mRNA_M-pyrifera_M_contig9140.21184.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9140.21184.1
Unique NamemRNA_M-pyrifera_M_contig9140.21184.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: D8LIN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 5.970e-60
Identity = 96/127 (75.59%), Postives = 110/127 (86.61%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSAEG 381
            V +G TFV ELD +LGIADE ++ KT KQ+QEWDANVHGAIQ RID+ L +M  KDINERRR DLDKFLTTTNTK++VFRDIIIESEYDPLEPNRRA+KA+V  L +PCSRVLDKRAEENG+L+ EG
Sbjct:   54 VEAGRTFVKELDRILGIADEAQQGKTLKQYQEWDANVHGAIQGRIDKVLDKMSSKDINERRRGDLDKFLTTTNTKAAVFRDIIIESEYDPLEPNRRAVKAKVGHLRDPCSRVLDKRAEENGLLADEG 180          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A6H5K3N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N3_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 4.950e-59
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSAEG 381
            + +G TFV ELD +LGIADE +R KT KQ+QEWDANVHGAIQ RID+ L +M  KDINERRR DLDKFLTTTNTK++VFRDIIIESEYDPLEPNRRA+KA+V  L +PCSRVLDKRA+ENG+L+ EG
Sbjct:  130 IEAGRTFVKELDRILGIADEAQRGKTLKQYQEWDANVHGAIQGRIDKVLDKMSSKDINERRRGDLDKFLTTTNTKAAVFRDIIIESEYDPLEPNRRAVKAKVGHLRDPCSRVLDKRAQENGLLADEG 256          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A7S2FRU1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRU1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.370e-32
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSA 375
            +  G    +E+   L + D  E+NK  +QF++W+ NV+G +Q RI + L +    DIN +RR++  KFL TTN+K ++FRDIIIESEYDPLEPNR  IK     + +PCSRV+DK  EE+G+L +
Sbjct:  127 LVEGRRLASEIKTSLDLQDAAEQNKVRRQFEDWNQNVYGKLQNRISERLDRTTSHDINVKRRQEFQKFLDTTNSKGAIFRDIIIESEYDPLEPNRNCIKVDSSDVRDPCSRVVDKNLEESGMLDS 251          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A482S2M0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2M0_9ARCH)

HSP 1 Score: 123 bits (308), Expect = 2.010e-31
Identity = 58/120 (48.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   19 FVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSAE 378
            F+  ++  + +ADE +RNK  +QF++W+ NVHG IQ++I   +  MD K +N ++ +D DKFL  TN K+++FRDIIIESEYDPLEPNR  +KA+  +LH+P    L K  +E G+L AE
Sbjct:  111 FLGTVEKEMELADEAKRNKVRRQFEDWNTNVHGVIQKKIASQIDSMDKKALNWKKNQDYDKFLGITNRKAAIFRDIIIESEYDPLEPNRHCVKAKTSKLHDPPKFGLHKAEKEKGMLGAE 230          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: F0YG16_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG16_AURAN)

HSP 1 Score: 122 bits (305), Expect = 1.160e-29
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSAEG 381
            +  GH   +E+   L + +   R K  +QF EW+  V+GAIQ +I+  L  MD  +IN RRR +  KFL TTN K ++FRDIIIESEYDPLEPNR  IK +   + +P  RVLDK  EE  +L  +G
Sbjct:  419 IVEGHKLADEIQQHLSLQEMNARTKLKRQFDEWNDGVYGAIQDQINDRLDGMDSSEINRRRRHEFQKFLDTTNAKGAIFRDIIIESEYDPLEPNRNCIKVKTEGIRDPVKRVLDKHHEETSMLDDDG 545          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A8J2SEP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEP3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.980e-28
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILSA 375
            +  GH   +E+   L + D  ++ K  +QF EW++ V+G IQ +I++ L       IN RRR +  KFL  TN K ++FRDIIIESEYDPLEPNR  IK   + L +P  RVLD++ EE G+L A
Sbjct:  229 IVEGHKLADEVQKHLQLEDMNKQTKLKRQFDEWNSEVYGKIQDQINERLDSTTAAQINARRRREYQKFLDATNAKGAIFRDIIIESEYDPLEPNRHCIKVDTYGLRDPMKRVLDRQYEEQGMLDA 353          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A835YXY0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.900e-27
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDK 345
            V +GH  V+ELD  + I D  E NK  KQ  EW  NV+GAIQ +I Q +  MD K +++++++D   FL   N K ++FRDI++ESEYDP E NRRAIKA+V +L +P SR  D+
