mRNA_M-pyrifera_M_contig9086.21065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9086.21065.1
Unique NamemRNA_M-pyrifera_M_contig9086.21065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: D7G687_ECTSI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G687_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.940e-68
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 3
Query:    3 NRAGFADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            N  GFADVEKAIA+YG+KAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVV PDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL
Sbjct:  291 NHRGFADVEKAIAEYGRKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVGPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 409          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A6H5KK69_9PHAE (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK69_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 3.170e-67
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 3
Query:   12 GFADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            GFADVEKAIA+YG+KAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVV PDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL
Sbjct:  349 GFADVEKAIAEYGRKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVGPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 464          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A835Z206_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z206_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.100e-58
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FAD+EKAIA Y  KAK G LALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVV  DGQVVARPMMYLALTYDHR++DGREAVTFLKSVA K++DP+RLLLDL
Sbjct:  256 FADIEKAIADYAVKAKAGKLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVV-DGQVVARPMMYLALTYDHRMVDGREAVTFLKSVANKIEDPSRLLLDL 369          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: B7GBE7_PHATC (Dihydrolipoyllysine-residue succinyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBE7_PHATC)

HSP 1 Score: 196 bits (498), Expect = 7.260e-58
Identity = 96/115 (83.48%), Postives = 108/115 (93.91%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FADVE+ IA YGQKAKEGSL+L+DMAGG+FTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVV+  G+VVARPMMYLALTYDHRLIDGRE VTFLKS+A K+ DP++LLL++
Sbjct:  263 FADVERNIAAYGQKAKEGSLSLDDMAGGTFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVNEQGEVVARPMMYLALTYDHRLIDGREGVTFLKSIAEKIADPSKLLLEI 377          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: W7TJE0_9STRA (Dihydrolipoyllysine-residue succinyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.090e-57
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 3
Query:    6 RAGFADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            R  FA VE+ IA YG+KAKEG+LALEDMAGG+FTISNGGVFGSL+GTPIINPPQSAILGMHATKMRAVV  DGQV+ARPMMYLALTYDHRLIDGREAVTFLKSVA K++DP R++L+L
Sbjct:  348 RMSFAGVERQIAMYGKKAKEGALALEDMAGGTFTISNGGVFGSLLGTPIINPPQSAILGMHATKMRAVVGKDGQVMARPMMYLALTYDHRLIDGREAVTFLKSVAAKIEDPRRMVLEL 465          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A7S2K9K3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2K9K3_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.060e-57
Identity = 92/115 (80.00%), Postives = 103/115 (89.57%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FADVE+ IA +G+KA+EGSL+L+DM GG+FTISNGGVFGSLMGTPIIN PQSAILGMHATKMRAVV   G VVARPMMYLALTYDHRLIDGRE VTFLKSVA K+ DP+RL+ D+
Sbjct:    8 FADVERTIALFGKKAREGSLSLDDMTGGTFTISNGGVFGSLMGTPIINQPQSAILGMHATKMRAVVDEKGNVVARPMMYLALTYDHRLIDGREGVTFLKSVADKITDPSRLVFDI 122          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A482RWZ2_9ARCH (Dihydrolipoamide succinyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWZ2_9ARCH)

HSP 1 Score: 187 bits (476), Expect = 6.490e-57
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FAD+EKAI  YG+KAKEG+LALEDMAGG+FTISNGGVFGSL GTPIINPPQSAILGMHATKMRAVV  +G+V ARPMMYLALTYDHRLIDGREAVTFLK +A K++DP R+LL L
Sbjct:   76 FADIEKAIGMYGKKAKEGTLALEDMAGGTFTISNGGVFGSLFGTPIINPPQSAILGMHATKMRAVVV-NGKVEARPMMYLALTYDHRLIDGREAVTFLKGIANKIEDPGRMLLTL 189          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A7R9WST9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WST9_9STRA)

HSP 1 Score: 188 bits (477), Expect = 8.320e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FADVE+ I  Y  KAKEG L+L+DMAGG+FTISNGGVFGSLMGTPIINPPQSAILGMHATKMR VV+  G VVARPMMYLALTYDHRLIDGRE VTFLKS+A K+ DPT+LLLD+
Sbjct:   94 FADVERNIGMYATKAKEGKLSLDDMAGGTFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRPVVNDKGDVVARPMMYLALTYDHRLIDGREGVTFLKSIADKISDPTKLLLDV 208          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A7S3Y2G2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2G2_HETAK)

