mRNA_M-pyrifera_M_contig90907.21076.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig90907.21076.1
Unique Name	mRNA_M-pyrifera_M_contig90907.21076.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A131YIN1_RHIAP (Protein VAC14 homolog n=5 Tax=Ixodidae TaxID=6939 RepID=A0A131YIN1_RHIAP)

HSP 1 Score: 92.0 bits (227), Expect = 2.280e-19
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R LSD+  EKRK  A E+ ++++   S+  V+++R+LL+++GQ++A +  AN RKGGV  LA+ ALAL +D   Y+D LV P+LA  SDSD+RVRYYA EA  +VV  A  A+L
Sbjct:   18 RALSDKLYEKRKTAALEIEKMVKDFMSKDNVTQIRKLLKLLGQDFALSHNANSRKGGVIGLAAIALALGKDSGPYVDDLVKPILACLSDSDSRVRYYASEALYNVVKVARGAVL 131

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: UPI001895011C (LOW QUALITY PROTEIN: uncharacterized protein LOC119375168 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895011C)

HSP 1 Score: 91.7 bits (226), Expect = 3.070e-19
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R LSD+  EKRK  A E+ ++++   S+  V+++R+LL+++GQ++A +  AN RKGGV  LA+ ALAL +D   Y+D LV P+LA  SDSD RVRYYA EA  +VV  A  A+L
Sbjct:   18 RALSDKLYEKRKTAALEIEKMVKDFMSKDNVTQIRKLLKLLGQDFALSHNANSRKGGVIGLAAIALALGKDSGPYVDDLVKPILACLSDSDCRVRYYASEALYNVVKVARGAVL 131

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A6J1S973_FRAOC (Protein VAC14 homolog n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1S973_FRAOC)

HSP 1 Score: 89.0 bits (219), Expect = 2.720e-18
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R L+D+  +KRK  A E+ ++++   +R +  E+R+L++V+GQ++AG+Q  N RKGG+  LA+ A+AL +D   Y   L+ P+LA FSDSD+RVRYYA E+  +VV  A  A+L
Sbjct:   15 RALNDKIYDKRKAAALEIEKMVKDFVTRNRSQELRQLIKVLGQDFAGSQNPNTRKGGLIGLAATAIALGKDTGQYTQELILPILACFSDSDSRVRYYACESLYNVVKVARGAVL 128

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A1B6CKU4_9HEMI (Protein VAC14 homolog n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CKU4_9HEMI)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-17
Identity = 49/114 (42.98%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R L+D+  +KRK  A E+ ++++   +  + +E+R LL+V+GQ++A +Q A+ RKGG+  LA+ A+AL +D + Y + L+ P+LA FSDSD RVRYYA E+  +VV  A  ++L
Sbjct:   15 RALNDKIYDKRKAAAQEIEKMVKDFAANNKKNEIRRLLKVLGQDFATSQNAHSRKGGLIGLAAIAIALGKDTSEYTEGLIRPILANFSDSDLRVRYYACESLYNVVKVARSSVL 128

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A1B6E9H2_9HEMI (Protein VAC14 homolog n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E9H2_9HEMI)

HSP 1 Score: 87.0 bits (214), Expect = 1.290e-17
Identity = 49/114 (42.98%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R L+D+  +KRK  A E+ ++++   +  + +E+R LL+V+GQ++A +Q A+ RKGG+  LA+ A+AL +D + Y + L+ P+LA FSDSD RVRYYA E+  +VV  A  ++L
Sbjct:   15 RALNDKIYDKRKAAAQEIEKMVKDFAANNKKNEIRRLLKVLGQDFATSQNAHSRKGGLIGLAAIAIALGKDTSEYTEGLIRPILANFSDSDLRVRYYACESLYNVVKVARSSVL 128

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A6P8ZKT8_THRPL (Protein VAC14 homolog n=2 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZKT8_THRPL)

HSP 1 Score: 87.0 bits (214), Expect = 1.290e-17
Identity = 50/114 (43.86%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R L+D+  +KRK  A E+ ++++   +R +  E+R+L++V+GQ++AG+Q  N RKGG+  LA+ ++AL +D   Y + LV P+LA FSD D RVRYYA E+  +VV  A  A+L
Sbjct:   15 RALNDKIYDKRKAAALEIEKMVKDFVTRNKTQELRQLMKVLGQDFAGSQNPNTRKGGLIGLAATSIALGKDTGQYTEELVLPILACFSDGDLRVRYYACESLYNVVKIARGAVL 128

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A067QRT8_ZOONE (Protein VAC14 homolog n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QRT8_ZOONE)

