mRNA_M-pyrifera_M_contig9139.21180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9139.21180.1
Unique NamemRNA_M-pyrifera_M_contig9139.21180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9139.21180.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.170e-69
Identity = 166/288 (57.64%), Postives = 183/288 (63.54%), Query Frame = 1 
Query:    1 EDEGKALLSSPSTVSRRENIFLASRLTTNAFKTWSQAGVSMAGVTDLLGIFGHERYMLAYTGGR-------------GVGGGGSSDAEGSAVKPGPSNNSKKAKKKIKKSGSRGVASVILHKDATGADTVKSLLALEYFQDELREAGFDVVGAPPPPLS--RSLSQATKASSTVSTEGAPVVEAVAVKGAXXXXXXXXXXXXXXXXXXXXXXXEPSGEKGAGWDESRGVG-AGGHRHHPSPAELRRCLEAARRRADDGTPGFFAALRALGWSTEKFMFGNIKSRVEWR 816
            E+ GK LLSSPSTVSRRENIFLASRLTTNAFKTWSQAGVSM GVTDLL IFG+ERYMLAYT  +             G GGGG   A                         RG+ SVILH+DATGADTVKSLLALEY QDEL++AGF+VVGAPP   S  R++  A K +  V+ +G+P V   A        XXXXXXXXXX           S    A    + G G A   R  PS AELRRCLEAARRRA++G PGFFAAL  LGWSTEKFMFGNIKSRVEWR
Sbjct:  526 EEAGKGLLSSPSTVSRRENIFLASRLTTNAFKTWSQAGVSMDGVTDLLRIFGNERYMLAYTEKKRRRQAKRIIRARAGDGGGGDRAAP------------------------RGIVSVILHRDATGADTVKSLLALEYLQDELKQAGFEVVGAPPAARSGGRAMPPAAK-TRPVNGDGSPAVAEPAAAAVTRGVXXXXXXXXXXGEAASGAPTPRSSGGAAPVLSAAGAGRAESERPQPSSAELRRCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEWR 788
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9139.21180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT88_ECTSI1.170e-6957.64Putative glutamate/ornithine acetyltransferase (IS... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9139contigM-pyrifera_M_contig9139:188..1583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue8.4e-63
Seed eggNOG ortholog2880.D7FT88
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size822
Cds size822
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9139.21180.1prot_M-pyrifera_M_contig9139.21180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9139 188..1583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.655775-CDS-M-pyrifera_M_contig9139:187..2951622816826.655775-CDS-M-pyrifera_M_contig9139:187..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 188..295 +
1692278201.398225-CDS-M-pyrifera_M_contig9139:187..2951692278201.398225-CDS-M-pyrifera_M_contig9139:187..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 188..295 +
1622816826.6736903-CDS-M-pyrifera_M_contig9139:740..10951622816826.6736903-CDS-M-pyrifera_M_contig9139:740..1095Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 741..1095 +
