mRNA_M-pyrifera_M_contig91509.21204.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91509.21204.1
Unique NamemRNA_M-pyrifera_M_contig91509.21204.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A7C7YHY6_9DELT (SDR family oxidoreductase n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YHY6_9DELT)

HSP 1 Score: 152 bits (385), Expect = 2.010e-44
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 HHVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            H VKRNIIVNAIAPGPFPTWMLSTGVGGGGDV+ TDWD+V R NPRGRVGTP+DI GLAIFLSSRA AFTVGEVISCDGG LV+
Sbjct:  183 HLVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVEATDWDAVGRVNPRGRVGTPEDIAGLAIFLSSRASAFTVGEVISCDGGTLVS 266          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A4P5S458_9ACTN (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5S458_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 2.010e-44
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    7 VKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            VKR IIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWD+V+R NPR RVGTP+DI GLAIFLSSRAGAFTVGEVISCDGG LV+
Sbjct:  185 VKRKIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDAVARTNPRRRVGTPEDIAGLAIFLSSRAGAFTVGEVISCDGGSLVS 266          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A2E0RUX6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RUX6_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 3.110e-44
Identity = 65/79 (82.28%), Postives = 77/79 (97.47%), Query Frame = 1
Query:   13 RNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILV 249
            RNIIVNAIAPGPFPTWMLSTGVGGGGDV+NTDWD++++ NPRGRVGTP+DI GLAIFL+SRAGA+TVGE+I+CDGG++V
Sbjct:   12 RNIIVNAIAPGPFPTWMLSTGVGGGGDVENTDWDALAQTNPRGRVGTPEDIAGLAIFLASRAGAYTVGEIITCDGGVVV 90          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A3B8YYZ2_9DELT (3-oxoacyl-ACP reductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3B8YYZ2_9DELT)

HSP 1 Score: 151 bits (381), Expect = 8.290e-44
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 HHVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            H VKRN+I NAIAPGPFPTWMLSTGVGGGGDV+NTDWD+V+R NPR RVGT +DI GLAIFLSSRAG+FTVGEVI+CDGG+L+N
Sbjct:  183 HLVKRNVICNAIAPGPFPTWMLSTGVGGGGDVENTDWDAVARTNPRQRVGTAEDIAGLAIFLSSRAGSFTVGEVITCDGGVLIN 266          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A2E6LS87_9GAMM (3-oxoacyl-ACP reductase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LS87_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 1.830e-42
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 HHVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            H VK NI+VNAIAPGPFPT+MLSTGVGG GDV+NTDWD+V RGNPRGRVGTPQDI G+AIFLSSRAGAFTVG+VI CDGG +V+
Sbjct:  182 HLVKENILVNAIAPGPFPTYMLSTGVGGRGDVENTDWDAVGRGNPRGRVGTPQDIAGIAIFLSSRAGAFTVGDVIVCDGGSVVS 265          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A6I2ZL99_9ACTN (SDR family oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A6I2ZL99_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 3.670e-42
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    7 VKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            VKR I+VNAIAPGPFPTWMLSTGVGGGGDV+ TDWD+V R NPR RVGTP+DI GLAIFLSSRAGAFTVGEVI CDGGI+++
Sbjct:  185 VKRKILVNAIAPGPFPTWMLSTGVGGGGDVEGTDWDAVGRTNPRKRVGTPEDIAGLAIFLSSRAGAFTVGEVIKCDGGIVIS 266          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A524BA18_9ACTN (3-oxoacyl-ACP reductase n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524BA18_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 5.190e-42
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    7 VKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            VKRNII+NAIAPGPFPTWMLSTGVG GGDVDNTDW  V+RGNPR RVGTP+DI GLAIFL SRAGA+TVGEVISCDGG +V+
Sbjct:  185 VKRNIIMNAIAPGPFPTWMLSTGVGTGGDVDNTDWSVVARGNPRKRVGTPEDIAGLAIFLCSRAGAYTVGEVISCDGGTVVS 266          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A4R7HXE3_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HXE3_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 5.190e-42
Identity = 65/79 (82.28%), Postives = 76/79 (96.20%), Query Frame = 1
Query:   13 RNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILV 249
            RN+IVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDS++  NPRGRVGTP+DI GL+IFL+SRAGA+TVGE+I+CDGG++V
Sbjct:  187 RNVIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSLALTNPRGRVGTPEDIAGLSIFLASRAGAYTVGEIITCDGGVVV 265          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A6P2BGX7_9GAMM (SDR family oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BGX7_9GAMM)

HSP 1 Score: 145 bits (366), Expect = 1.470e-41
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 HHVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN 252
            H VK NI+VNAIAPGPFPT+MLSTGVGGGGDVD TDWD V RGNPRGRVGT +DI G+AIFLSSRA AFTVGEVI+CDGG +V+
Sbjct:  182 HLVKENILVNAIAPGPFPTYMLSTGVGGGGDVDQTDWDGVGRGNPRGRVGTAEDIAGIAIFLSSRASAFTVGEVITCDGGSVVS 265          
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Match: A0A6J7SZ98_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7SZ98_9ZZZZ)

