mRNA_M-pyrifera_M_contig914.21182.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig914.21182.1
Unique NamemRNA_M-pyrifera_M_contig914.21182.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: D7FK43_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK43_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.310e-27
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESPNLSFPRFGK 210
            ++VAQTVM+NV YGM SSQIDNMGHLGGFLGGA +TF IGPR +RRLNP+T +PYI+DES  L +PR G+
Sbjct:  195 RNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAMTFLIGPRFKRRLNPYTGQPYIVDESFKLGWPRLGE 264
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: A0A6H5JA75_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA75_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.400e-24
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESPNLSFPRFGK 210
            ++VAQTVM+NV YGM SSQIDNMGHLGGFLGGA +TF IGPR   RLNP+T +PYI+DES  L +PR GK
Sbjct:  357 RNVAQTVMINVVYGMGSSQIDNMGHLGGFLGGAAITFLIGPR---RLNPYTGQPYIVDESFKLGWPRLGK 423
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: E1Z519_CHLVA (Rhomboid domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z519_CHLVA)

HSP 1 Score: 60.1 bits (144), Expect = 4.160e-8
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   13 QTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESP 183
            QT++LNV YG+SS++IDN GH+GG +GGAL    +GPR +    P     +++D +P
Sbjct:  177 QTLVLNVVYGLSSTRIDNWGHMGGLVGGALAGLLLGPRFQATTLPGKRGKWLVDVAP 233
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: UPI00053FEE02 (RHOMBOID-like protein 10, chloroplastic n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEE02)

HSP 1 Score: 57.4 bits (137), Expect = 5.780e-7
Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    7 VAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESPNLSFPRFGKR 213
            +AQ ++LN+  G+SSS IDN GHLGGFLGG  V+  +GP               +D++P   F R   R
Sbjct:  261 IAQVILLNIIIGLSSSGIDNWGHLGGFLGGVAVSLLVGPAWTYDSTTRDGRQVFVDKAPIFFFNRNRSR 329
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: A0A1D1XHT4_9ARAE (Rhomboid protease gluP (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XHT4_9ARAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.920e-6
Identity = 25/61 (40.98%), Postives = 33/61 (54.10%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESP 183
            Q +A  + LN+  G+ S   DN GHLGG LGGA V++F+GP      N     P   D +P
Sbjct:  295 QQIAHVIFLNMVIGLLSRNTDNWGHLGGLLGGAAVSWFVGPAWSYEYNTHYGRPVFADRAP 355
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: A0A0A7E6U2_9LILI (Rhomboid protein Panut_RBL10 (Fragment) n=1 Tax=Pandanus utilis TaxID=101712 RepID=A0A0A7E6U2_9LILI)

HSP 1 Score: 54.3 bits (129), Expect = 4.130e-6
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESPNLSF 195
            Q +A+ + LN+  G+    IDN GHLGGF+GGA V++F+GP  R   +        +D++P   F
Sbjct:  147 QHIARVIALNMVIGLLCRGIDNWGHLGGFVGGAAVSWFLGPAWRCEYHTDDGRSVYVDKAPIFHF 211
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: A0A5J5SR14_GOSBA (Rhomboid domain-containing protein n=5 Tax=Gossypium TaxID=3633 RepID=A0A5J5SR14_GOSBA)

HSP 1 Score: 53.9 bits (128), Expect = 5.760e-6
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESPNL 189
            Q +AQ + LN+  G+ SS IDN GHLGG LGGA V++ +GP  +   +  ++ P I  + P L
Sbjct:  147 QHIAQVIFLNMVIGLMSSGIDNWGHLGGLLGGAAVSWLVGPAWKYE-SMASDGPRIFSDRPQL 208
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: A0A7J6X982_THATH (Rhomboid-like protein 10 protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6X982_THATH)

HSP 1 Score: 51.6 bits (122), Expect = 6.220e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGP 123
            Q +A+ + LN+A G+ S  IDN GHLGG LGGA +++F+GP
Sbjct:   25 QQIARVIALNMAIGLLSKGIDNWGHLGGLLGGAAISWFLGP 65
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BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: G7IR52_MEDTR (Putative rhomboid protease n=4 Tax=Trifolieae TaxID=163742 RepID=G7IR52_MEDTR)

HSP 1 Score: 54.3 bits (129), Expect = 6.920e-6
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYIIDESP 183
            Q +AQ + LN+A G+SS+ IDN GHLGG +GG   ++ IGP  +            ID +P
Sbjct:  252 QHIAQVIALNLAIGLSSTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRRLFIDSAP 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Match: K8YP61_NANGC (Rhomboid domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YP61_NANGC)

