mRNA_M-pyrifera_M_contig9148.21201.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9148.21201.1
Unique NamemRNA_M-pyrifera_M_contig9148.21201.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9148.21201.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.580e-56
Identity = 104/151 (68.87%), Postives = 122/151 (80.79%), Query Frame = 1 
Query:    1 MGRLNSLIKFVVVNANVLLFLGGVGIIVVVSLVLTADFAKLAEEYIRVRGVAMLVVGVLVTIMSIIGCMGTNRQIQRDRTWSGRRILSLYQLILVAVVVCQGIAQTRLYSIEARCLEEAAEGLPDEFGVLEGRLRSGFNEAYFDQLCAAES 453
            MG+LNS IKFVV NAN LLFLGGVGI++V SL+L ADF KLA+ Y++  G+  ++VG+LV  MSIIGC+GTNRQI+RDR WSGRRILSLYQLILVAVVV QG+ Q RLYSIE   LEEAA  LP + G  EGR R GFNEAYF+QLC+A +
Sbjct:    1 MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVS-LEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSASA 150
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BLAST of mRNA_M-pyrifera_M_contig9148.21201.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI)

HSP 1 Score: 73.9 bits (180), Expect = 8.450e-13
Identity = 47/148 (31.76%), Postives = 84/148 (56.76%), Query Frame = 1 
Query:    1 MGRLNSLIKFVVVNANVLLFLGGVGIIVVVSLVLTADFAKLAEEYIRVRGVAMLVVGVLVTIMSIIGCMGTNRQIQRDRTWSGRRILSLYQLILVAVVVCQGIAQTRLYSIEARCLEEAAEGLPD-----EFGVLEGRLRSGFNEAYF 429
            MGRLN++IK++V+N N++     +  I++  LV+ +D+  L   +     + +++  VL+ ++S++GCMG + Q ++   W+GRRIL+LYQL L+A ++      T+L  I  R L+     L       ++G  E  +   FNE +F
Sbjct:    1 MGRLNNMIKWLVMNVNLIYAAVALVSIILAVLVMVSDWGSLDRGFFLGWCIVVILFSVLILMISLLGCMGVSHQSEQLSCWTGRRILALYQLSLLATIIGNLWMVTKLI-ILVRGLDATYSDLTSADDTVDYGRFEEAVADRFNEFFF 147
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BLAST of mRNA_M-pyrifera_M_contig9148.21201.1 vs. uniprot
Match: UPI00094E7C4C (23 kDa integral membrane protein-like isoform X1 n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E7C4C)

HSP 1 Score: 54.3 bits (129), Expect = 8.880e-6
Identity = 37/108 (34.26%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    1 MGRLNSLIKFVVVNANVLLFLGGVGIIVVVSLVLT--ADFAKLAEEYIRVRGVAMLVVGVLVTIMSIIGCMGTNRQIQRDRTWSGRRILSLYQLILVAVVVCQGIAQT 318
            MG    ++K V+   N+ L L G+GII+  +L+LT  ADF ++AE  +    VAM+V GVLVTI++ +GC+G  R+  +        +L+++ ++ + V +C  + +T
Sbjct:    1 MGVGVQMMKTVLFIFNIFLTLSGIGIIIAGALILTQMADFNRIAESDLVKMAVAMIVGGVLVTIVAFVGCLGAMRESYKLLMTFAGLLLAVF-IMELTVGICAAVFKT 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9148.21201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ08_ECTSI2.580e-5668.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812W7H9_SYMMI8.450e-1331.76Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