HSP 1 Score: 141 bits (355), Expect = 1.670e-41
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVGTPQDITGLAIFLSSRAGAFTVGEVISCDGG 240
            VKRNII NAIAPGPFPT+MLSTG+G GGDV+ TDWD++ RGNPR RVGTPQDI GLAIFLSSRAGAFTVGEVI CDGG
Sbjct:   55 VKRNIIANAIAPGPFPTYMLSTGIGTGGDVEGTDWDALGRGNPRKRVGTPQDIAGLAIFLSSRAGAFTVGEVIKCDGG 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91509.21204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C7YHY6_9DELT2.010e-4486.90SDR family oxidoreductase n=2 Tax=Myxococcales bac... [more]
A0A4P5S458_9ACTN2.010e-4489.022-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Actino... [more]
A0A2E0RUX6_9ACTN3.110e-4482.28Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3B8YYZ2_9DELT8.290e-4482.143-oxoacyl-ACP reductase n=1 Tax=Deltaproteobacteri... [more]
A0A2E6LS87_9GAMM1.830e-4282.143-oxoacyl-ACP reductase n=2 Tax=Gammaproteobacteri... [more]
A0A6I2ZL99_9ACTN3.670e-4282.93SDR family oxidoreductase n=2 Tax=root TaxID=1 Rep... [more]
A0A524BA18_9ACTN5.190e-4284.153-oxoacyl-ACP reductase n=1 Tax=Acidimicrobiales b... [more]
A0A4R7HXE3_9ACTN5.190e-4282.28NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
A0A6P2BGX7_9GAMM1.470e-4180.95SDR family oxidoreductase n=1 Tax=Gammaproteobacte... [more]
A0A6J7SZ98_9ZZZZ1.670e-4184.62Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91509contigM-pyrifera_M_contig91509:3..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score127.9
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog1121949.AQXT01000002_gene2928
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
EggNOG OGs1MVYJ@1224,2TRJ8@28211,43WQ5@69657,COG1028@1,COG1028@2
COG Functional cat.IQ
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.1228237-CDS-M-pyrifera_M_contig91509:2..2571622816828.1228237-CDS-M-pyrifera_M_contig91509:2..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91509 3..257 +
1692278202.391453-CDS-M-pyrifera_M_contig91509:2..2571692278202.391453-CDS-M-pyrifera_M_contig91509:2..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91509 3..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91509.21204.1prot_M-pyrifera_M_contig91509.21204.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91509 3..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91509.21204.1

>prot_M-pyrifera_M_contig91509.21204.1 ID=prot_M-pyrifera_M_contig91509.21204.1|Name=mRNA_M-pyrifera_M_contig91509.21204.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
HHVKRNIIVNAIAPGPFPTWMLSTGVGGGGDVDNTDWDSVSRGNPRGRVG
TPQDITGLAIFLSSRAGAFTVGEVISCDGGILVN*
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mRNA from alignment at M-pyrifera_M_contig91509:3..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91509.21204.1 ID=mRNA_M-pyrifera_M_contig91509.21204.1|Name=mRNA_M-pyrifera_M_contig91509.21204.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig91509:3..257+ (Macrocystis pyrifera P11B4 male)
CACCACGTGAAGCGCAACATCATCGTGAACGCCATCGCTCCCGGACCCTT TCCCACCTGGATGCTCAGCACCGGTGTCGGTGGCGGCGGCGACGTCGACA ACACCGACTGGGACTCGGTGTCACGCGGCAACCCTCGCGGCCGTGTCGGC ACCCCGCAAGACATCACCGGCCTCGCCATCTTCCTGAGCTCGCGGGCCGG TGCCTTCACCGTCGGTGAAGTGATCAGCTGCGACGGCGGCATCCTCGTCA ACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91509:3..257+

>mRNA_M-pyrifera_M_contig91509.21204.1 ID=mRNA_M-pyrifera_M_contig91509.21204.1|Name=mRNA_M-pyrifera_M_contig91509.21204.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig91509:3..257+ (Macrocystis pyrifera P11B4 male)
CACCACGTGAAGCGCAACATCATCGTGAACGCCATCGCTCCCGGACCCTT
TCCCACCTGGATGCTCAGCACCGGTGTCGGTGGCGGCGGCGACGTCGACA
ACACCGACTGGGACTCGGTGTCACGCGGCAACCCTCGCGGCCGTGTCGGC
ACCCCGCAAGACATCACCGGCCTCGCCATCTTCCTGAGCTCGCGGGCCGG
TGCCTTCACCGTCGGTGAAGTGATCAGCTGCGACGGCGGCATCCTCGTCA
ACTGACACCACGTGAAGCGCAACATCATCGTGAACGCCATCGCTCCCGGA
CCCTTTCCCACCTGGATGCTCAGCACCGGTGTCGGTGGCGGCGGCGACGT
CGACAACACCGACTGGGACTCGGTGTCACGCGGCAACCCTCGCGGCCGTG
TCGGCACCCCGCAAGACATCACCGGCCTCGCCATCTTCCTGAGCTCGCGG
GCCGGTGCCTTCACCGTCGGTGAAGTGATCAGCTGCGACGGCGGCATCCT
CGTCAACTGA
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