HSP 1 Score: 189 bits (479), Expect = 1.110e-56
Identity = 96/116 (82.76%), Postives = 104/116 (89.66%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPD-GQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FADVE  IA YGQKAK G LALE+MAGG+FTISNGGVFGSLMGTPIINPPQSAILGMHATK+R VV+P  GQV ARPMMYLALTYDHRLIDGREAVTFLKS+A K++DP RL+L L
Sbjct:  125 FADVESTIAMYGQKAKAGQLALEEMAGGTFTISNGGVFGSLMGTPIINPPQSAILGMHATKLRPVVNPKTGQVEARPMMYLALTYDHRLIDGREAVTFLKSIANKIEDPQRLILGL 240          
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Match: A0A1E7FAG1_9STRA (Putative 2-oxoglutarate dehydrogenase E2 subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAG1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 9.300e-56
Identity = 92/115 (80.00%), Postives = 103/115 (89.57%), Query Frame = 3
Query:   15 FADVEKAIAKYGQKAKEGSLALEDMAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVARPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL 359
            FADVE  IA Y QKAK G+L+L+DM GG+FTISNGGVFGSLMGTPIIN PQSA+LGMHATKMRAVV+  G+VVARPMMYLALTYDHRLIDGRE VTFLKS+A KV DP++LLLD+
Sbjct:   60 FADVEHNIAAYVQKAKNGTLSLDDMTGGTFTISNGGVFGSLMGTPIINLPQSAVLGMHATKMRAVVNEKGEVVARPMMYLALTYDHRLIDGREGVTFLKSIAEKVSDPSKLLLDV 174          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9086.21065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G687_ECTSI1.940e-6895.80Dihydrolipoamide acetyltransferase component of py... [more]
A0A6H5KK69_9PHAE3.170e-6797.41Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A835Z206_9STRA2.100e-5887.83Dihydrolipoyllysine-residue succinyltransferase n=... [more]
B7GBE7_PHATC7.260e-5883.48Dihydrolipoyllysine-residue succinyltransferase n=... [more]
W7TJE0_9STRA1.090e-5783.05Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A7S2K9K3_9STRA3.060e-5780.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A482RWZ2_9ARCH6.490e-5782.61Dihydrolipoamide succinyltransferase (Fragment) n=... [more]
A0A7R9WST9_9STRA8.320e-5780.87Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Y2G2_HETAK1.110e-5682.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7FAG1_9STRA9.300e-5680.00Putative 2-oxoglutarate dehydrogenase E2 subunit n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9086contigM-pyrifera_M_contig9086:7401..9707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D7G687
KEGG rclassRC00004,RC02727,RC02833
KEGG koko:K00658
KEGG ReactionR02570,R02571,R08549
KEGG Pathwayko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrolipoyllysine-residue succinyltransferase activity
EggNOG OGsCOG0508@1,KOG0559@2759
EC2.3.1.61
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons3
Model size666
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9086.21065.1prot_M-pyrifera_M_contig9086.21065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9086 7705..8695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.9826515-UTR-M-pyrifera_M_contig9086:7400..77041622816820.9826515-UTR-M-pyrifera_M_contig9086:7400..7704Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 7401..7704 -
1692278198.0596335-UTR-M-pyrifera_M_contig9086:7400..77041692278198.0596335-UTR-M-pyrifera_M_contig9086:7400..7704Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 7401..7704 -
1622816821.024307-UTR-M-pyrifera_M_contig9086:8695..87161622816821.024307-UTR-M-pyrifera_M_contig9086:8695..8716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 8696..8716 -
1692278198.1051154-UTR-M-pyrifera_M_contig9086:8695..87161692278198.1051154-UTR-M-pyrifera_M_contig9086:8695..8716Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 8696..8716 -
1622816821.0369308-UTR-M-pyrifera_M_contig9086:9642..97071622816821.0369308-UTR-M-pyrifera_M_contig9086:9642..9707Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 9643..9707 -
1692278198.119946-UTR-M-pyrifera_M_contig9086:9642..97071692278198.119946-UTR-M-pyrifera_M_contig9086:9642..9707Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9086 9643..9707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.9961035-CDS-M-pyrifera_M_contig9086:7704..78451622816820.9961035-CDS-M-pyrifera_M_contig9086:7704..7845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9086 7705..7845 -
1692278198.073011-CDS-M-pyrifera_M_contig9086:7704..78451692278198.073011-CDS-M-pyrifera_M_contig9086:7704..7845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9086 7705..7845 -
1622816821.0096056-CDS-M-pyrifera_M_contig9086:8560..86951622816821.0096056-CDS-M-pyrifera_M_contig9086:8560..8695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9086 8561..8695 -
1692278198.086981-CDS-M-pyrifera_M_contig9086:8560..86951692278198.086981-CDS-M-pyrifera_M_contig9086:8560..8695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9086 8561..8695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9086.21065.1