HSP 1 Score: 83.2 bits (204), Expect = 2.890e-16
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTA 327
            R L+D+  EKRK  A E+ ++++         ++++LL+V+GQ++A +Q  N +KGG+  LA+ A+AL +D A Y D L+ P+LA FSDSD RVRYYA E+  +VV  A
Sbjct:   16 RALNDKLYEKRKAAALEIEKMVKEFARVNNTVQIKKLLKVLGQDFATSQNTNTKKGGLIGLAAMAVALGKDTALYTDELIQPILACFSDSDLRVRYYACESLYNVVKVA 124

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A7R9ABI4_9CRUS (Protein VAC14 homolog n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9ABI4_9CRUS)

HSP 1 Score: 82.8 bits (203), Expect = 3.890e-16
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVV 318
            R L D+  +KRK  A E+ ++++   +    +++++LL V+GQE+A +Q  N RKGG+  LA+ A+AL +D + YL+ L  P+LA FSD+DARVRY+A EA  ++V
Sbjct:   15 RALGDKIYDKRKAAALEIEKMVKDFAAVSNTTQIKKLLDVLGQEFAMSQNPNCRKGGLIGLAATAIALGKDSSVYLEELTKPILASFSDTDARVRYFACEALYNIV 120

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: A0A834U385_VESGE (Protein VAC14 homolog n=10 Tax=Vespidae TaxID=7438 RepID=A0A834U385_VESGE)

HSP 1 Score: 80.1 bits (196), Expect = 3.470e-15
Identity = 46/114 (40.35%), Postives = 75/114 (65.79%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTAELALL 342
            R L+D+  EKRK  A E+ ++++   +     +++ LL+V+GQ++A +Q  + RKGG+  LA+ A+ L +D   Y++ L+ P++A FSDSD RVRYYA E+  +VV  A  A+L
Sbjct:   16 RSLNDKIYEKRKAAALEIEKMVKEFATHNNTVQIKRLLKVLGQDFATSQNPHTRKGGLIGLAAIAVGLGKDTGQYIEDLIHPIIACFSDSDLRVRYYACESLYNVVKVARGAVL 129

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BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Match: UPI0006B10D9B (protein VAC14 homolog isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B10D9B)

HSP 1 Score: 79.7 bits (195), Expect = 4.740e-15
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1

Query:    1 RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVEAAVHVVSTA 327
            R L+D+  EKRK  A E+ ++++   S   VS+++ LL V+GQ++A +  AN +KGG+  LA+ A+AL ++ + Y+D LV PV+   +D D+RVRYYA EA  +VV  A
Sbjct:   15 RALNDKLYEKRKAAAIEIEKMVKDFASVNNVSQIKRLLWVLGQDFALSSNANSKKGGLIGLAAIAIALGKETSQYIDELVQPVMFCLNDMDSRVRYYAAEALYNVVKVA 123

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig90907.21076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A131YIN1_RHIAP	2.280e-19	49.12	Protein VAC14 homolog n=5 Tax=Ixodidae TaxID=6939 ...	[more]
UPI001895011C	3.070e-19	49.12	LOW QUALITY PROTEIN: uncharacterized protein LOC11...	[more]
A0A6J1S973_FRAOC	2.720e-18	44.74	Protein VAC14 homolog n=1 Tax=Frankliniella occide...	[more]
A0A1B6CKU4_9HEMI	1.210e-17	42.98	Protein VAC14 homolog n=1 Tax=Clastoptera arizonan...	[more]
A0A1B6E9H2_9HEMI	1.290e-17	42.98	Protein VAC14 homolog n=1 Tax=Clastoptera arizonan...	[more]
A0A6P8ZKT8_THRPL	1.290e-17	43.86	Protein VAC14 homolog n=2 Tax=Thrips palmi TaxID=1...	[more]
A0A067QRT8_ZOONE	2.890e-16	44.04	Protein VAC14 homolog n=2 Tax=Zootermopsis nevaden...	[more]
A0A7R9ABI4_9CRUS	3.890e-16	43.40	Protein VAC14 homolog n=1 Tax=Darwinula stevensoni...	[more]
A0A834U385_VESGE	3.470e-15	40.35	Protein VAC14 homolog n=10 Tax=Vespidae TaxID=7438...	[more]
UPI0006B10D9B	4.740e-15	43.12	protein VAC14 homolog isoform X1 n=2 Tax=Limulus p...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig90907	contig	M-pyrifera_M_contig90907:15..356 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Seed ortholog score	84.7
Seed ortholog evalue	3e-14
Seed eggNOG ortholog	136037.KDR12240
KEGG ko	ko:K15305
KEGG Pathway	ko05166,ko05203,map05166,map05203
Hectar predicted targeting category	other localisation
GOs	GO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
EggNOG free text desc.	It is involved in the biological process described with regulation of lipid kinase activity
EggNOG OGs	38BFB@33154,3BD0B@33208,3CT9A@33213,3SI0C@50557,41UJ2@6656,KOG0212@1,KOG0212@2759
COG Functional cat.	S
Best tax level	Insecta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001
Exons	1
Model size	342
Cds size	342
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816821.503113-CDS-M-pyrifera_M_contig90907:14..356	1622816821.503113-CDS-M-pyrifera_M_contig90907:14..356	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90907 15..356 -
1692278198.3440273-CDS-M-pyrifera_M_contig90907:14..356	1692278198.3440273-CDS-M-pyrifera_M_contig90907:14..356	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90907 15..356 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig90907.21076.1	prot_M-pyrifera_M_contig90907.21076.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig90907 15..356 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig90907:15..356-
coding sequence from alignment at M-pyrifera_M_contig90907:15..356-