1692278201.4117362-CDS-M-pyrifera_M_contig9139:740..10951692278201.4117362-CDS-M-pyrifera_M_contig9139:740..1095Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 741..1095 +
1622816826.689577-CDS-M-pyrifera_M_contig9139:1224..15831622816826.689577-CDS-M-pyrifera_M_contig9139:1224..1583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 1225..1583 +
1692278201.4221225-CDS-M-pyrifera_M_contig9139:1224..15831692278201.4221225-CDS-M-pyrifera_M_contig9139:1224..1583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9139 1225..1583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9139.21180.1

>prot_M-pyrifera_M_contig9139.21180.1 ID=prot_M-pyrifera_M_contig9139.21180.1|Name=mRNA_M-pyrifera_M_contig9139.21180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
EDEGKALLSSPSTVSRRENIFLASRLTTNAFKTWSQAGVSMAGVTDLLGI
FGHERYMLAYTGGRGVGGGGSSDAEGSAVKPGPSNNSKKAKKKIKKSGSR
GVASVILHKDATGADTVKSLLALEYFQDELREAGFDVVGAPPPPLSRSLS
QATKASSTVSTEGAPVVEAVAVKGAGAGAGVEVGAVAAAAAGVGTGAGEP
SGEKGAGWDESRGVGAGGHRHHPSPAELRRCLEAARRRADDGTPGFFAAL
RALGWSTEKFMFGNIKSRVEWRI*
back to top

mRNA from alignment at M-pyrifera_M_contig9139:188..1583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9139.21180.1 ID=mRNA_M-pyrifera_M_contig9139.21180.1|Name=mRNA_M-pyrifera_M_contig9139.21180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1396bp|location=Sequence derived from alignment at M-pyrifera_M_contig9139:188..1583+ (Macrocystis pyrifera P11B4 male)
GAGGACGAGGGGAAGGCGCTGCTGTCGTCCCCGTCGACGGTTTCGCGGCG
AGAGAACATTTTCCTGGCTTCGAGGCTGACCACCAACGCCTTCAAGACTT
GGTCGCAGGTGCGGAGCGCGCTGCGAGACTCTCGCTCGCGACCCGAAGGC
TTTGTGTATATGTGTGGCATGCTGTGCGCGTATGCCATACCGCCTCCAAG
CGTTGCAGAGGGGCTAGATGGAGGAAGAGGGAGCGCGGACGGGCGGCAGT
ACTTAATCGTTTGTTGCATCGTGGTGGTATGGCCAGGGGGGAAAAAACTT
TTGCGTTCCGAAGCGCCAAGGGAGAGAGATGATATACTGTAGTATATCGT
CGACATCGTTTCTCTCTTTTACCAACAAATACATTTTTTCCGCAAGTCCT
GCAAATTACTATCCACTCTCGCTCCCCTTTTCTCTCTTTACCAACAGTTG
CATTGCAATGCCGCGAGCTCTGCGTATAAACCAATCTATCACTTGCCTGT
TCTCCCTCCGCCCTACCGGACCGGTCCCTGCTTGATTATCCTGCCGTGCA
AAGGCCGGCGTGAGCATGGCCGGGGTGACCGACCTCCTCGGCATCTTCGG
CCACGAGCGGTATATGCTAGCGTACACGGGGGGTCGCGGCGTTGGCGGCG
GCGGTAGCAGCGACGCCGAGGGAAGCGCCGTCAAGCCGGGGCCAAGCAAC
AACAGCAAGAAGGCGAAGAAGAAAATAAAAAAGTCCGGGTCGAGGGGGGT
GGCGAGCGTGATACTCCACAAGGATGCCACCGGGGCGGACACCGTGAAGT
CTCTGCTAGCCCTGGAGTACTTCCAGGACGAGCTGAGGGAAGCTGGCTTT
GACGTTGTCGGAGCGCCGCCGCCGCCGTTGTCGCGGTCATTATCGCAGGC
CACGAAGGGTGACAGCCCCGAGGAGCGGCGCGTCAAAGGCAATAATCCCG