HSP 1 Score: 53.9 bits (128), Expect = 7.190e-6
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:    1 QSVAQTVMLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRL------RRRLNPFTNEPYIIDESPNLSFP---RFGKRSG-GSPEEK 237
            +SVAQ V++N   GMSS++IDN GHLGG +GGA+  +  GPRL            + N P +      L      R G+RSG G+P  K
Sbjct:  152 RSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGK 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig914.21182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK43_ECTSI5.310e-2771.43Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA75_9PHAE8.400e-2471.43Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
E1Z519_CHLVA4.160e-845.61Rhomboid domain-containing protein n=1 Tax=Chlorel... [more]
UPI00053FEE025.780e-740.58RHOMBOID-like protein 10, chloroplastic n=1 Tax=Be... [more]
A0A1D1XHT4_9ARAE3.920e-640.98Rhomboid protease gluP (Fragment) n=2 Tax=Anthuriu... [more]
A0A0A7E6U2_9LILI4.130e-638.46Rhomboid protein Panut_RBL10 (Fragment) n=1 Tax=Pa... [more]
A0A5J5SR14_GOSBA5.760e-642.86Rhomboid domain-containing protein n=5 Tax=Gossypi... [more]
A0A7J6X982_THATH6.220e-653.66Rhomboid-like protein 10 protein n=1 Tax=Thalictru... [more]
G7IR52_MEDTR6.920e-640.98Putative rhomboid protease n=4 Tax=Trifolieae TaxI... [more]
K8YP61_NANGC7.190e-640.45Rhomboid domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig914contigM-pyrifera_M_contig914:9477..10811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue9.2e-20
Seed eggNOG ortholog2880.D7FK43
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size417
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig914.21182.1prot_M-pyrifera_M_contig914.21182.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig914 9645..10790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.8362195-UTR-M-pyrifera_M_contig914:9476..96441622816826.8362195-UTR-M-pyrifera_M_contig914:9476..9644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig914 9477..9644 -
1692278201.520258-UTR-M-pyrifera_M_contig914:9476..96441692278201.520258-UTR-M-pyrifera_M_contig914:9476..9644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig914 9477..9644 -
1622816826.8845797-UTR-M-pyrifera_M_contig914:10790..108111622816826.8845797-UTR-M-pyrifera_M_contig914:10790..10811Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig914 10791..10811 -
1692278201.5634904-UTR-M-pyrifera_M_contig914:10790..108111692278201.5634904-UTR-M-pyrifera_M_contig914:10790..10811Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig914 10791..10811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.8469563-CDS-M-pyrifera_M_contig914:9644..97591622816826.8469563-CDS-M-pyrifera_M_contig914:9644..9759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 9645..9759 -
1692278201.5316055-CDS-M-pyrifera_M_contig914:9644..97591692278201.5316055-CDS-M-pyrifera_M_contig914:9644..9759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 9645..9759 -
1622816826.8572206-CDS-M-pyrifera_M_contig914:10184..102371622816826.8572206-CDS-M-pyrifera_M_contig914:10184..10237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 10185..10237 -
1692278201.5421712-CDS-M-pyrifera_M_contig914:10184..102371692278201.5421712-CDS-M-pyrifera_M_contig914:10184..10237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 10185..10237 -
1622816826.870528-CDS-M-pyrifera_M_contig914:10730..107901622816826.870528-CDS-M-pyrifera_M_contig914:10730..10790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 10731..10790 -
1692278201.5535066-CDS-M-pyrifera_M_contig914:10730..107901692278201.5535066-CDS-M-pyrifera_M_contig914:10730..10790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig914 10731..10790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig914.21182.1