UPI00094E7C4C8.880e-634.2623 kDa integral membrane protein-like isoform X1 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9148contigM-pyrifera_M_contig9148:203..5719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue3.3e-48
Seed eggNOG ortholog2880.D8LQ08
Hectar predicted targeting categorysignal anchor
EggNOG OGs2EQYQ@1,2STVK@2759
Ec32 ortholog descriptionTetraspanin/Peripherin
Ec32 orthologEc-15_001390.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size462
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9148.21201.1prot_M-pyrifera_M_contig9148.21201.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9148 203..5719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.8686218-CDS-M-pyrifera_M_contig9148:202..3201622816827.8686218-CDS-M-pyrifera_M_contig9148:202..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 203..320 -
1692278202.1924536-CDS-M-pyrifera_M_contig9148:202..3201692278202.1924536-CDS-M-pyrifera_M_contig9148:202..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 203..320 -
1622816827.8847609-CDS-M-pyrifera_M_contig9148:1894..20031622816827.8847609-CDS-M-pyrifera_M_contig9148:1894..2003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 1895..2003 -
1692278202.207822-CDS-M-pyrifera_M_contig9148:1894..20031692278202.207822-CDS-M-pyrifera_M_contig9148:1894..2003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 1895..2003 -
1622816827.8982677-CDS-M-pyrifera_M_contig9148:3203..33091622816827.8982677-CDS-M-pyrifera_M_contig9148:3203..3309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 3204..3309 -
1692278202.2262669-CDS-M-pyrifera_M_contig9148:3203..33091692278202.2262669-CDS-M-pyrifera_M_contig9148:3203..3309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 3204..3309 -
1622816827.9096394-CDS-M-pyrifera_M_contig9148:5590..57191622816827.9096394-CDS-M-pyrifera_M_contig9148:5590..5719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 5591..5719 -
1692278202.2416975-CDS-M-pyrifera_M_contig9148:5590..57191692278202.2416975-CDS-M-pyrifera_M_contig9148:5590..5719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9148 5591..5719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9148.21201.1

>prot_M-pyrifera_M_contig9148.21201.1 ID=prot_M-pyrifera_M_contig9148.21201.1|Name=mRNA_M-pyrifera_M_contig9148.21201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
MGRLNSLIKFVVVNANVLLFLGGVGIIVVVSLVLTADFAKLAEEYIRVRG
