sbjct: 1330 AGAEAVAATLWTIPDDATVSLMQTFFANLASGKRKAQALCDAQRSIIDQRRRIAGVAHPYFWAAFTLTG 1398          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A3D3RB62_9PLAN (CHAT domain-containing protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RB62_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 5.720e-17
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGTN 213
            AG  SV+A+LW++ D QTA LM+ FFE LAAG+ K+EAL  AQL+ +      N   HP+FWAAFTLTG++
Sbjct:  481 AGVNSVVASLWKIEDRQTAFLMKDFFEYLAAGKTKSEALRQAQLNRIQSRQERNGAAHPFFWAAFTLTGSD 551          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A518C2M6_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C2M6_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 2.810e-16
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTG 207
            AGA+SV+ATLW VPD  +AI+M  FF+NLAAG+ K+EAL +AQL  +        + HP++WAA+T+TG
Sbjct: 1367 AGAQSVVATLWTVPDRDSAIIMNDFFQNLAAGKNKSEALRSAQLRRIESRRERYGSAHPFYWAAWTVTG 1435          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A354H169_9BACT (CHAT domain-containing protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354H169_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 5.180e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTG 207
            AGA +V ATLWQ+PD ++A LM  FF NL  G+ KAEAL  AQL+++      N   HP+FWAA+TLTG
Sbjct:  745 AGARAVAATLWQIPDRESAKLMGDFFANLGDGKPKAEALREAQLAMIQSRREKNAAAHPFFWAAYTLTG 813          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A2S8F8J5_9BACT (CHAT domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F8J5_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 2.480e-15
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGT 210
            AGAE++++TLWQVPD  +A+LM+ FFE LA G+   EAL  AQ+  +    +     HP++WAA+TLTGT
Sbjct:  993 AGAEAIVSTLWQVPDRDSALLMKDFFEQLAEGKSHPEALRQAQIKRIESRRQRYGAAHPFYWAAWTLTGT 1062          
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Match: A0A518C892_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C892_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 3.400e-15
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLLGRHNNTTHPYFWAAFTLTGT 210
            AGA+ V++TLW VPD  +AI+M  FF  LA G+ KAEAL +AQL  +        T HP++WAA+TLTG+
Sbjct: 1204 AGAQGVVSTLWSVPDRDSAIIMNDFFAGLAEGKSKAEALRSAQLKRIESRRERYGTAHPFYWAAWTLTGS 1273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91528.21207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5GRG8_9PLAN7.530e-1957.14Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A6I6A7N8_9PLAN1.240e-1754.17CHAT domain-containing protein n=7 Tax=Gimesia Tax... [more]
A0A2D5GRG1_9PLAN1.690e-1755.07CHAT domain-containing protein n=3 Tax=Gimesia Tax... [more]
A0A2E7KGD5_9PLAN2.320e-1754.93Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A518JQ89_9BACT4.330e-1757.97Photosystem I assembly protein Ycf3 n=2 Tax=Rosist... [more]
A0A3D3RB62_9PLAN5.720e-1754.93CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A518C2M6_9BACT2.810e-1653.62Photosystem I assembly protein Ycf3 n=1 Tax=Bremer... [more]
A0A354H169_9BACT5.180e-1655.07CHAT domain-containing protein n=1 Tax=Planctomyce... [more]
A0A2S8F8J5_9BACT2.480e-1550.00CHAT domain-containing protein n=2 Tax=Pirellulace... [more]
A0A518C892_9BACT3.400e-1551.43Photosystem I assembly protein Ycf3 n=1 Tax=Bremer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91528contigM-pyrifera_M_contig91528:513..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog1123508.JH636440_gene2532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tetratricopeptide repeat
EggNOG OGs2J07X@203682,COG0457@1,COG0457@2,COG4995@1,COG4995@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.2338254-CDS-M-pyrifera_M_contig91528:512..7311622816828.2338254-CDS-M-pyrifera_M_contig91528:512..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91528 513..731 -
1692278202.4512463-CDS-M-pyrifera_M_contig91528:512..7311692278202.4512463-CDS-M-pyrifera_M_contig91528:512..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91528 513..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91528.21207.1prot_M-pyrifera_M_contig91528.21207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91528 513..731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91528.21207.1

>prot_M-pyrifera_M_contig91528.21207.1 ID=prot_M-pyrifera_M_contig91528.21207.1|Name=mRNA_M-pyrifera_M_contig91528.21207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
AGAESVLATLWQVPDEQTAILMEYFFENLAAGQGKAEALHNAQLSLMGLL
GRHNNTTHPYFWAAFTLTGTNK*
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mRNA from alignment at M-pyrifera_M_contig91528:513..731-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91528.21207.1 ID=mRNA_M-pyrifera_M_contig91528.21207.1|Name=mRNA_M-pyrifera_M_contig91528.21207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig91528:513..731- (Macrocystis pyrifera P11B4 male)
GCGGGTGCCGAGTCTGTGCTGGCGACGCTGTGGCAAGTGCCTGACGAACA GACGGCCATCCTGATGGAGTACTTCTTCGAGAACCTCGCCGCCGGACAGG GAAAAGCAGAGGCGTTGCATAACGCCCAACTCTCGCTCATGGGTCTCCTT GGACGCCACAACAACACTACGCATCCCTACTTCTGGGCCGCATTCACGCT CACTGGGACTAATAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91528:513..731-

>mRNA_M-pyrifera_M_contig91528.21207.1 ID=mRNA_M-pyrifera_M_contig91528.21207.1|Name=mRNA_M-pyrifera_M_contig91528.21207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig91528:513..731- (Macrocystis pyrifera P11B4 male)
GCGGGTGCCGAGTCTGTGCTGGCGACGCTGTGGCAAGTGCCTGACGAACA
GACGGCCATCCTGATGGAGTACTTCTTCGAGAACCTCGCCGCCGGACAGG
GAAAAGCAGAGGCGTTGCATAACGCCCAACTCTCGCTCATGGGTCTCCTT
GGACGCCACAACAACACTACGCATCCCTACTTCTGGGCCGCATTCACGCT
CACTGGGACTAATAAGTAGGCGGGTGCCGAGTCTGTGCTGGCGACGCTGT
GGCAAGTGCCTGACGAACAGACGGCCATCCTGATGGAGTACTTCTTCGAG
AACCTCGCCGCCGGACAGGGAAAAGCAGAGGCGTTGCATAACGCCCAACT
CTCGCTCATGGGTCTCCTTGGACGCCACAACAACACTACGCATCCCTACT
TCTGGGCCGCATTCACGCTCACTGGGACTAATAAGTAG
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