mRNA_M-pyrifera_M_contig90840.21055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90840.21055.1
Unique NamemRNA_M-pyrifera_M_contig90840.21055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90840.21055.1 vs. uniprot
Match: A0A0C2WEK9_9AGAM (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2WEK9_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-6
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:    1 PLLSAWLRFERSSKWPQDVGAIASLKVALVLRLAKALRGAPNVEHAR--------GLADGSLL--VHVKGFAFRVRVLHPPELAIFRRAV 240
            P+  A L+FE+S++WP D+GAI  LK+A    +A+      +  HAR         + DG+ +  V   G+AFR+R+ H  E  +  RA+
Sbjct:  812 PVYDAVLQFEKSARWPDDLGAIQKLKLAWFETIAREFTNKLDGSHARIAMDALASPVEDGAAVEVVLATGYAFRLRIYHDREKFLLERAI 901
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BLAST of mRNA_M-pyrifera_M_contig90840.21055.1 vs. uniprot
Match: A0A183ESK7_9BILA (Nucleolar protein 6 n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183ESK7_9BILA)

HSP 1 Score: 49.3 bits (116), Expect = 5.040e-5
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:    1 PLLSAWLRFERSSKWPQDVGAIASLKVALVLRLAKALRGAPNVEHARGLADGSLLVHVKGFAFRVRVLHPPELAIFRR 234
            P +   L  E+S KW +++GAIA LK A  + LAK L+   +++      D  L+VH     FR+ + +P E+ I R+
Sbjct:  102 PSIEVQLTMEQSGKWGEELGAIARLKTAFYVELAKILKEKYSMQAVP--FDDYLIVHFNTVVFRLVIAYPKEVHIMRK 177
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BLAST of mRNA_M-pyrifera_M_contig90840.21055.1 vs. uniprot
Match: A0A0G4ISB4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISB4_PLABS)

HSP 1 Score: 49.3 bits (116), Expect = 6.710e-5
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    4 LLSAWLRFERSSKWPQDVGAIASLKVALVLRLAKALR--GAPNVEHARGLADGSLLVHVKGFAFRVRVLHPPELAIFR 231
            +L   ++FE SS+WP+D+ AIA +K A+ +R+A  L+  G P           + L  + G AFRV + H  E+AI R
Sbjct:  587 MLPVVVQFESSSRWPEDLSAIARIKSAVHIRMAATLQEQGVPATAFLM-----ATLCWIDGVAFRVEIFHAREIAIRR 659
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90840.21055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0C2WEK9_9AGAM2.160e-634.44U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A183ESK7_9BILA5.040e-534.62Nucleolar protein 6 n=1 Tax=Gongylonema pulchrum T... [more]
A0A0G4ISB4_PLABS6.710e-537.18Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90840contigM-pyrifera_M_contig90840:173..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.5145035-CDS-M-pyrifera_M_contig90840:172..4121622816820.5145035-CDS-M-pyrifera_M_contig90840:172..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90840 173..412 -
1692278197.809629-CDS-M-pyrifera_M_contig90840:172..4121692278197.809629-CDS-M-pyrifera_M_contig90840:172..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90840 173..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90840.21055.1prot_M-pyrifera_M_contig90840.21055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90840 173..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90840.21055.1

>prot_M-pyrifera_M_contig90840.21055.1 ID=prot_M-pyrifera_M_contig90840.21055.1|Name=mRNA_M-pyrifera_M_contig90840.21055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
PLLSAWLRFERSSKWPQDVGAIASLKVALVLRLAKALRGAPNVEHARGLA
DGSLLVHVKGFAFRVRVLHPPELAIFRRAV
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mRNA from alignment at M-pyrifera_M_contig90840:173..412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90840.21055.1 ID=mRNA_M-pyrifera_M_contig90840.21055.1|Name=mRNA_M-pyrifera_M_contig90840.21055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig90840:173..412- (Macrocystis pyrifera P11B4 male)
CCACTTCTCTCTGCATGGTTACGGTTTGAGCGTTCTTCCAAGTGGCCACA
AGATGTTGGTGCAATTGCATCACTGAAAGTTGCATTAGTGTTGCGGTTGG
CCAAGGCATTACGAGGTGCTCCCAACGTAGAGCATGCTCGTGGGCTTGCA
GATGGATCATTGTTAGTGCATGTGAAGGGATTCGCATTCCGTGTTCGAGT
ATTACATCCTCCAGAACTTGCCATCTTTCGACGAGCAGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90840:173..412-

>mRNA_M-pyrifera_M_contig90840.21055.1 ID=mRNA_M-pyrifera_M_contig90840.21055.1|Name=mRNA_M-pyrifera_M_contig90840.21055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig90840:173..412- (Macrocystis pyrifera P11B4 male)
CCACTTCTCTCTGCATGGTTACGGTTTGAGCGTTCTTCCAAGTGGCCACA
AGATGTTGGTGCAATTGCATCACTGAAAGTTGCATTAGTGTTGCGGTTGG
CCAAGGCATTACGAGGTGCTCCCAACGTAGAGCATGCTCGTGGGCTTGCA
GATGGATCATTGTTAGTGCATGTGAAGGGATTCGCATTCCGTGTTCGAGT
ATTACATCCTCCAGAACTTGCCATCTTTCGACGAGCAGTTCCACTTCTCT
CTGCATGGTTACGGTTTGAGCGTTCTTCCAAGTGGCCACAAGATGTTGGT
GCAATTGCATCACTGAAAGTTGCATTAGTGTTGCGGTTGGCCAAGGCATT
ACGAGGTGCTCCCAACGTAGAGCATGCTCGTGGGCTTGCAGATGGATCAT
TGTTAGTGCATGTGAAGGGATTCGCATTCCGTGTTCGAGTATTACATCCT
CCAGAACTTGCCATCTTTCGACGAGCAGTT
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