mRNA_M-pyrifera_M_contig91513.21206.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91513.21206.1
Unique NamemRNA_M-pyrifera_M_contig91513.21206.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: F0ZXL6_DICPU (Major vault protein-alpha n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZXL6_DICPU)

HSP 1 Score: 84.0 bits (206), Expect = 6.010e-17
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1
Query:  103 SVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYC 264
            SV RIKPF YIHV DNN+  T V VGP+TFTRQ+H+K+V GP+AM+++P R YC
Sbjct:    6 SVIRIKPFHYIHVLDNNTNVTRVEVGPQTFTRQDHEKLVSGPDAMIMIPQRHYC 59          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: A0A7S3GA40_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GA40_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 6.020e-17
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  103 SVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            SV RI P+ Y+HV DNN+  T+V VGP+TFTRQEH+++V GP AM+ +PPRSYC+
Sbjct:    6 SVIRIAPYYYVHVLDNNTNVTKVEVGPKTFTRQEHERIVAGPLAMITIPPRSYCV 60          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: A0A814NCW8_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814NCW8_ADIRI)

HSP 1 Score: 83.2 bits (204), Expect = 8.870e-17
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   97 SGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            SG VYRI PF YIHV D N+  T + VGP+TF +Q+H+KV+ GP  M+I+PPR YC+
Sbjct:    7 SGGVYRIPPFYYIHVLDQNTNVTRIEVGPKTFVKQDHEKVIYGPERMIIIPPRHYCV 63          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: F4QCT9_CAVFA (Major vault protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QCT9_CAVFA)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-16
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   91 NASGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYC 264
            +A+ SV RIKP++YIHV DNN+  T V +GP TFTRQ+H+KVV GP+ M+++P R+YC
Sbjct:    2 DATNSVIRIKPYQYIHVLDNNTNVTRVEIGPNTFTRQDHEKVVAGPDPMIMIPLRNYC 59          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: UPI00077AF4E3 (major vault protein-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AF4E3)

HSP 1 Score: 77.0 bits (188), Expect = 2.460e-16
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   97 SGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            S S+YRI P+ YIHV D N+  T+V VGP+TF RQ+++KV+ GP  M+ +PPR YCI
Sbjct:   12 SESIYRIPPYYYIHVLDQNTNVTKVEVGPKTFIRQDNEKVILGPEKMITIPPRHYCI 68          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: A0A6T2IB22_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T2IB22_9EUGL)

HSP 1 Score: 81.6 bits (200), Expect = 3.900e-16
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   64 GKGKANKSDNASGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            G  ++  S++  G V R+KP++YIHV DNNS  + V++GP TFTRQEH+ +++ P   + +PPR YC+
Sbjct:   18 GSDESGSSEDFGGDVVRLKPYQYIHVHDNNSNCSHVILGPATFTRQEHEHILNQPQQCIAIPPRHYCV 85          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: A0A152A1Y2_9MYCE (Major vault protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A1Y2_9MYCE)

HSP 1 Score: 81.3 bits (199), Expect = 5.320e-16
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query:  103 SVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYC 264
            SV RIKP+++IHV DNNS  T + +GP+TFTRQ+H+K++ GP  MV +PPR+YC
Sbjct:    6 SVIRIKPYQFIHVLDNNSSVTRIEIGPQTFTRQDHEKIILGPENMVQIPPRNYC 59          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: UPI001425763E (major vault protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425763E)

HSP 1 Score: 81.3 bits (199), Expect = 5.330e-16
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   67 KGKANKSDNASGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            KGK   +  +  S+YRI P+ Y+HV D NS  T V +GPRT+ RQ+H++V+ GP  M++VPPR+YCI
Sbjct:    3 KGKRTTA-GSDDSIYRIPPYYYVHVLDQNSNVTRVEIGPRTYIRQDHERVIFGPQKMIMVPPRNYCI 68          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: A0A814G561_ADIRI (Major vault protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814G561_ADIRI)

HSP 1 Score: 80.9 bits (198), Expect = 7.270e-16
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   97 SGSVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI 267
            SG VYRI PF YIHV D N+  T + VGP+TF +Q+H+ V+ GP  M+I+PPR YC+
Sbjct:    7 SGGVYRIPPFYYIHVLDQNANVTRIEVGPKTFVKQDHETVIYGPERMIIIPPRHYCV 63          
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Match: MVPA_DICDI (Major vault protein alpha n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MVPA_DICDI)

