mRNA_M-pyrifera_M_contig91436.21191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91436.21191.1
Unique NamemRNA_M-pyrifera_M_contig91436.21191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91436.21191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91436contigM-pyrifera_M_contig91436:93..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.408346-CDS-M-pyrifera_M_contig91436:92..5181622816827.408346-CDS-M-pyrifera_M_contig91436:92..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91436 93..518 -
1692278201.93594-CDS-M-pyrifera_M_contig91436:92..5181692278201.93594-CDS-M-pyrifera_M_contig91436:92..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91436 93..518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.4188194-UTR-M-pyrifera_M_contig91436:518..5301622816827.4188194-UTR-M-pyrifera_M_contig91436:518..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91436 519..530 -
1692278201.9467938-UTR-M-pyrifera_M_contig91436:518..5301692278201.9467938-UTR-M-pyrifera_M_contig91436:518..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig91436 519..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91436.21191.1prot_M-pyrifera_M_contig91436.21191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91436 93..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91436.21191.1

>prot_M-pyrifera_M_contig91436.21191.1 ID=prot_M-pyrifera_M_contig91436.21191.1|Name=mRNA_M-pyrifera_M_contig91436.21191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MFNSIALRGVVKPGVVVEWGERLCLGRFQALPFGVSTAPFVASWVSAVAA
GCVTGGTEPYVDDSLGYGETEEQAWSQLASYLEVHAAAGFRVRPAKITPP
AKEVTFLGVKVHQSDKGLSLAVPRSKARRMKEEVEELLEEME
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mRNA from alignment at M-pyrifera_M_contig91436:93..530-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91436.21191.1 ID=mRNA_M-pyrifera_M_contig91436.21191.1|Name=mRNA_M-pyrifera_M_contig91436.21191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig91436:93..530- (Macrocystis pyrifera P11B4 male)
GATCTGGCCCACATGTTTAACTCGATCGCGTTGAGGGGCGTAGTGAAGCC
GGGAGTAGTGGTGGAGTGGGGGGAGAGACTGTGTTTGGGCAGATTCCAAG
CGTTGCCCTTTGGGGTCTCCACAGCACCATTCGTGGCATCTTGGGTGTCG
GCAGTAGCGGCAGGATGCGTCACGGGAGGCACAGAACCATATGTGGACGA
TTCGCTGGGGTACGGGGAGACGGAAGAGCAGGCTTGGAGCCAGTTGGCAA
GCTACTTGGAGGTGCACGCGGCGGCCGGATTCAGGGTGAGACCGGCAAAG
ATCACCCCACCAGCCAAAGAGGTGACATTTTTGGGAGTGAAGGTGCATCA
GAGTGACAAGGGGCTGTCATTGGCAGTCCCAAGGAGCAAGGCGAGGAGAA
TGAAGGAGGAGGTGGAGGAGTTGTTGGAGGAGATGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91436:93..530-

>mRNA_M-pyrifera_M_contig91436.21191.1 ID=mRNA_M-pyrifera_M_contig91436.21191.1|Name=mRNA_M-pyrifera_M_contig91436.21191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig91436:93..530- (Macrocystis pyrifera P11B4 male)
ATGTTTAACTCGATCGCGTTGAGGGGCGTAGTGAAGCCGGGAGTAGTGGT
GGAGTGGGGGGAGAGACTGTGTTTGGGCAGATTCCAAGCGTTGCCCTTTG
GGGTCTCCACAGCACCATTCGTGGCATCTTGGGTGTCGGCAGTAGCGGCA
GGATGCGTCACGGGAGGCACAGAACCATATGTGGACGATTCGCTGGGGTA
CGGGGAGACGGAAGAGCAGGCTTGGAGCCAGTTGGCAAGCTACTTGGAGG
TGCACGCGGCGGCCGGATTCAGGGTGAGACCGGCAAAGATCACCCCACCA
GCCAAAGAGGTGACATTTTTGGGAGTGAAGGTGCATCAGAGTGACAAGGG
GCTGTCATTGGCAGTCCCAAGGAGCAAGGCGAGGAGAATGAAGGAGGAGG
TGGAGGAGTTGTTGGAGGAGATGGAGATGTTTAACTCGATCGCGTTGAGG
GGCGTAGTGAAGCCGGGAGTAGTGGTGGAGTGGGGGGAGAGACTGTGTTT
GGGCAGATTCCAAGCGTTGCCCTTTGGGGTCTCCACAGCACCATTCGTGG
CATCTTGGGTGTCGGCAGTAGCGGCAGGATGCGTCACGGGAGGCACAGAA
CCATATGTGGACGATTCGCTGGGGTACGGGGAGACGGAAGAGCAGGCTTG
GAGCCAGTTGGCAAGCTACTTGGAGGTGCACGCGGCGGCCGGATTCAGGG
TGAGACCGGCAAAGATCACCCCACCAGCCAAAGAGGTGACATTTTTGGGA
GTGAAGGTGCATCAGAGTGACAAGGGGCTGTCATTGGCAGTCCCAAGGAG
CAAGGCGAGGAGAATGAAGGAGGAGGTGGAGGAGTTGTTGGAGGAGATGG
AG
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