>prot_M-pyrifera_M_contig9086.21065.1 ID=prot_M-pyrifera_M_contig9086.21065.1|Name=mRNA_M-pyrifera_M_contig9086.21065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MAGGSFTISNGGVFGSLMGTPIINPPQSAILGMHATKMRAVVSPDGQVVA
RPMMYLALTYDHRLIDGREAVTFLKSVALKVQDPTRLLLDL*
back to top

mRNA from alignment at M-pyrifera_M_contig9086:7401..9707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9086.21065.1 ID=mRNA_M-pyrifera_M_contig9086.21065.1|Name=mRNA_M-pyrifera_M_contig9086.21065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2307bp|location=Sequence derived from alignment at M-pyrifera_M_contig9086:7401..9707- (Macrocystis pyrifera P11B4 male)
AAAATCGAGCAGGTTTCGCCGACGTGGAGAAGGCCATCGCCAAGTACGGG CAGAAGGCCAAGGAGGTAAATTTCGGCTCGGTTCCGTTCGGTTCGGCTCG GCGTGACGTCGATGGGTATTAGAAAGGCGCCTTTTTTGTTGCTGTCCTGT TGTGGGATAAACGGAATGTTGCACACGTCGGACAGATCACGATCTATCTA TCTGTGTATTGCAGATCATCTATAGATCAGATAGATCATCCAGATCCTAA CCTGCCGTCATGAGGTGCTGTGCAGGATCTGTCTATGTGGTACAGATCCA ACCCACCCAGGAAACACGTCCTAGATCATGCAGACTGTACGACTCCCACC TTGCAGCACGAGCTATAGATCTTTACAGATCGTACAGATCAGGGATATGT CTGCCCTGAAAGGCGTGTTACTAATAGATGTGTCGATAATCTGTCTGAGG CGTGAAATGTTGTGACGTGTTGGCTACTTGTTATTCGCGCATCATCGCCG GAACTGGAGGGCAGGGCTATGATCGGGTAGTACGTTGGCAGTTGGCCCGT TGGTAGTTGGCCCAAGCAGTGTAGGGGGTGTTCTGTCACATGAACATGAA GAAAAGCGTGGGAAACCCCAAGCGAAGCCAAACGAAGCTAGGCGGACCGC TTGTATGCGCCTTCTGCTACATGCTCTATTTTTCTTCTTCTTTTTTGTAC TATTTACCTACGCGTGACCATTTCGATACGTATATTCTGCGTACAAGCTA TTTGTTGTCGCGCTTTGCCAGTTTTGCTTGTTTTCGTGTTGAAGCTATCA ATAGCAATAGTATTAATAGTCTATGCTACTATTAAACAGTGATGAACATT TTTTCGTATCTTGTCCCGTAGTAATTGGGCTGCACAGTGACTCAAGTTCA TACCAGAAGGGATCGTTTCTTAACACACACCCCCACCTCCCTCCCCCTTC CTCCTTTTCTCCAAAACCCACCATTCGTGCTTCGCGCGAAGGGGTCGCTG GCCCTTGAGGACATGGCGGGAGGATCTTTCACCATCTCAAACGGAGGCGT GTTCGGGTCTCTCATGGGCACGCCCATCATCAACCCCCCTCAGTCGGCCA TTCTCGGCATGCACGCCACCAAGATGAGGGCGGTCGTTTCCCCTGATGTG AGTTTTGAAACCGTTTTTTTTTTTTTATATTCAATATTTACTCTATTTGT TTTGAGAGCTGCACGCCGCTTTCCGGGGAGAAAACTGCCTGCAATTTTTT AGTGGGGATAATAAAATACAAAATTTCTCAGAGATCCTTTTGCCTAGTAC TCGTAGCACTTCACGAAAAGGAATTTGCAACCGTTTTAACCGTTGATACT GTTTCAGAACTGCACGATTTTTCGGAACGACTTTTCGGGGAGACGAAAAA GCACTCGGAAATGGAATTGGGACGAAAATTGCAGCTTTTAAAAGGGTTGA AAAACTCGATGGTCCGATGGTTGGGGGTGCATACGATGATTGCTACGCTG GTCCTGGTTCCGTCGGAATCAGGCAAATACTTCTACTTGTCGTGGATAGC ATGTGAGCGTGCTTGGCTCACCGACTTGCGTCTTCACACCACTACCACCA CCACCACCACCACCACGCATTAATGCCTTCTGGCCGTCGACAAAATACCC GTCGCTTGTGACCGAAGCGGTACTCATGCCGTGCTTTCATCTAGTACGCA CACACGCAACCGTTTTTTGACCGTTTCAAAAATCCCGTTGCTTGTAACGA ACGATGCCGGTGCTCGCGTCGTGTTGTCACCCCACCCACACACACATGCC TTCTGACCGTCAACAAAACCTCGTTTGCTTGTGACGGTACCTTACCCTGC TTGCGTCTACAGGGCCAGGTGGTAGCGAGGCCCATGATGTACCTGGCGCT GACCTACGACCACCGACTCATCGACGGTCGGGAGGCGGTCACCTTCCTCA AATCCGTCGCCCTGAAGGTCCAAGACCCGACGCGTCTGCTGCTAGACCTG TAGCTAGGAGTGCGGGCTTGGCTTTCAAACGGGGAGTCTTCCTGTCGAAA AATAATGGCCCAACCTTTTGGAAGCCTCTGCTCTGTGATGTCGGCTTCTT CGTGAGTTTTAAGTACTCGGGGACAGGCATTTTGTAGCACATATTTTTTT TTTGCTTTAAGAGCTTGTGTTTCAGGGTAGAACTGAATTGTGATAACGTT TGTTTGAGCGAGAGAACTAAGAAAGTGGTCCATGGTTGCGCGCAGGACTC GACAACTTTTGTTCGAGTGAAGGACTGAAAGCCTTTGTTCGAGGGGAGGA AAACGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9086:7401..9707-