VAMLVVGVLVTIMSIIGCMGTNRQIQRDRTWSGRRILSLYQLILVAVVVC
QGIAQTRLYSIEARCLEEAAEGLPDEFGVLEGRLRSGFNEAYFDQLCAAE
SAW*
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mRNA from alignment at M-pyrifera_M_contig9148:203..5719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9148.21201.1 ID=mRNA_M-pyrifera_M_contig9148.21201.1|Name=mRNA_M-pyrifera_M_contig9148.21201.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5517bp|location=Sequence derived from alignment at M-pyrifera_M_contig9148:203..5719- (Macrocystis pyrifera P11B4 male)
ATGGGGAGGCTCAACAGCTTGATCAAGTTCGTCGTCGTGAACGCCAATGT
CTTGCTCTTCCTCGGAGGAGTTGGGATTATTGTCGTGGTCTCTCTCGTCC
TTACGGCGGATTTCGCCAAGCTTGCCGAGGTATACACGCATGCACCTTAC
GTGCCAGGTGGCCAGCCCTACGAATACAGCAGCAGCAGTTGATAGGAAAG
GATTCACGCGCCGCAGATACGATATACCGGTACTTCTGTACGTTGATTCG
TACCTGGTATTTTTAATGAGAAAACAAGCAAAACATCAGCCGTGGACGTG
AAACCAACATGCAAGCGACGTGAATTTTAGTCTACCCTGGTATGATAGTG
CAGATGATCACGTCAAATACCGTAAGTCACGATTGGGCTGGTCTCAAACA
AAACAAAGATCCTGGAATAATAAACCCTGAGTTGACTTCGTGTCGACGGC
TGTTGTTTATGCTTGTTTTTTATCAGCAGAGAACAGTTGGCCTCGTACTG
TACGAGTCCTTGTTTGAGTATGGCGTATCACTGCAGTACTGTGTATGGAA
TGTACCAGGTACAGCAGTACACATGTACGAACGTACAAATAATACTATTT
ACGGGGGACAATATTAAATAGGACCTACGATGCACACAAAAAAATAAATA
TTTACCTATTTTTACTAGCAATATTTGGTCCTATTTACTATGTCCCCCGC
AATAGGTACTCGCATTGAAAGCCACGACAAGTAGGACCAATTGTCCACGT
ACCTGGTACAGTATACGAGTGTACCAGGTACGTAAATGACACTCTGTTGG
CACGACCATCCGTGGCGCCTACTTGATCACTTGCGGTCACTCGTAGTCCG
AGTCTAAACCGTTCTCATTGGATGAAGAAGTGGTTATCGCAAAGACGCAG
CTTGTAAAGTACCTATTACGGGGGTACATAGTTAACAGGACCTACGGTGT
CCATAAAAACCTATATATTTGCCTATTTTTAAGAACAAAATTTGGTCCCG
TTAACTATGGACCTCCGTAATACCTGTTCTACCAGCGTGCATCGATTATA
CATACGTTCAAGGTCCAACTCGGTACCAATCAAATGCCGGACGATACCTG
GTACCTGGTCCCTGGTACAAACCAAACGAGCTATCAGGTATGTATTTGGC
CGGGGAAAATATAGTCTACGTAACCTCCTTTTGGAATAGCGGGATGTGTA
TACCTGGTACGAGTACGTACTCACTTAACCCTTTTAGAATTGCAGTCCTG
TTTTGGGGACAAACTACTTAGAGTTTGACTGGTTTGCCCCCAAAACGGGA
CTGCGGTACGTACAGGGTTAAAGCACCAGACTTAATGATACGGTTATCAA
ACAGGTGTTGTTGTACTCCCGCCCACAAGGAGTAATTACTTGCAGAAGAC
CGTGCGCGTTTGGAGAAGAAAAAAACGAACTCAACCCCCCCGAAATTCCA
CCGTACTCACAACACTCCACCAAAACCACATCGGCCCGGCGACCGCGACA
ACCTGTAGACGGCGTGCCACGAAACAAGTCCCACGCGTTGTCATCCCCAA
CCCACCCGGTTCTGTAGACACCGATTTTGTCGAAATCGGCCTCGTACAGC
TCTCGATATCAGCGAAACCAAGTATGTTACACACAGCGTAAATAGGAGAC
AGCTACGAGTACAGTACATAGACTACACAAAATGTGATACGTACTGTAGT
GGAAGCCTGTACGCACCCCGGAATGAAGGGGCTTTCTTGTCTTTTATAGG
CAAAAAGCGACCTCGTTAAGAGCAACAACGTCTGTAATAGTTCCGCGCCA
GCCCATTGAAACTTCCCCCTTGGTTTGGGAACAAATCACGTGCCGCACTT
GGGATTAACTTGCCCATTTTTTCTCCTTTTTTTGTAGAAGTTTGTTACAA
