mRNA_M-pyrifera_M_contig91461.21197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91461.21197.1
Unique NamemRNA_M-pyrifera_M_contig91461.21197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A5A8CWK6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWK6_CAFRO)

HSP 1 Score: 81.6 bits (200), Expect = 8.230e-17
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIP 381
            V+LHFGVA+ +   RLE+ AYN+  FR PD+ G++P+  K++ + +LG A  + +D   +   +D      + +S DPGRFVCN LAF S +  ++ ++   ++P  L++F HIP
Sbjct:   12 VFLHFGVADGSSCARLERTAYNLAHFRVPDESGEAPKCEKVLPEFDLGHACKAELDCAAVVDRVDDPAR-RLTLSDDPGRFVCNFLAFSSMKRTAAWNAP-GTAPKRLAVFCHIP 124          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A5A8E195_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E195_CAFRO)

HSP 1 Score: 81.6 bits (200), Expect = 4.180e-16
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIP 381
            V+LHFGVA+ +   RLE+ AYN+  FR PD+ G++P+  K++ + +LG A  + +D   +   +D      + +S DPGRFVCN LAF S +  ++ ++   ++P  L++F HIP
Sbjct:   90 VFLHFGVADGSSCARLERTAYNLAHFRVPDESGEAPKCEKVLPEFDLGHACKAELDCAAVVDRVDDPAR-RLTLSDDPGRFVCNFLAFSSMKRTAAWNAP-GTAPKRLAVFCHIP 202          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A2R5G3L0_9STRA (Pyroglutamyl-peptidase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3L0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.110e-15
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   28 ARVVWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIPSSLLLPLPQRQSLLHSLLNHIAN 450
            A  +W+H GV  ++   RLE KAYN  DFR PD+ G+SP  +KI+ D     +    +D +         ++  V V+ DPGRFVCN++ +         SS     P +L  FVH+PS    P      ++ S+L+HIAN
Sbjct:   87 ADAIWVHLGVYSSSKTFRLEHKAYNEADFRVPDERGESPSHAKIIPDGAPNLSCGFDLDALCSDVRSSVGIKARVNVTDDPGRFVCNYVYY---------SSLARHGPHVL--FVHVPSLATAPPAVHLEVVESILDHIAN 216          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A7S1GQ60_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQ60_CYCTE)

HSP 1 Score: 73.9 bits (180), Expect = 2.690e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLS 306
            V LH GV       +LE+ AYN   FR PD+ G  PR   I D+++LG+A+++ +DV  L+K+++        VSTDPGRFVCN+  F S
Sbjct:   12 VLLHMGVDYKGKSFKLEKFAYNNATFRIPDERGYQPRNKCIDDEMKLGEALETCLDVEQLEKIMENN---DTSVSTDPGRFVCNYTYFYS 98          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A0L0DUL7_THETB (Pyrrolidone-carboxylate peptidase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DUL7_THETB)

HSP 1 Score: 75.5 bits (184), Expect = 8.950e-14
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   43 LHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVI-DGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIP 381
            LH GVA +A GVRLEQ+AYN   FR PDQDG    +  I + +     +++ + +  +  ++ D   +V +EVSTD GR++CN+L + S R A         S ++ SLFVHIP
Sbjct:   99 LHLGVAASATGVRLEQRAYNEASFRVPDQDGAQLSDEPIDEVMPTESWLETLLPLERIAALMSDAHPDVPIEVSTDAGRYLCNYLYYKSLRLAHG-------SSNLHSLFVHIP 205          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A6G0XN69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XN69_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.900e-10
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIP 381
            V++H GV+E AP + LE+  YN+ +F  PD+ G     + IV+  E       P++ +  Q +   E    V +STDPGR++CN++ +LS   +       S++ +  SLFVH+P
Sbjct:   65 VFVHLGVSEKAPHILLEKVGYNVANFSIPDERGWVANNATIVEKEEDSFETTLPIEKMEAQLL---EKSCNVSISTDPGRYICNYIYYLSLTHSKH-----SANKNQHSLFVHVP 171          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A2I0AGQ0_9ASPA (Pyroglutamyl-peptidase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AGQ0_9ASPA)