CCGTCGTTAACGGCGACTCGGGGGTTGGAGTTGCTGTTGCAGGAGAAGGT
GTTTCCGTTGAGGGTTTGGCGAAGGGGACGGTCGTAGCATCATCGACGGT
GTCGACCGAAGGTGCACCTGTGGTGGAGGCGGTGGCGGTGAAGGGGGCGG
GGGCTGGGGCGGGGGTAGAGGTGGGGGCGGTCGCGGCAGCGGCGGCGGGA
GTGGGGACGGGGGCAGGAGAACCGAGCGGGGAGAAAGGGGCGGGTTGGGA
CGAGTCGCGGGGGGTGGGGGCGGGGGGGCACCGTCACCACCCGTCGCCCG
CGGAGCTCCGCCGCTGCTTGGAGGCGGCGCGGCGGAGGGCGGACGACGGG
ACCCCCGGCTTTTTCGCGGCGCTGCGAGCGCTGGGGTGGAGCACGGAGAA
GTTCATGTTCGGCAACATCAAGTCGAGAGTCGAGTGGAGAATTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9139:188..1583+

>mRNA_M-pyrifera_M_contig9139.21180.1 ID=mRNA_M-pyrifera_M_contig9139.21180.1|Name=mRNA_M-pyrifera_M_contig9139.21180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig9139:188..1583+ (Macrocystis pyrifera P11B4 male)
GAGGACGAGGGGAAGGCGCTGCTGTCGTCCCCGTCGACGGTTTCGCGGCG
AGAGAACATTTTCCTGGCTTCGAGGCTGACCACCAACGCCTTCAAGACTT
GGTCGCAGGAGGACGAGGGGAAGGCGCTGCTGTCGTCCCCGTCGACGGTT
TCGCGGCGAGAGAACATTTTCCTGGCTTCGAGGCTGACCACCAACGCCTT
CAAGACTTGGTCGCAGGCCGGCGTGAGCATGGCCGGGGTGACCGACCTCC
TCGGCATCTTCGGCCACGAGCGGTATATGCTAGCGTACACGGGGGGTCGC
GGCGTTGGCGGCGGCGGTAGCAGCGACGCCGAGGGAAGCGCCGTCAAGCC
GGGGCCAAGCAACAACAGCAAGAAGGCGAAGAAGAAAATAAAAAAGTCCG
GGTCGAGGGGGGTGGCGAGCGTGATACTCCACAAGGATGCCACCGGGGCG
GACACCGTGAAGTCTCTGCTAGCCCTGGAGTACTTCCAGGACGAGCTGAG
GGAAGCTGGCTTTGACGTTGTCGGAGCGCCGCCGCCGCCGTTGTCGCGGT
CATTATCGCAGGCCACGAAGGGCCGGCGTGAGCATGGCCGGGGTGACCGA
CCTCCTCGGCATCTTCGGCCACGAGCGGTATATGCTAGCGTACACGGGGG
GTCGCGGCGTTGGCGGCGGCGGTAGCAGCGACGCCGAGGGAAGCGCCGTC
AAGCCGGGGCCAAGCAACAACAGCAAGAAGGCGAAGAAGAAAATAAAAAA
GTCCGGGTCGAGGGGGGTGGCGAGCGTGATACTCCACAAGGATGCCACCG
GGGCGGACACCGTGAAGTCTCTGCTAGCCCTGGAGTACTTCCAGGACGAG
CTGAGGGAAGCTGGCTTTGACGTTGTCGGAGCGCCGCCGCCGCCGTTGTC
GCGGTCATTATCGCAGGCCACGAAGGCATCATCGACGGTGTCGACCGAAG
GTGCACCTGTGGTGGAGGCGGTGGCGGTGAAGGGGGCGGGGGCTGGGGCG
GGGGTAGAGGTGGGGGCGGTCGCGGCAGCGGCGGCGGGAGTGGGGACGGG
GGCAGGAGAACCGAGCGGGGAGAAAGGGGCGGGTTGGGACGAGTCGCGGG
GGGTGGGGGCGGGGGGGCACCGTCACCACCCGTCGCCCGCGGAGCTCCGC
CGCTGCTTGGAGGCGGCGCGGCGGAGGGCGGACGACGGGACCCCCGGCTT
TTTCGCGGCGCTGCGAGCGCTGGGGTGGAGCACGGAGAAGTTCATGTTCG
GCAACATCAAGTCGAGAGTCGAGTGGAGAATTTAACATCATCGACGGTGT
CGACCGAAGGTGCACCTGTGGTGGAGGCGGTGGCGGTGAAGGGGGCGGGG
GCTGGGGCGGGGGTAGAGGTGGGGGCGGTCGCGGCAGCGGCGGCGGGAGT
GGGGACGGGGGCAGGAGAACCGAGCGGGGAGAAAGGGGCGGGTTGGGACG
AGTCGCGGGGGGTGGGGGCGGGGGGGCACCGTCACCACCCGTCGCCCGCG
GAGCTCCGCCGCTGCTTGGAGGCGGCGCGGCGGAGGGCGGACGACGGGAC
CCCCGGCTTTTTCGCGGCGCTGCGAGCGCTGGGGTGGAGCACGGAGAAGT
TCATGTTCGGCAACATCAAGTCGAGAGTCGAGTGGAGAATTTAA
back to top