CATGGCTGCTTTTACTCCCGTTCCTGCCGGAGTACTCCCACGGAACGGAA
CAGCGGCGCAATAGTTTCGCCAGGCCTTTTGGGACCTGGCCAACGAATAC
TATATATTATGTATGTATTCGTAGTTTTATTTGCTCAGGACGGACCATGC
CCTGCATGCGCCTTCCTGTGGTTCATGCCTTGGTACCTGGTACGTGGTTG
CACGGTCCCTGTACGAGTACGTAAAATGTAAGGAACATTTGGGTGTCACC
ACTGTACTTGTAATATGATACACTAAAGGTCCTTACATTTCCGAACAGAG
CGGTGACCATTTCGTTACCTGTATTGCTGTTGTACCCGTACGTGCGTACT
TCAGCTGCTGACTGTACTCCACACCTCTGCGCCATGAAATACACAAACGG
TCCTTACATTTTCGAACATAATGGACAGTTATTTCGTAACGAGTACCACC
GGGTAGTTTTTTTATGCTGACTGCACTGCTGCACACCCTGCACCCTCCCT
GTCCCCCCAGGAATACATCAGAGTTCGCGGAGTGGCGATGCTGGTCGTTG
GCGTGCTGGTGACCATCATGTCCATCATTGGCTGCATGGGCACCAACCGA
CAGATACAGCGGGATCGTGAGTAGGACGAAGTTGCGCGGTGCCTCTCGAC
GTGTAGATCAAAGGCCGAGGCTCACAACCTAGAGGGATGGTGCGAATCGA
GGTTCTGCACACGTTTCTGTTCTCACAGAGACGGAACCTCGACAAACACC
ATTTCTATGGTAGCAACTCTTCGTGCATGTTACTGGTCCAGTCCATAGGC
ACTTTGCAGTGGCAGTATCAGCAGCAGTCCCGTACCAGGTACGTCTGCAG
CCTATCAGCAGAATCCTGTACTCCCCATCGGAACGCTGGTCGGCAACAAA
AGGCGTTTATCTGTATACGGTATACCGTTGGTACAGGCCATGTATGCATT
GCCGCTTTCCGTCAGTTTCCCTCCGGAAGTTCCAACATGGTTGTTGCCTC
CTTTTTGGCGGGCAGCATGCACACACACATCACGTGCGGTCCTCGTCCGG
CCTTTTTACGCAGCAGCTGACAGCCTTTTTGAACGGATCGGCCCCAATAG
CGCGTACACACGCGAGCGAGCGGCTGAACATACCTTCGGTCGGTTTGTTG
ATCTTACGTTGTTGGCTGCAATGCATTGTTCGAGTAATTCACACATATTT
CAGAACGGACGCGTCACCGATGCACCAATTTACAACCCGGAGCATCGACC
CCCCCCCTTCCCTGCCAAAACGCACAGCTGCCGGCGCCTTTGTGACATCT
TATAGAACAAAATGATGCCCCCCCACCGGTAGTGCTGTACTGTACGTACG
AGTAGCACTTCACGTCCTTTAGCATTACTACGTACTGCACGCACGCTTTG
GGACGGTTCTCGGCGTTTCTGAGGACAAATTACTTGGAATCAAGCAAGGT
ATAATTTTTGCAGCTAGCTGTAAAATATGGGTGTACGTTCTTCTCACTTG
TTTTCGTGCAACCCAGTGCTGATTGGTTGATCTATTGATCTATTGAATGG
TTGGTTGGTTGATTGGTTGATCGATTGATTGATTGATTGATTGATTGATT
GATTGATTGATTGGTTGATTGATCGATTGATTGATTGATGGATTGATAGA
TTGATATATTGATGGATTAGTTGATTCATTGGTTGATTGGTTGGTTCATC
GAATGATTGATCGATTGATCGATTGATTGATTGATTGATTCCTTGATCGA
TTGATCGATTGATGCCTTCTCGCCTCACGCGCCCCAATGCTGCGCGCTGA
CGCTGCACCACGTCAGGCACCTGGAGCGGACGCCGGATTCTAAGCCTGTA
CCAGCTTATCCTCGTCGCAGTTGTGGTGTGCCAAGGGATCGCCCAGACAA
GGCTCTACAGCATTGAGGCAAGATGGTATCGGGGTTGTTATGATTGGGTG
CACACACAAGTCGGGTTCCCAAAAAAAAAACTGGTACTACTGTAGGTAAT
AGTTTTTTCAGTTTGGGCCTTTTATTCTCGTCGCGGAAAGCGCGATAGCG
TGAGGCAGCAAACAAATCGGTAAAAATCGACGAGCGGTGGGAATGCTGAG
CGATCCCCTCTGCACGATAAAAAAAGGAGGCAATAACCAGGCGGCGAGAA
GGAAAGAAAGACACCTGTGACCACGGCTTGTCCGGAGAGCCAGAAAGTAA
AAGTGATAGCTGAACATACAAAAAAAATGGTGTCGTCTCATATAGTAGTG
TTGCCGGGTACAGGGTGGGATGCTTGCTGCACGCAAAAAAAAGGTTGATT
TTCGTGGGGTTTCTGTCTGGCAGGCACACGCAGCAGAAGTTGTTGTTGGA
GTAGACTCTGGTTGTGTTGGAATGAGGTATTCCGAAAGAATTTTATGATA
CTTGGCCGCTGCAGTTGACCGGACGGGGGGGGGAGGGGGGCGGGTGTAGG