HSP 1 Score: 80.9 bits (198), Expect = 7.270e-16
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  103 SVYRIKPFEYIHVADNNSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYC 264
            SV RIKPF +IHV DNN+  T V VGP+TFTRQ+H+K+V GP  M+++P R+YC
Sbjct:    6 SVIRIKPFHFIHVLDNNTNVTRVEVGPQTFTRQDHEKLVSGPEPMIMIPQRNYC 59          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91513.21206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZXL6_DICPU6.010e-1764.81Major vault protein-alpha n=1 Tax=Dictyostelium pu... [more]
A0A7S3GA40_9EUKA6.020e-1761.82Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A814NCW8_ADIRI8.870e-1757.89Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
F4QCT9_CAVFA1.120e-1658.62Major vault protein n=1 Tax=Cavenderia fasciculata... [more]
UPI00077AF4E32.460e-1656.14major vault protein-like n=1 Tax=Acropora digitife... [more]
A0A6T2IB22_9EUGL3.900e-1645.59Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A152A1Y2_9MYCE5.320e-1659.26Major vault protein n=1 Tax=Tieghemostelium lacteu... [more]
UPI001425763E5.330e-1650.75major vault protein-like n=1 Tax=Anneissia japonic... [more]
A0A814G561_ADIRI7.270e-1656.14Major vault protein n=3 Tax=Adineta ricciae TaxID=... [more]
MVPA_DICDI7.270e-1661.11Major vault protein alpha n=1 Tax=Dictyostelium di... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91513contigM-pyrifera_M_contig91513:453..777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog5786.XP_003292154.1
Preferred nameMVP
KEGG koko:K17266
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001775,GO:0001932,GO:0001933,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0006469,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0012505,GO:0016043,GO:0016192,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0031099,GO:0031102,GO:0031175,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031952,GO:0031953,GO:0031974,GO:0031982,GO:0031983,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032940,GO:0033554,GO:0033673,GO:0034774,GO:0036230,GO:0038127,GO:0042119,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043549,GO:0044092,GO:0044238,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045859,GO:0045936,GO:0046903,GO:0048468,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0060205,GO:0060255,GO:0060322,GO:0061097,GO:0061099,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0072376,GO:0080090,GO:0097708,GO:0099503,GO:0101002,GO:0120036,GO:1901564,GO:1904813
EggNOG free text desc.Major vault protein alpha
EggNOG OGs2CM9A@1,2QPP0@2759,3XG62@554915
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.1918366-CDS-M-pyrifera_M_contig91513:452..6531622816828.1918366-CDS-M-pyrifera_M_contig91513:452..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91513 453..653 +
1692278202.4211254-CDS-M-pyrifera_M_contig91513:452..6531692278202.4211254-CDS-M-pyrifera_M_contig91513:452..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91513 453..653 +
1622816828.2052324-CDS-M-pyrifera_M_contig91513:711..7771622816828.2052324-CDS-M-pyrifera_M_contig91513:711..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91513 712..777 +
1692278202.434627-CDS-M-pyrifera_M_contig91513:711..7771692278202.434627-CDS-M-pyrifera_M_contig91513:711..777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91513 712..777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91513.21206.1prot_M-pyrifera_M_contig91513.21206.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91513 453..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91513.21206.1

>prot_M-pyrifera_M_contig91513.21206.1 ID=prot_M-pyrifera_M_contig91513.21206.1|Name=mRNA_M-pyrifera_M_contig91513.21206.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
SVPASRELPVVPASEGIEEMFGKGKANKSDNASGSVYRIKPFEYIHVADN
NSGATEVVVGPRTFTRQEHQKVVDGPNAMVIVPPRSYCI
back to top

mRNA from alignment at M-pyrifera_M_contig91513:453..777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91513.21206.1 ID=mRNA_M-pyrifera_M_contig91513.21206.1|Name=mRNA_M-pyrifera_M_contig91513.21206.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=325bp|location=Sequence derived from alignment at M-pyrifera_M_contig91513:453..777+ (Macrocystis pyrifera P11B4 male)
TCTGTTCCAGCGAGCAGAGAGCTTCCAGTCGTCCCCGCCAGCGAAGGGAT TGAAGAAATGTTTGGCAAGGGCAAGGCCAACAAGTCGGACAACGCTAGCG GCAGCGTGTACCGCATCAAGCCGTTCGAGTACATCCATGTCGCCGACAAC AACAGCGGCGCCACAGAGGTCGTCGTTGGCCCGCGCACCTTCACTCGCCA GGTACTCCTCAATCCCCACACTCTCTTTTCGCTGCCCACGACTGACCCAT TTTCTACAGGAGCACCAGAAGGTCGTTGATGGCCCCAATGCCATGGTGAT CGTTCCTCCCAGGAGCTACTGCATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig91513:453..777+

>mRNA_M-pyrifera_M_contig91513.21206.1 ID=mRNA_M-pyrifera_M_contig91513.21206.1|Name=mRNA_M-pyrifera_M_contig91513.21206.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig91513:453..777+ (Macrocystis pyrifera P11B4 male)
TCTGTTCCAGCGAGCAGAGAGCTTCCAGTCGTCCCCGCCAGCGAAGGGAT
TGAAGAAATGTTTGGCAAGGGCAAGGCCAACAAGTCGGACAACGCTAGCG
GCAGCGTGTACCGCATCAAGCCGTTCGAGTACATCCATGTCGCCGACAAC
AACAGCGGCGCCACAGAGGTCGTCGTTGGCCCGCGCACCTTCACTCGCCA
GTCTGTTCCAGCGAGCAGAGAGCTTCCAGTCGTCCCCGCCAGCGAAGGGA
TTGAAGAAATGTTTGGCAAGGGCAAGGCCAACAAGTCGGACAACGCTAGC
GGCAGCGTGTACCGCATCAAGCCGTTCGAGTACATCCATGTCGCCGACAA
CAACAGCGGCGCCACAGAGGTCGTCGTTGGCCCGCGCACCTTCACTCGCC
AGGAGCACCAGAAGGTCGTTGATGGCCCCAATGCCATGGTGATCGTTCCT
CCCAGGAGCTACTGCATCGAGCACCAGAAGGTCGTTGATGGCCCCAATGC
CATGGTGATCGTTCCTCCCAGGAGCTACTGCATC
back to top