>prot_M-pyrifera_M_contig914.21182.1 ID=prot_M-pyrifera_M_contig914.21182.1|Name=mRNA_M-pyrifera_M_contig914.21182.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MLNVAYGMSSSQIDNMGHLGGFLGGALVTFFIGPRLRRRLNPFTNEPYII
DESPNLSFPRFGKRSGGSPEEKRWP*
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mRNA from alignment at M-pyrifera_M_contig914:9477..10811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig914.21182.1 ID=mRNA_M-pyrifera_M_contig914.21182.1|Name=mRNA_M-pyrifera_M_contig914.21182.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at M-pyrifera_M_contig914:9477..10811- (Macrocystis pyrifera P11B4 male)
CAGAGCGTCGCGCAGACGGTGATGCTTAACGTTGCCTACGGCATGAGCAG
CTCACAGATAGACAATATGGGACACTTGGGGGTGAGTTCGTGACGGCATC
TATTCGCAGATCCATCTGAAATCTTGTGAGGGAGCAGCACGAGAGAACAC
AAGGTTGCACCGCCCGCTCCCCCCGCCCCCAACTCTTGCTTGGTGAAGGC
GAGTGATGAAAAAGCGAACGAGATTTGCCGCTGGGTGTGTGGAAGCGAGC
TGTGGGCGGACGCATGAGAGATCTTTGTTGCACGAAAATACGGCGAAGGC
GGGTGTAACGATGGACGACAGACCGCGCACGTCCTACTGCGTATTGTTTT
GCCGTTCCCCGGTGTCCTATGCCTGCCGTCTACCGAAAATTGCCGGAGAG
TGGGAAGCGCAACGTTCCATTACATGGCTGTCCCTTCGAGCTTCTGGCCC
GTGCGGATCGTAACGCCTCCTCGCCTTCCCTCTGTGTCTTACCCTGACGC
CCCGACCTCGTGTATCTTTCCCTCTTCCGCCACGCTCCATCCCCGGGTGC
ATGCCTATGGATGGATGACCGCAGGGGTTTCTAGGCGGCGCGTTGGTTAC
GTTTTTCATCGGGCCACGTTTGAGGAGGTAACGTCCAACAGTCAGCTTGG
CCGATTTTAAGTTTTGTACTTGTACGCCGTGCGTAAATGTCCTCTCGTGC
AAGATTGTATGTCTATAGTGTTCTGCGGTCGGTCCAGCCAACAATATAGA
AGGACAGAACAAAACTCCTTGTATGTACGAGGGGCGCAAAAGGTGCAAGC
GATGAGGAGATCTATTGTGGTGGGTATGGCACCCAACGCCAGAAGATGGG
TTTCGATTACGGCAATTTTATGGGCTGGCGGCGGCCATCCCTTAGCTGCG
GCATATTTTTTTCCTCCGATCGCACCCCACCCCCTGTACTCTGCCCCCCC
TCTTCAGCACCCACATCAATGCCCCCGCCCGCCTCCGTACCCCCTGGTCT
CCCCCACGTCCTCTTGGTCCTGCCGCTGCCCCTTCTCGTCCGCCTGCGAC
AGGCGATTGAACCCCTTCACAAATGAGCCGTACATCATCGACGAGAGTCC
CAACCTTTCGTTTCCGCGGTTCGGGAAGAGGAGCGGCGGATCGCCTGAAG
AGAAGCGGTGGCCATGACGGCGCCCGTCTCTAACGCGACCGTTAGCGGGC
GTTGCATCTCGACACCGCGATGCCGCTATCAATGTTAACATACCGACGGA
ATTGCCGTTTTTCCGACGGAATAAGTATTTATACGAGTTGTGCTGTATGG
TGTACCATTTCATTGTACAGCGAATAGGATCGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig914:9477..10811-

>mRNA_M-pyrifera_M_contig914.21182.1 ID=mRNA_M-pyrifera_M_contig914.21182.1|Name=mRNA_M-pyrifera_M_contig914.21182.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig914:9477..10811- (Macrocystis pyrifera P11B4 male)
ATGCTTAACGTTGCCTACGGCATGAGCAGCTCACAGATAGACAATATGGG
ACACTTGGGGATGCTTAACGTTGCCTACGGCATGAGCAGCTCACAGATAG
ACAATATGGGACACTTGGGGGGGTTTCTAGGCGGCGCGTTGGTTACGTTT
TTCATCGGGCCACGTTTGAGGAGGGGTTTCTAGGCGGCGCGTTGGTTACG
TTTTTCATCGGGCCACGTTTGAGGAGGCGATTGAACCCCTTCACAAATGA
GCCGTACATCATCGACGAGAGTCCCAACCTTTCGTTTCCGCGGTTCGGGA
AGAGGAGCGGCGGATCGCCTGAAGAGAAGCGGTGGCCATGAGCGATTGAA
CCCCTTCACAAATGAGCCGTACATCATCGACGAGAGTCCCAACCTTTCGT
TTCCGCGGTTCGGGAAGAGGAGCGGCGGATCGCCTGAAGAGAAGCGGTGG
CCATGA
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