TCGACATCCGTAGCTCGAGAGCAACTACACGGCCTTGTGCGATTCTTTCC
CACGCCCGGGTGGTGTAGTAGGTTTAGGTTGTACCTTCCGTATTTACCTC
GAGACAACAGGGCGCCCAATGGTTCCACGAGGCGATCGTCACTGATTTAG
TTTTTTCTTCGTATAGACCTCGGCCCTGAATGCTCGCACCTGCTACTGAC
CGCTGTGTTTCCCGCTCTCGCAGCAAGGGAGTATATACACCAAGTAGAAA
ATACACTATTCCGTGCAGAAACATAGGGTAGGTTTGCATAGAACTGTTGA
ATCCAAACGGTCTTTTTTTATTTGTGCACAGAGTGGTGTACGCTTCGTTG
ATGTTGGTACGTACCAGGTACACACATTGTTGTGAGTGCGCTTGCCGTCC
GACATTGTGCAAGCATGAGCTTCAACGTTGCATCACTCAGAAACATCCCC
CGAATAAAGAAGGAACACCAAGAAGGGGCGCCAAAAACAAGGAAACCTAT
TGGTACCAGGCTACAGTACCCTACTGGACTACAGTAGCTTCAACGTTGCA
TCTCTCATATTACGGGGGACCAAAGTAAATAGGACTAAATATTGTTAGTA
AAAACGAGGAAATGTACGTGTTTTTGTCTGTACCGTAGGTCCTATTTACT
GTGTTCCTGCCCCCCGTAATAAAACGTTCTCCGAAAGAAGAGGAAGATCG
AGAAGGAGAACGAAAAAAAAGGAACAAACCTATGCACGACGTCTTCGTCC
CTTCTATACCTTCTACTTCCTGGTTAGTCTCTATCTGCATTCAACTGATG
TCCTCGCTAGACCCTTCTCAGTGCATGTTCCTCTCATTTCTAGTATATCA
TGGTCGCAGAGGCTCGACCTTGCGGCTTTGTCCCTCGTGGAGAGCGTGGA
ACTCAGGTACAATTGCTGGCTGATGTCACTGACACGACTCATATCACGCG
TTTCGCTTTCCCCTCACGAGTTTGTCTATCCGTTTTTTTTTTTTTGTTCT
CACTGCCTTCATTTTGTTTTGCCCGCTTTCTTTTCGCCCCCCAGGTAAGC
CTCGAGGAGGCGGCCGAAGGACTACCGGACGAGTTCGGAGTGCTTGAAGG
CCGGCTTCGAAGCGGGTTCAACGAGGCTTACTTCGATCAGCTTTGCGCCG
CCGAAAGTGCGTGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9148:203..5719-

>mRNA_M-pyrifera_M_contig9148.21201.1 ID=mRNA_M-pyrifera_M_contig9148.21201.1|Name=mRNA_M-pyrifera_M_contig9148.21201.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig9148:203..5719- (Macrocystis pyrifera P11B4 male)
ATGGGGAGGCTCAACAGCTTGATCAAGTTCGTCGTCGTGAACGCCAATGT
CTTGCTCTTCCTCGGAGGAGTTGGGATTATTGTCGTGGTCTCTCTCGTCC
TTACGGCGGATTTCGCCAAGCTTGCCGAGATGGGGAGGCTCAACAGCTTG
ATCAAGTTCGTCGTCGTGAACGCCAATGTCTTGCTCTTCCTCGGAGGAGT
TGGGATTATTGTCGTGGTCTCTCTCGTCCTTACGGCGGATTTCGCCAAGC
TTGCCGAGGAATACATCAGAGTTCGCGGAGTGGCGATGCTGGTCGTTGGC
GTGCTGGTGACCATCATGTCCATCATTGGCTGCATGGGCACCAACCGACA
GATACAGCGGGATCGAATACATCAGAGTTCGCGGAGTGGCGATGCTGGTC
GTTGGCGTGCTGGTGACCATCATGTCCATCATTGGCTGCATGGGCACCAA
CCGACAGATACAGCGGGATCGCACCTGGAGCGGACGCCGGATTCTAAGCC
TGTACCAGCTTATCCTCGTCGCAGTTGTGGTGTGCCAAGGGATCGCCCAG
ACAAGGCTCTACAGCATTGAGGCAAGATGGCACCTGGAGCGGACGCCGGA
TTCTAAGCCTGTACCAGCTTATCCTCGTCGCAGTTGTGGTGTGCCAAGGG
ATCGCCCAGACAAGGCTCTACAGCATTGAGGCAAGATGCCTCGAGGAGGC
GGCCGAAGGACTACCGGACGAGTTCGGAGTGCTTGAAGGCCGGCTTCGAA
GCGGGTTCAACGAGGCTTACTTCGATCAGCTTTGCGCCGCCGAAAGTGCG
TGGTAACCTCGAGGAGGCGGCCGAAGGACTACCGGACGAGTTCGGAGTGC
TTGAAGGCCGGCTTCGAAGCGGGTTCAACGAGGCTTACTTCGATCAGCTT
TGCGCCGCCGAAAGTGCGTGGTAA
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