mRNA_M-pyrifera_M_contig91464.21198.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91464.21198.1
Unique NamemRNA_M-pyrifera_M_contig91464.21198.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A518ABX2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABX2_9PLAN)

HSP 1 Score: 356 bits (913), Expect = 3.580e-124
Identity = 171/181 (94.48%), Postives = 179/181 (98.90%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGGVSFFFPISK 543
            M+ENIIPEN+EAT+WRFDDQGLLAGPYSYNEL+EY++LDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHST PPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYT+LTG+AHDSEGNPEHRPVANRIAGLIVILIG YLIGGGVSFFFPISK
Sbjct:    1 MTENIIPENREATKWRFDDQGLLAGPYSYNELVEYVELDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTVPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTLLTGTAHDSEGNPEHRPVANRIAGLIVILIGTYLIGGGVSFFFPISK 181          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A2E7KL56_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KL56_9PLAN)

HSP 1 Score: 313 bits (802), Expect = 3.000e-107
Identity = 152/181 (83.98%), Postives = 165/181 (91.16%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGGVSFFFPISK 543
            MSE  IPEN+E+TEWRFDDQGLLAGPYSYNEL+EY+ LDYIQPETEI+HEDGRKY AFEIGLFPGFVP IPEP  EHS  PPLPGWNILAGVAFLS I VK+L  IPALRFL SVKPYS+VIGGFAV+LIGCYTMLTG+AHDS+GNPEHRPVANRIAG+IVILIGI LIGGGVS+F P+SK
Sbjct:    1 MSEINIPENRESTEWRFDDQGLLAGPYSYNELVEYVGLDYIQPETEIVHEDGRKYLAFEIGLFPGFVPEIPEPAHEHSIVPPLPGWNILAGVAFLSMIIVKLLTFIPALRFLNSVKPYSVVIGGFAVLLIGCYTMLTGTAHDSDGNPEHRPVANRIAGVIVILIGICLIGGGVSYFLPVSK 181          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A517WK72_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WK72_9PLAN)

HSP 1 Score: 305 bits (780), Expect = 6.760e-104
Identity = 143/181 (79.01%), Postives = 158/181 (87.29%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGGVSFFFPISK 543
            MS+N+IPEN+ ATEWRFDDQGLLAGPYSYNELMEY++L YIQP+TEIIHEDGRKYQAFEIGLFPGFVP IPEP DEH+   PLPGWN LAGVA LSWITV  L LIP   + + +KPYSM+IGG AV+LIGCYTMLTG+AHDS GNPEHRPVANRIAGL  ILIG+YLIGGGVSFF P+ K
Sbjct:    1 MSDNMIPENRNATEWRFDDQGLLAGPYSYNELMEYVELGYIQPDTEIIHEDGRKYQAFEIGLFPGFVPVIPEPADEHNKVLPLPGWNFLAGVALLSWITVNALALIPGGHWFHGMKPYSMIIGGCAVLLIGCYTMLTGTAHDSGGNPEHRPVANRIAGLFAILIGVYLIGGGVSFFIPVGK 181          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A2E7KJF0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJF0_9PLAN)

HSP 1 Score: 265 bits (678), Expect = 2.260e-88
Identity = 125/172 (72.67%), Postives = 144/172 (83.72%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIG-IYLIGG 513
            M+E  +PEN+EATEWRFDDQGLLAGPYSYNEL +Y++LDYIQPETE+IHEDGRKYQA+EIGLFP FVP   +P DE ST PPLPGWN LAGVAFLSWITV  L L+P     Y ++PYSM+IGGFAVVLIGCYT+LTG+AHDS GNP H PV NRIAGL VI++G ++L  G
Sbjct:    1 MTEYPVPENREATEWRFDDQGLLAGPYSYNELWDYVELDYIQPETEVIHEDGRKYQAYEIGLFPDFVPEKTDPADERSTIPPLPGWNFLAGVAFLSWITVNALSLVPYGHRFYIIRPYSMIIGGFAVVLIGCYTLLTGTAHDSRGNPHHSPVENRIAGLFVIVLGAVFLFWG 172          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A517WWI1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWI1_9PLAN)

HSP 1 Score: 247 bits (631), Expect = 3.450e-81
Identity = 120/177 (67.80%), Postives = 148/177 (83.62%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTAP-PLPGWNILAGV-AFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGGVSF 525
            M+E  +PEN+EATEWR+DDQGLLAGPYSYNELMEY++LDYIQP T+IIHEDGR YQAFEIGLFPGFVP   +PV+E+  A  PLPGWN LAGV A L W+++ V   IPA  ++  +KPY+++IGGFAVVL+GC+ +LTG+AHD+ GNPEHRPVANRIAGLIVI IG+ ++ G V+F
Sbjct:    1 MTEYPVPENREATEWRYDDQGLLAGPYSYNELMEYVELDYIQPGTKIIHEDGRNYQAFEIGLFPGFVPEKTDPVEEYRNAVMPLPGWNFLAGVVAVLVWVSILVQRWIPADHWIRDMKPYAILIGGFAVVLMGCFALLTGTAHDTRGNPEHRPVANRIAGLIVIAIGVSILCGEVNF 177          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A6I6AJ05_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AJ05_9PLAN)