Sbjct:   93 VMAGHDLVDELDRAMDIVDSAEYNKRLKQHSEWTQNVYGAIQAQIRQQIDAMDPKALSKQKQDDYQLFLDEANRKPAIFRDIVVESEYDPFEVNRRAIKARVPKLVDPTSRPTDR 207          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A7S3XKK9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKK9_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 5.240e-21
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKS-SVFRDIIIESEYDPLEPNRRAIKAQVHR-LHNPCSRVLDKRAEENGILSAEG 381
            V  G     E D  + + D   R KT KQF EW+  V+G +Q +I + L + D K++  +R +    +L T+N K  +VFRDIIIESEYDPL PNR AI+ +  R L +P  RV D+  EE  +L AEG
Sbjct:   72 VKMGKELTEEADRAIALYDTARRLKTEKQFDEWNTGVYGHLQEKICEDLDRRDYKELQRQRNQAFQDYLDTSNKKGGAVFRDIIIESEYDPLAPNRGAIRVRGGRALRDPTRRVNDRHHEEQSLL-AEG 199          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A6G0XK92_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK92_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.230e-18
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGI 366
            +  G     EL   L + +ET + +  + + EW   V+  + R I++ +  MD K +N+ ++E    FL T N K  +FRDIIIESEYDPL  N+ A+K +  R+ +PCSRVL  R EE+ I
Sbjct:   43 IEEGKVLAEELGERLTLKEETAKRQKQRLYDEWTEKVYNKLNRPINEKIKSMDPKALNQHKQEAYQHFLDTVNKKGCLFRDIIIESEYDPLNDNK-AVKYRT-RVDDPCSRVLKTRDEEDAI 162          
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Match: A0A485LK25_9STRA (Aste57867_20610 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK25_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.130e-16
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALAQMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKAQVHRLHNPCSRVLDKRAEENGILS 372
            +  G     EL+  L + +ET + +  + + EW+  V+  +   I++ +  MD K +N+ ++E    FL T N K  +FRDIIIESEYDPL  N+ AI+ +  R+ +PC RV+  R EE  I +
Sbjct:   76 IEEGKALAQELEERLTLKEETAKRQKQRLYDEWNEKVYEKLNGPINERVKAMDAKALNQHKQEAYQHFLDTANKKGCLFRDIIIESEYDPLNDNK-AIRYRT-RVDDPCCRVIKHREEEEAIAN 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9140.21184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIN6_ECTSI5.970e-6075.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3N3_9PHAE4.950e-5974.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FRU1_9STRA4.370e-3247.20Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482S2M0_9ARCH2.010e-3148.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0YG16_AURAN1.160e-2947.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SEP3_9STRA4.980e-2845.60Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A835YXY0_9STRA8.900e-2748.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XKK9_HETAK5.240e-2143.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XK92_9STRA4.230e-1839.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LK25_9STRA2.130e-1636.29Aste57867_20610 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9140contigM-pyrifera_M_contig9140:9295..10731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue1e-47
Seed eggNOG ortholog2880.D8LIN6
Hectar predicted targeting categoryother localisation
EggNOG OGs29M9N@1,2RUJB@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004560.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9140.21184.1prot_M-pyrifera_M_contig9140.21184.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9140 9295..10731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.1390927-CDS-M-pyrifera_M_contig9140:9294..94161622816827.1390927-CDS-M-pyrifera_M_contig9140:9294..9416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 9295..9416 -
1692278201.7965624-CDS-M-pyrifera_M_contig9140:9294..94161692278201.7965624-CDS-M-pyrifera_M_contig9140:9294..9416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 9295..9416 -
1622816827.151536-CDS-M-pyrifera_M_contig9140:10185..103181622816827.151536-CDS-M-pyrifera_M_contig9140:10185..10318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 10186..10318 -