HSP 1 Score: 65.1 bits (157), Expect = 5.990e-10
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   25 SARVVWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIV-DDLELGQAVDSPVDVVGLQKVIDGEVEVGVEV--STDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIP 381
            SARV+WLHFGV   + G  LE++A N   FR PD+ G  P +  I+  D  + +  ++ + V  + + +    E+G EV  S D GRFVCN++ + S R A            I SLFVH P
Sbjct:   84 SARVIWLHFGVNSGSMGFALEKQAVNEATFRWPDELGWKPHKFPIIPSDGSISRMRETSLPVDDMAEALS---EMGYEVIPSDDAGRFVCNYVYYHSLRFAEQ--------NGIRSLFVHFP 194          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: F0WYB8_9STRA (Uncharacterized protein AlNc14C376G11177 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYB8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.230e-10
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIPS 384
            +++HFG+   A  + LE+ AYN+ DFR PD+ G+  ++S I+ D +       P++V+     ++        +STDPGRF+CN + F S          L   P   +LFVHIPS
Sbjct:   64 IFIHFGLHAEAKTIHLEKYAYNLADFRIPDERGQLIKQSLILSDCKSKYETKIPLEVI-----LEDLQGFDFTLSTDPGRFICNLVYFHSLHWLEQNEKQL---PDAHALFVHIPS 171          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: A0A3M6VGB9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGB9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.170e-9
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   37 VWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIVDDLELGQAVDSPVD--VVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIPSSLLLPLPQRQSLLHSLLNHIAN 450
            ++LHFGV+  A  V+LEQ  YN+ DFR PD+ G   ++  I +        + P++  ++ LQ +      +GV +STDPGR++CN++ + S   A   ++   S   +L  FVH+P    L    + +L  ++++ +A+
Sbjct:   88 IFLHFGVSAVACSVKLEQVGYNVADFRIPDERGYVAKDEVIHEGEPDNMTTEVPLEEMLMTLQAM-----HLGVSISTDPGRYICNYVYYRSLVWAKGQATKGHSRHLVL--FVHVPEFRTLGFEDQMALASTIVDMVAD 220          
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Match: UPI000B8D0824 (uncharacterized protein LOC110815320 isoform X3 n=5 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0824)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-9
Identity = 50/144 (34.72%), Postives = 72/144 (50.00%), Query Frame = 1
Query:   13 EKDESARVVWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRESKIV-DDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVST--DPGRFVCNHLAFLSYRAASSLSSTLSSSPSILSLFVHIPSSLLLPLPQRQSLLHSLL 435
            E   SAR VW+HFGV   A    +E++A N   FRCPD+ G  P++  I   D  + +  ++ + V  + K +    + G EV T  D GRFVCN++ + S R A    +         SLFVH+P  L +    +  L  SLL
Sbjct:   80 EPSNSARTVWVHFGVNSGATRFAIEKQAVNEATFRCPDEMGWKPQKVPIFPSDGGISRVRETSLPVEEITKAL---AKKGFEVMTSNDAGRFVCNYVYYHSLRFAEQNGTK--------SLFVHVPLFLTIDEETQMQLASSLL 212          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91461.21197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CWK6_CAFRO8.230e-1738.26Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8E195_CAFRO4.180e-1638.26Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2R5G3L0_9STRA6.110e-1535.46Pyroglutamyl-peptidase 1 n=1 Tax=Hondaea fermental... [more]
A0A7S1GQ60_CYCTE2.690e-1443.33Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A0L0DUL7_THETB8.950e-1440.35Pyrrolidone-carboxylate peptidase n=1 Tax=Thecamon... [more]
A0A6G0XN69_9STRA5.900e-1033.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2I0AGQ0_9ASPA5.990e-1037.70Pyroglutamyl-peptidase n=1 Tax=Apostasia shenzheni... [more]
F0WYB8_9STRA8.230e-1034.48Uncharacterized protein AlNc14C376G11177 n=1 Tax=A... [more]
A0A3M6VGB9_9STRA1.170e-930.71Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
UPI000B8D08241.320e-934.72uncharacterized protein LOC110815320 isoform X3 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91461contigM-pyrifera_M_contig91461:279..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog529818.AMSG_02041T0
Preferred namePGPEP1
KEGG rclassRC00049
KEGG koko:K01213,ko:K01304,ko:K03574,ko:K13625,ko:K18763
KEGG ReactionR01982,R07413
KEGG Pathwayko00040,ko01100,ko04216,ko04217,ko04978,map00040,map01100,map04216,map04217,map04978
KEGG ModuleM00081
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.pyroglutamyl-peptidase activity
EggNOG OGsCOG2039@1,KOG4755@2759
EC3.2.1.67,3.4.19.3,3.6.1.55
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko03400,ko04147
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.6971602-CDS-M-pyrifera_M_contig91461:278..7281622816827.6971602-CDS-M-pyrifera_M_contig91461:278..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91461 279..728 -
1692278202.1069214-CDS-M-pyrifera_M_contig91461:278..7281692278202.1069214-CDS-M-pyrifera_M_contig91461:278..728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91461 279..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91461.21197.1prot_M-pyrifera_M_contig91461.21197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91461 279..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91461.21197.1