HSP 1 Score: 227 bits (578), Expect = 3.870e-73
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTA-PPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGG 516
            M+E  +PEN+EATEWRFDDQGLLAGPYSY ELMEY++LDYIQPETEIIHEDGRKYQAFE+GLFPGFVP  P+P +E+  A  PLPGWN LAGV   S ++ KV   +P   +   + P+SM+IGGFA+VLIGCYT LTG AH   G P++RPV NRI  +I I+ G  LI  G
Sbjct:    1 MTEYPVPENREATEWRFDDQGLLAGPYSYIELMEYVELDYIQPETEIIHEDGRKYQAFEVGLFPGFVPEKPDPAEEYRNAVTPLPGWNFLAGVVVFSLVSFKVQQKVPEGHWFNGIMPFSMIIGGFAMVLIGCYTGLTGIAHSFSGIPQYRPVFNRIGAVIAIVFGTILIFWG 173          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A518AEG5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEG5_9PLAN)

HSP 1 Score: 221 bits (564), Expect = 4.720e-71
Identity = 109/175 (62.29%), Postives = 132/175 (75.43%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDE-HSTAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGGVS 522
            M+E  +PEN+EAT WRFDDQGLLAGPYSYNELM+Y++LDYIQPETEIIHEDGRK+QAFEIGLFPGFVP    P DE  +   PLPGWN+LAGV  L+ + +KV    P   + Y V P+S+ IGGFA+VLIGCYT LTG AH+  G P++RPV  RI  +IVI +GI  +  G+ 
Sbjct:    1 MTEYPVPENREATVWRFDDQGLLAGPYSYNELMDYVELDYIQPETEIIHEDGRKFQAFEIGLFPGFVPEKNAPTDEKENPIAPLPGWNVLAGVVALTLVAMKVAQRFPEDHWFYGVLPFSLTIGGFAMVLIGCYTGLTGIAHNFRGIPKYRPVFYRIGAVIVIYLGILFMIAGIK 175          
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Match: A0A3C0ANT2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0ANT2_9PLAN)

HSP 1 Score: 214 bits (546), Expect = 3.130e-68
Identity = 106/173 (61.27%), Postives = 131/173 (75.72%), Query Frame = 1
Query:    1 MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEH-STAPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHRPVANRIAGLIVILIGIYLIGGG 516
            M+E  + EN++ATEWRFDDQGLLAGPYSYNELM+Y++L YIQPETEIIHE GRKYQAFEIGLFPGFVP   +P +E+ +T  PLPGWN L+ V  L +I++K+    P   +  +V P+SM+IGGFA+VLIGCYT LTG AH   G P++RPV NRI  +I I+ G  LI  G
Sbjct:    4 MTEYPVAENRKATEWRFDDQGLLAGPYSYNELMDYVELGYIQPETEIIHETGRKYQAFEIGLFPGFVPEKIDPAEEYRNTVIPLPGWNFLSAVVVLFFISIKIARRFPKDHWFVAVMPFSMIIGGFALVLIGCYTGLTGIAHSFSGIPQYRPVFNRIGAVIAIVFGTILIFWG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91464.21198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A518ABX2_9PLAN3.580e-12494.48Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A2E7KL56_9PLAN3.000e-10783.98Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A0A517WK72_9PLAN6.760e-10479.01Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2E7KJF0_9PLAN2.260e-8872.67Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WWI1_9PLAN3.450e-8167.80Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A6I6AJ05_9PLAN3.870e-7364.16Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A518AEG5_9PLAN4.720e-7162.29Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A3C0ANT2_9PLAN3.130e-6861.27Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91464contigM-pyrifera_M_contig91464:65..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size546
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.7326968-CDS-M-pyrifera_M_contig91464:64..6101622816827.7326968-CDS-M-pyrifera_M_contig91464:64..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91464 65..610 -
1692278202.1231685-CDS-M-pyrifera_M_contig91464:64..6101692278202.1231685-CDS-M-pyrifera_M_contig91464:64..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91464 65..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91464.21198.1prot_M-pyrifera_M_contig91464.21198.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91464 65..610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91464.21198.1