1692278201.8099654-CDS-M-pyrifera_M_contig9140:10185..103181692278201.8099654-CDS-M-pyrifera_M_contig9140:10185..10318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 10186..10318 -
1622816827.1632943-CDS-M-pyrifera_M_contig9140:10605..107311622816827.1632943-CDS-M-pyrifera_M_contig9140:10605..10731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 10606..10731 -
1692278201.821113-CDS-M-pyrifera_M_contig9140:10605..107311692278201.821113-CDS-M-pyrifera_M_contig9140:10605..10731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9140 10606..10731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9140.21184.1

>prot_M-pyrifera_M_contig9140.21184.1 ID=prot_M-pyrifera_M_contig9140.21184.1|Name=mRNA_M-pyrifera_M_contig9140.21184.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
VASGHTFVNELDHVLGIADETERNKTFKQFQEWDANVHGAIQRRIDQALA
QMDVKDINERRREDLDKFLTTTNTKSSVFRDIIIESEYDPLEPNRRAIKA
QVHRLHNPCSRVLDKRAEENGILSAEG
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mRNA from alignment at M-pyrifera_M_contig9140:9295..10731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9140.21184.1 ID=mRNA_M-pyrifera_M_contig9140.21184.1|Name=mRNA_M-pyrifera_M_contig9140.21184.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at M-pyrifera_M_contig9140:9295..10731- (Macrocystis pyrifera P11B4 male)
GTGGCGTCAGGCCACACATTTGTTAACGAGTTGGACCACGTCCTCGGTAT TGCCGACGAAACGGAGAGGAACAAGACCTTCAAGCAGTTCCAGGAGTGGG ACGCTAACGTCCACGGGGCCATCCAGGTACTGTTGCGAGAAACGTATTAA CCCTCGCCCTATTCAGCCGTAGGCAAGGCTATCGTAGTATTATGGTGAGC TTTCGATGATACTGAACTTGGTGATTGACAGGTGTGGCAAAGGTCTTTTG GGTGTTTGGGCCAGGCTGGCGATATTCTGCTGTCACGGGGTTCTCTCTGG ATTTTGTGTTTCAGCAGATGATTGACACGGTTGACCCCCGCCTCATTTGC TGGCAATGCCCCCGAGCTGAGAGTGCGTATGTGCATTACCCGGTGTGATC CGTACGTATTCAGAGACGAATCGACCAAGCCCTGGCTCAAATGGATGTGA AAGACATCAACGAACGCAGGCGCGAAGATCTGGACAAGTTCCTGACCACT ACCAACACCAAGTCTTCCGTTTTCCGCGATATTATCATCGAGTCAGGTAC ATAGCACCGACGTGGATCCTTGGCGGGAGGCTTGATTGGTGTAGCTACCA TCATCTGCAATCAACTCGCTATATATGCACGTTAGGTTACTGCAAGGCAG TCGGTTGAATCAAGTGCCTCCCACTCTCTTGTATTCTGAGTAGTGGAAAA ATCAGAGTAACTGCAAGCAGCGCAAGTAACTACAATGACCATCGGAGTGT TGCTCTTATTAATAGTAGCATGCTCGGTAGCGTCGATACTAAGTCGCATT CACTGGCACAACATCGTATCATGCGCAAAAGTACTCTTCCTGCAGAAGAT ATCGTGCAGGCTTGGTTCCACCACTTCCACACTGTTCTATACTTTGCAAG GACGCGTTGCTTACATCGATAAGTCATTGCTGCGTCGTGTAGACCGCTAC CGGTATGAAATGATAAAGCATTTTTGCGCGATCACGAGACCAATACACGA AACTTTGAAAGAAATTTGCCTCAGATAGAGAAGATACATCGTCGTGAGAA TTACACGGGCTACAGCTCCGTCTCGGTTTAGCTCAAGTTCTCAGTCTTGT AACAAAATGCCTGCAAAGTTTTTTAGGGTTGTGTCGGATCGTCTTGAAAG CTTTGTAACCGTATGACGTTCTCGGTATTTTGCAAGATTCGAAAATTCAA CCACTGCTGTCGCACGTTTCCGACTATTGGTGGGACAACATCTTGCTATG CTAAACTCGATACCATTTTATCATATTGTTTATCTGCATGGGGGGGCGAC TCGGAACTTGCCAAGAATACGACCCTTTGGAGCCGAACCGCCGTGCGATC AAGGCTCAAGTCCATCGCCTGCACAACCCCTGCAGTCGGGTTCTCGACAA ACGCGCCGAGGAGAACGGGATTTTATCAGCCGAGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9140:9295..10731-

>mRNA_M-pyrifera_M_contig9140.21184.1 ID=mRNA_M-pyrifera_M_contig9140.21184.1|Name=mRNA_M-pyrifera_M_contig9140.21184.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig9140:9295..10731- (Macrocystis pyrifera P11B4 male)
GTGGCGTCAGGCCACACATTTGTTAACGAGTTGGACCACGTCCTCGGTAT
TGCCGACGAAACGGAGAGGAACAAGACCTTCAAGCAGTTCCAGGAGTGGG
ACGCTAACGTCCACGGGGCCATCCAGGTGGCGTCAGGCCACACATTTGTT
AACGAGTTGGACCACGTCCTCGGTATTGCCGACGAAACGGAGAGGAACAA
GACCTTCAAGCAGTTCCAGGAGTGGGACGCTAACGTCCACGGGGCCATCC
AGAGACGAATCGACCAAGCCCTGGCTCAAATGGATGTGAAAGACATCAAC
GAACGCAGGCGCGAAGATCTGGACAAGTTCCTGACCACTACCAACACCAA
GTCTTCCGTTTTCCGCGATATTATCATCGAGTCAGAGACGAATCGACCAA
GCCCTGGCTCAAATGGATGTGAAAGACATCAACGAACGCAGGCGCGAAGA
TCTGGACAAGTTCCTGACCACTACCAACACCAAGTCTTCCGTTTTCCGCG
ATATTATCATCGAGTCAGAATACGACCCTTTGGAGCCGAACCGCCGTGCG
ATCAAGGCTCAAGTCCATCGCCTGCACAACCCCTGCAGTCGGGTTCTCGA
CAAACGCGCCGAGGAGAACGGGATTTTATCAGCCGAGGGTAATACGACCC
TTTGGAGCCGAACCGCCGTGCGATCAAGGCTCAAGTCCATCGCCTGCACA
ACCCCTGCAGTCGGGTTCTCGACAAACGCGCCGAGGAGAACGGGATTTTA
TCAGCCGAGGGT
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