mRNA_M-pyrifera_M_contig91291.21159.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91291.21159.1
Unique NamemRNA_M-pyrifera_M_contig91291.21159.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A1J3DK21_NOCCA (Uncharacterized protein C6G9.01c n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DK21_NOCCA)

HSP 1 Score: 67.8 bits (164), Expect = 3.890e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  154 EEEKRLVALRRLERAQKMANG-QRDPDDPVPVRYEEGLPVYTEEQLGMNKG--GGTALCPFDCDCCF 345
            EE K  +A +  +R +K   G  ++P   V  R E+GLPVYTE++LG NK   GGT LCPFDCDCCF
Sbjct:   64 EETKVEIAKKNRKRKRKENGGLNKNPKTRVRKRTEDGLPVYTEDELGFNKAYAGGTPLCPFDCDCCF 130
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A1J3F0B4_NOCCA (Uncharacterized protein C6G9.01c (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F0B4_NOCCA)

HSP 1 Score: 67.8 bits (164), Expect = 8.570e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  154 EEEKRLVALRRLERAQKMANG-QRDPDDPVPVRYEEGLPVYTEEQLGMNKG--GGTALCPFDCDCCF 345
            EE K  +A +  +R +K   G  ++P   V  R E+GLPVYTE++LG NK   GGT LCPFDCDCCF
Sbjct:  101 EETKVEIAKKNRKRKRKENGGLNKNPKTRVRKRTEDGLPVYTEDELGFNKAYAGGTPLCPFDCDCCF 167
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A1J3IVD2_NOCCA (Uncharacterized protein C6G9.01c n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IVD2_NOCCA)

HSP 1 Score: 65.1 bits (157), Expect = 3.950e-11
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  220 RDPDDPVPVRYEEGLPVYTEEQLGMNKG--GGTALCPFDCDCCF 345
            ++P   V  R E+GLPVYTE++LG NK   GGT LCPFDCDCCF
Sbjct:   83 KNPKTRVRKRTEDGLPVYTEDELGFNKAYAGGTPLCPFDCDCCF 126
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A061RCL0_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RCL0_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 9.680e-11
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  247 RYEEGLPVYTEEQLGMNKGGGTALCPFDCDCCF 345
            R EEG P+Y EE+L +NKGG T LCPFDCDCCF
Sbjct:   88 RTEEGFPIYNEEELKLNKGGDTDLCPFDCDCCF 120
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A0G4F5Z7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F5Z7_VITBC)

HSP 1 Score: 64.3 bits (155), Expect = 1.900e-10
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  241 PVRY-EEGLPVYTEEQLGMNKGGGTALCPFDCDCCF 345
            P RY EEG P+YTEE+L + +GGGT LCPFDCDCCF
Sbjct:  134 PRRYTEEGWPIYTEEELRIGQGGGTPLCPFDCDCCF 169
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: D8LF26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF26_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.390e-10
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  229 DDPVPVRYE-EGLPVYTEEQLGMNKGGGTALCPFDCDCCF 345
            D+  PVR++ EGLP+YT E L + +GGGTA CPFDCDCCF
Sbjct:  143 DEVKPVRFDDEGLPIYTWESLRIGQGGGTAACPFDCDCCF 182
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A8K1CU05_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU05_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 5.500e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  241 PVRYEE-GLPVYTEEQLGMNKGGGTALCPFDCDCCF 345
            PVRY+E GLP+YTEE L +NKGG TA CPFDC CCF
Sbjct:  180 PVRYDEDGLPIYTEESLQINKGGDTAECPFDCWCCF 215
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A835K2X7_9ROSI (Uncharacterized protein n=2 Tax=Salix TaxID=40685 RepID=A0A835K2X7_9ROSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.550e-10
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  223 DPDDPVPVRYEEGLPVYTEEQLGMNK--GGGTALCPFDCDCCF 345
            DP      + E+GL +YTEE+LG +K  GGGTALCPFDCDCCF
Sbjct:  130 DPPSRSRKKTEDGLNIYTEEELGFSKSSGGGTALCPFDCDCCF 172
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: UPI000D1C7F07 (uncharacterized protein C6G9.01c-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7F07)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-9
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  247 RYEEGLPVYTEEQLGMNK--GGGTALCPFDCDCCF 345
            + +EG  VYTEE+LG NK   GGTALCPFDCDCCF
Sbjct:   64 KTQEGFSVYTEEELGCNKKDAGGTALCPFDCDCCF 98
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BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Match: A0A3M6VH65_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VH65_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.050e-9
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  232 DPVPVRYEE-GLPVYTEEQLGMNKGGGTALCPFDCDCCF 345
            DP PVRY+E GLP+YTE  L +N+GG T  CPFDC CCF
Sbjct:  176 DPRPVRYDEDGLPIYTEASLQINRGGNTKDCPFDCWCCF 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91291.21159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3DK21_NOCCA3.890e-1252.24Uncharacterized protein C6G9.01c n=1 Tax=Noccaea c... [more]
A0A1J3F0B4_NOCCA8.570e-1252.24Uncharacterized protein C6G9.01c (Fragment) n=2 Ta... [more]
A0A1J3IVD2_NOCCA3.950e-1163.64Uncharacterized protein C6G9.01c n=1 Tax=Noccaea c... [more]
A0A061RCL0_9CHLO9.680e-1172.73Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A0G4F5Z7_VITBC1.900e-1072.22Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D8LF26_ECTSI2.390e-1065.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1CU05_PYTOL5.500e-1075.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835K2X7_9ROSI5.550e-1062.79Uncharacterized protein n=2 Tax=Salix TaxID=40685 ... [more]
UPI000D1C7F071.290e-971.43uncharacterized protein C6G9.01c-like n=2 Tax=Sela... [more]
A0A3M6VH65_9STRA2.050e-966.67Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91291contigM-pyrifera_M_contig91291:229..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.7028
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Eukaryotic protein of unknown function (DUF1764)
EggNOG OGs2E28N@1,2REF7@2759,3QFHP@4776
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_006470.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816825.5356538-CDS-M-pyrifera_M_contig91291:228..5761622816825.5356538-CDS-M-pyrifera_M_contig91291:228..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91291 229..576 +
1692278200.7342439-CDS-M-pyrifera_M_contig91291:228..5761692278200.7342439-CDS-M-pyrifera_M_contig91291:228..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91291 229..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91291.21159.1prot_M-pyrifera_M_contig91291.21159.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91291 229..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91291.21159.1