>prot_M-pyrifera_M_contig91464.21198.1 ID=prot_M-pyrifera_M_contig91464.21198.1|Name=mRNA_M-pyrifera_M_contig91464.21198.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MSENIIPENKEATEWRFDDQGLLAGPYSYNELMEYMKLDYIQPETEIIHE
DGRKYQAFEIGLFPGFVPAIPEPVDEHSTAPPLPGWNILAGVAFLSWITV
KVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTMLTGSAHDSEGNPEHR
PVANRIAGLIVILIGIYLIGGGVSFFFPISK*
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mRNA from alignment at M-pyrifera_M_contig91464:65..610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91464.21198.1 ID=mRNA_M-pyrifera_M_contig91464.21198.1|Name=mRNA_M-pyrifera_M_contig91464.21198.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig91464:65..610- (Macrocystis pyrifera P11B4 male)
ATGAGTGAAAATATTATCCCAGAAAACAAGGAAGCCACGGAGTGGCGGTT TGATGATCAGGGCCTGCTCGCAGGCCCCTACTCTTATAATGAACTCATGG AATACATGAAGCTGGACTACATCCAGCCTGAAACGGAGATCATTCATGAG GATGGCCGAAAATATCAGGCATTCGAGATCGGATTATTTCCCGGCTTTGT CCCTGCGATACCAGAACCTGTCGACGAGCATAGTACAGCCCCCCCTTTGC CTGGATGGAATATCCTGGCGGGAGTGGCATTCTTGTCATGGATTACAGTC AAGGTACTACCTTTGATACCAGCGCTCCGCTTCCTCTACAGTGTGAAGCC CTATTCGATGGTCATCGGCGGCTTCGCAGTAGTTTTAATTGGCTGTTACA CGATGCTAACCGGGTCAGCCCATGATTCCGAAGGAAACCCGGAGCACAGG CCAGTTGCCAACAGAATTGCAGGACTGATTGTAATTCTAATTGGTATTTA CCTGATCGGTGGCGGAGTCAGTTTCTTTTTCCCCATAAGTAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91464:65..610-

>mRNA_M-pyrifera_M_contig91464.21198.1 ID=mRNA_M-pyrifera_M_contig91464.21198.1|Name=mRNA_M-pyrifera_M_contig91464.21198.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig91464:65..610- (Macrocystis pyrifera P11B4 male)
ATGAGTGAAAATATTATCCCAGAAAACAAGGAAGCCACGGAGTGGCGGTT
TGATGATCAGGGCCTGCTCGCAGGCCCCTACTCTTATAATGAACTCATGG
AATACATGAAGCTGGACTACATCCAGCCTGAAACGGAGATCATTCATGAG
GATGGCCGAAAATATCAGGCATTCGAGATCGGATTATTTCCCGGCTTTGT
CCCTGCGATACCAGAACCTGTCGACGAGCATAGTACAGCCCCCCCTTTGC
CTGGATGGAATATCCTGGCGGGAGTGGCATTCTTGTCATGGATTACAGTC
AAGGTACTACCTTTGATACCAGCGCTCCGCTTCCTCTACAGTGTGAAGCC
CTATTCGATGGTCATCGGCGGCTTCGCAGTAGTTTTAATTGGCTGTTACA
CGATGCTAACCGGGTCAGCCCATGATTCCGAAGGAAACCCGGAGCACAGG
CCAGTTGCCAACAGAATTGCAGGACTGATTGTAATTCTAATTGGTATTTA
CCTGATCGGTGGCGGAGTCAGTTTCTTTTTCCCCATAAGTAAATAAATGA
GTGAAAATATTATCCCAGAAAACAAGGAAGCCACGGAGTGGCGGTTTGAT
GATCAGGGCCTGCTCGCAGGCCCCTACTCTTATAATGAACTCATGGAATA
CATGAAGCTGGACTACATCCAGCCTGAAACGGAGATCATTCATGAGGATG
GCCGAAAATATCAGGCATTCGAGATCGGATTATTTCCCGGCTTTGTCCCT
GCGATACCAGAACCTGTCGACGAGCATAGTACAGCCCCCCCTTTGCCTGG
ATGGAATATCCTGGCGGGAGTGGCATTCTTGTCATGGATTACAGTCAAGG
TACTACCTTTGATACCAGCGCTCCGCTTCCTCTACAGTGTGAAGCCCTAT
TCGATGGTCATCGGCGGCTTCGCAGTAGTTTTAATTGGCTGTTACACGAT
GCTAACCGGGTCAGCCCATGATTCCGAAGGAAACCCGGAGCACAGGCCAG
TTGCCAACAGAATTGCAGGACTGATTGTAATTCTAATTGGTATTTACCTG
ATCGGTGGCGGAGTCAGTTTCTTTTTCCCCATAAGTAAATAA
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