>mRNA_M-pyrifera_M_contig9086.21065.1 ID=mRNA_M-pyrifera_M_contig9086.21065.1|Name=mRNA_M-pyrifera_M_contig9086.21065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig9086:7401..9707- (Macrocystis pyrifera P11B4 male)
ATGGCGGGAGGATCTTTCACCATCTCAAACGGAGGCGTGTTCGGGTCTCT
CATGGGCACGCCCATCATCAACCCCCCTCAGTCGGCCATTCTCGGCATGC
ACGCCACCAAGATGAGGGCGGTCGTTTCCCCTGATATGGCGGGAGGATCT
TTCACCATCTCAAACGGAGGCGTGTTCGGGTCTCTCATGGGCACGCCCAT
CATCAACCCCCCTCAGTCGGCCATTCTCGGCATGCACGCCACCAAGATGA
GGGCGGTCGTTTCCCCTGATGGCCAGGTGGTAGCGAGGCCCATGATGTAC
CTGGCGCTGACCTACGACCACCGACTCATCGACGGTCGGGAGGCGGTCAC
CTTCCTCAAATCCGTCGCCCTGAAGGTCCAAGACCCGACGCGTCTGCTGC
TAGACCTGTAGGGCCAGGTGGTAGCGAGGCCCATGATGTACCTGGCGCTG
ACCTACGACCACCGACTCATCGACGGTCGGGAGGCGGTCACCTTCCTCAA
ATCCGTCGCCCTGAAGGTCCAAGACCCGACGCGTCTGCTGCTAGACCTGT
AG
back to top