protein sequence of mRNA_M-pyrifera_M_contig90907.21076.1

>prot_M-pyrifera_M_contig90907.21076.1 ID=prot_M-pyrifera_M_contig90907.21076.1|Name=mRNA_M-pyrifera_M_contig90907.21076.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
RLLSDRAQEKRKQGAGEVMRLIEVLRSRGQVSEVRELLQVVGQEYAGAQQ
ANLRKGGVSALASAALALREDIAGYLDVLVPPVLARFSDSDARVRYYAVE
AAVHVVSTAELALL

mRNA from alignment at M-pyrifera_M_contig90907:15..356-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig90907.21076.1 ID=mRNA_M-pyrifera_M_contig90907.21076.1|Name=mRNA_M-pyrifera_M_contig90907.21076.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig90907:15..356- (Macrocystis pyrifera P11B4 male)
CGCTTGCTGTCGGATCGGGCGCAGGAGAAGCGGAAGCAAGGAGCCGGCGA
GGTGATGCGTCTGATCGAGGTGCTGCGGAGTCGAGGGCAGGTGTCGGAGG
TGCGTGAGCTGCTGCAGGTGGTGGGCCAGGAGTACGCCGGGGCGCAGCAG
GCGAATCTGCGCAAAGGAGGCGTGAGCGCCTTGGCCTCGGCGGCGCTGGC
GCTGCGGGAGGACATTGCGGGGTACTTGGACGTGCTGGTGCCCCCAGTGT
TGGCCCGATTTTCCGACAGCGACGCTCGCGTTCGCTATTACGCCGTGGAG
GCTGCTGTGCATGTGGTTTCGACTGCAGAGTTGGCTTTGCTG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90907:15..356-

>mRNA_M-pyrifera_M_contig90907.21076.1 ID=mRNA_M-pyrifera_M_contig90907.21076.1|Name=mRNA_M-pyrifera_M_contig90907.21076.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig90907:15..356- (Macrocystis pyrifera P11B4 male)
CGCTTGCTGTCGGATCGGGCGCAGGAGAAGCGGAAGCAAGGAGCCGGCGA
GGTGATGCGTCTGATCGAGGTGCTGCGGAGTCGAGGGCAGGTGTCGGAGG
TGCGTGAGCTGCTGCAGGTGGTGGGCCAGGAGTACGCCGGGGCGCAGCAG
GCGAATCTGCGCAAAGGAGGCGTGAGCGCCTTGGCCTCGGCGGCGCTGGC
GCTGCGGGAGGACATTGCGGGGTACTTGGACGTGCTGGTGCCCCCAGTGT
TGGCCCGATTTTCCGACAGCGACGCTCGCGTTCGCTATTACGCCGTGGAG
GCTGCTGTGCATGTGGTTTCGACTGCAGAGTTGGCTTTGCTGCGCTTGCT
GTCGGATCGGGCGCAGGAGAAGCGGAAGCAAGGAGCCGGCGAGGTGATGC
GTCTGATCGAGGTGCTGCGGAGTCGAGGGCAGGTGTCGGAGGTGCGTGAG
CTGCTGCAGGTGGTGGGCCAGGAGTACGCCGGGGCGCAGCAGGCGAATCT
GCGCAAAGGAGGCGTGAGCGCCTTGGCCTCGGCGGCGCTGGCGCTGCGGG
AGGACATTGCGGGGTACTTGGACGTGCTGGTGCCCCCAGTGTTGGCCCGA
TTTTCCGACAGCGACGCTCGCGTTCGCTATTACGCCGTGGAGGCTGCTGT
GCATGTGGTTTCGACTGCAGAGTTGGCTTTGCTG