>prot_M-pyrifera_M_contig91291.21159.1 ID=prot_M-pyrifera_M_contig91291.21159.1|Name=mRNA_M-pyrifera_M_contig91291.21159.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MVGKKRRKKKGGDGIDELFAKRRKKKEKKEKVVETEEEEGGEGGGEGGLS
FEEEKRLVALRRLERAQKMANGQRDPDDPVPVRYEEGLPVYTEEQLGMNK
GGGTALCPFDCDCCF*
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mRNA from alignment at M-pyrifera_M_contig91291:229..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91291.21159.1 ID=mRNA_M-pyrifera_M_contig91291.21159.1|Name=mRNA_M-pyrifera_M_contig91291.21159.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig91291:229..576+ (Macrocystis pyrifera P11B4 male)
ATGGTTGGGAAGAAGCGCAGGAAGAAGAAGGGAGGGGATGGGATTGATGA
GTTGTTTGCAAAACGGAGGAAAAAGAAGGAGAAGAAAGAAAAGGTGGTGG
AAACGGAGGAGGAAGAGGGAGGTGAAGGAGGTGGGGAAGGTGGGTTGAGT
TTTGAAGAAGAGAAGAGGTTGGTCGCGTTGAGGAGGCTGGAGAGAGCACA
GAAGATGGCGAACGGACAAAGAGACCCTGATGATCCTGTGCCAGTGCGGT
ATGAGGAAGGATTGCCAGTTTATACCGAAGAACAGCTCGGAATGAACAAG
GGCGGAGGCACTGCGCTGTGTCCGTTTGACTGTGACTGCTGTTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91291:229..576+

>mRNA_M-pyrifera_M_contig91291.21159.1 ID=mRNA_M-pyrifera_M_contig91291.21159.1|Name=mRNA_M-pyrifera_M_contig91291.21159.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig91291:229..576+ (Macrocystis pyrifera P11B4 male)
ATGGTTGGGAAGAAGCGCAGGAAGAAGAAGGGAGGGGATGGGATTGATGA
GTTGTTTGCAAAACGGAGGAAAAAGAAGGAGAAGAAAGAAAAGGTGGTGG
AAACGGAGGAGGAAGAGGGAGGTGAAGGAGGTGGGGAAGGTGGGTTGAGT
TTTGAAGAAGAGAAGAGGTTGGTCGCGTTGAGGAGGCTGGAGAGAGCACA
GAAGATGGCGAACGGACAAAGAGACCCTGATGATCCTGTGCCAGTGCGGT
ATGAGGAAGGATTGCCAGTTTATACCGAAGAACAGCTCGGAATGAACAAG
GGCGGAGGCACTGCGCTGTGTCCGTTTGACTGTGACTGCTGTTTTTAGAT
GGTTGGGAAGAAGCGCAGGAAGAAGAAGGGAGGGGATGGGATTGATGAGT
TGTTTGCAAAACGGAGGAAAAAGAAGGAGAAGAAAGAAAAGGTGGTGGAA
ACGGAGGAGGAAGAGGGAGGTGAAGGAGGTGGGGAAGGTGGGTTGAGTTT
TGAAGAAGAGAAGAGGTTGGTCGCGTTGAGGAGGCTGGAGAGAGCACAGA
AGATGGCGAACGGACAAAGAGACCCTGATGATCCTGTGCCAGTGCGGTAT
GAGGAAGGATTGCCAGTTTATACCGAAGAACAGCTCGGAATGAACAAGGG
CGGAGGCACTGCGCTGTGTCCGTTTGACTGTGACTGCTGTTTTTAG
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