>prot_M-pyrifera_M_contig91461.21197.1 ID=prot_M-pyrifera_M_contig91461.21197.1|Name=mRNA_M-pyrifera_M_contig91461.21197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MGILEKDESARVVWLHFGVAETAPGVRLEQKAYNMDDFRCPDQDGKSPRE
SKIVDDLELGQAVDSPVDVVGLQKVIDGEVEVGVEVSTDPGRFVCNHLAF
LSYRAASSLSSTLSSSPSILSLFVHIPSSLLLPLPQRQSLLHSLLNHIAN
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mRNA from alignment at M-pyrifera_M_contig91461:279..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91461.21197.1 ID=mRNA_M-pyrifera_M_contig91461.21197.1|Name=mRNA_M-pyrifera_M_contig91461.21197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig91461:279..728- (Macrocystis pyrifera P11B4 male)
ATGGGGATTTTGGAGAAGGATGAGAGTGCTCGGGTGGTGTGGTTGCATTT TGGAGTGGCTGAGACGGCACCTGGTGTGCGATTGGAGCAAAAAGCATACA ACATGGACGATTTCCGTTGTCCTGACCAAGATGGCAAATCTCCTCGTGAA TCAAAGATTGTGGACGATCTGGAGCTTGGACAAGCCGTGGATAGTCCTGT GGATGTCGTTGGATTACAAAAAGTGATTGATGGTGAAGTGGAGGTTGGTG TGGAAGTGTCAACAGATCCTGGTCGATTCGTCTGCAATCACTTGGCCTTT CTCAGCTATCGTGCTGCATCTTCTCTCTCTTCGACGCTTTCTTCGTCCCC CTCAATCCTCTCTCTGTTCGTCCACATTCCCTCCTCGCTCCTCCTCCCTC TCCCACAGCGTCAATCCTTGCTCCATTCCCTCCTCAACCACATTGCCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91461:279..728-

>mRNA_M-pyrifera_M_contig91461.21197.1 ID=mRNA_M-pyrifera_M_contig91461.21197.1|Name=mRNA_M-pyrifera_M_contig91461.21197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig91461:279..728- (Macrocystis pyrifera P11B4 male)
ATGGGGATTTTGGAGAAGGATGAGAGTGCTCGGGTGGTGTGGTTGCATTT
TGGAGTGGCTGAGACGGCACCTGGTGTGCGATTGGAGCAAAAAGCATACA
ACATGGACGATTTCCGTTGTCCTGACCAAGATGGCAAATCTCCTCGTGAA
TCAAAGATTGTGGACGATCTGGAGCTTGGACAAGCCGTGGATAGTCCTGT
GGATGTCGTTGGATTACAAAAAGTGATTGATGGTGAAGTGGAGGTTGGTG
TGGAAGTGTCAACAGATCCTGGTCGATTCGTCTGCAATCACTTGGCCTTT
CTCAGCTATCGTGCTGCATCTTCTCTCTCTTCGACGCTTTCTTCGTCCCC
CTCAATCCTCTCTCTGTTCGTCCACATTCCCTCCTCGCTCCTCCTCCCTC
TCCCACAGCGTCAATCCTTGCTCCATTCCCTCCTCAACCACATTGCCAAC
ATGGGGATTTTGGAGAAGGATGAGAGTGCTCGGGTGGTGTGGTTGCATTT
TGGAGTGGCTGAGACGGCACCTGGTGTGCGATTGGAGCAAAAAGCATACA
ACATGGACGATTTCCGTTGTCCTGACCAAGATGGCAAATCTCCTCGTGAA
TCAAAGATTGTGGACGATCTGGAGCTTGGACAAGCCGTGGATAGTCCTGT
GGATGTCGTTGGATTACAAAAAGTGATTGATGGTGAAGTGGAGGTTGGTG
TGGAAGTGTCAACAGATCCTGGTCGATTCGTCTGCAATCACTTGGCCTTT
CTCAGCTATCGTGCTGCATCTTCTCTCTCTTCGACGCTTTCTTCGTCCCC
CTCAATCCTCTCTCTGTTCGTCCACATTCCCTCCTCGCTCCTCCTCCCTC
TCCCACAGCGTCAATCCTTGCTCCATTCCCTCCTCAACCACATTGCCAAC
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