mRNA_M-pyrifera_M_contig90821.21051.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90821.21051.1
Unique NamemRNA_M-pyrifera_M_contig90821.21051.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A2R6WM18_MARPO (CHCH domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WM18_MARPO)

HSP 1 Score: 84.7 bits (208), Expect = 2.770e-19
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDDD 252
            P EKG FPLDH +EC  AM++YM CLK++K+ S  C  + KVYL+CRM+ GLMA++D++ LG ++ D
Sbjct:   18 PPEKGVFPLDHLHECDAAMKDYMKCLKESKFDSEKCRQLSKVYLECRMERGLMAKQDLKELGFKEGD 84          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A1Y2H9C9_9FUNG (CHCH domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H9C9_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-17
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRD 246
            P ++G+FPLDHD EC   +++Y+ CLK++K  + +C  + K YL+CRM+ GLMA+++M+NLG  D
Sbjct:    7 PQKRGAFPLDHDGECKALVQKYLKCLKESKASNMSCRELSKAYLECRMQRGLMAKDEMQNLGFHD 71          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A5C3R5J8_9AGAR (CHCH domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3R5J8_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 9.270e-17
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGL 240
            P ++GSFPLDH  EC   M+ YM CL+ N   S  C+ V K YL CRMK GLM ++D RNLGL
Sbjct:   17 PPDRGSFPLDHFGECKDEMKLYMDCLRKNSGTSTECQGVSKAYLHCRMKKGLMEQDDWRNLGL 79          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: B3SDQ3_TRIAD (CHCH domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SDQ3_TRIAD)

HSP 1 Score: 76.3 bits (186), Expect = 1.980e-16
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDD 249
            P +KGSFPLDHD EC   M+ YM CL+ + Y  ++C    K YL CRM   LMA+ED +NLG +D+
Sbjct:   12 PPDKGSFPLDHDGECKTFMKTYMQCLEKSNYEQSDCRKEAKEYLQCRMDRQLMAKEDFKNLGFKDE 77          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A1E3PDW6_9ASCO (Uncharacterized protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PDW6_9ASCO)

HSP 1 Score: 77.0 bits (188), Expect = 2.340e-16
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   46 WQPT--EKGSFPLDHDNECGGAMEEYMVCLKDNKYISA-NCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDDD 252
            W+PT  ++GSFPLDHD+EC   M +Y+ CL   +  +A  C  + K YL CRM TGLM +++ +NLGL DDD
Sbjct:   10 WRPTPPQRGSFPLDHDSECSHIMADYLKCLNSTRGTNAPTCRLLAKRYLSCRMDTGLMGQDEWKNLGLPDDD 81          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A336K641_CULSO (CSON012864 protein n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336K641_CULSO)

HSP 1 Score: 75.9 bits (185), Expect = 4.060e-16
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRD 246
            P +KGSFPLDH NEC   M  YM CL  NK  ++ C    K Y++CRM+  LMA+ED++NLG +D
Sbjct:   15 PPQKGSFPLDHFNECKKQMLSYMHCLASNKDDNSKCRVQSKEYIECRMEHNLMAKEDLKNLGFKD 79          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A3S3SME1_9ACAR (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3SME1_9ACAR)

HSP 1 Score: 79.7 bits (195), Expect = 4.860e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDDDE 255
            P EKGSFPLDHDNEC  AM  Y+ CL++++  S+ C A  K YL CRM   LMA+E+ +NLG  +++E
Sbjct:   15 PPEKGSFPLDHDNECKRAMLGYLQCLREHRLNSSECRAQAKAYLKCRMDNDLMAKEEWKNLGFHENEE 82          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: UPI000644CAF1 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CAF1)

HSP 1 Score: 73.6 bits (179), Expect = 4.280e-15
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLG 237
            P +KGSFPLDHD EC   M  Y+ CL DNK  S  C  + K+YL CRM  GLMA+ED+ + G
Sbjct:   14 PPDKGSFPLDHDQECLQPMNSYIKCLADNKNQSRMCMELSKLYLQCRMDRGLMAKEDIDSFG 75          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A4P9XMH5_9FUNG (CHCH domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XMH5_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-14
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 SCGQPFSSHCLEADGWQPTEKGSFPLDH-DNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDDDE 255
            S G+P +S+  +     P ++GSFPLDH  +EC   M++YM+CL++N+     C  + K YL CRM   LM +++MRNLG   DDE
Sbjct:    2 SFGRPPTSNPFKP---TPPDRGSFPLDHYGSECKNVMQQYMLCLRENRQSIEPCRHLSKAYLQCRMDHELMDKDEMRNLGFEVDDE 84          
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Match: A0A6S8FC41_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FC41_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.490e-14
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   52 PTEKGSFPLDHDNECGGAMEEYMVCLKDNKYISANCEAVKKVYLDCRMKTGLMAEEDMRNLGLR 243
            P  KGSFPLDH  EC  +M+E+++CLK N      C+ + K YL CRM+ GLMA+ED+  LG +
Sbjct:   12 PPLKGSFPLDHKAECKSSMKEFLLCLKTNSNEHHKCQKLSKEYLTCRMQKGLMADEDLDELGFK 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90821.21051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6WM18_MARPO2.770e-1953.73CHCH domain-containing protein n=1 Tax=Marchantia ... [more]
A0A1Y2H9C9_9FUNG1.380e-1747.69CHCH domain-containing protein n=1 Tax=Catenaria a... [more]
A0A5C3R5J8_9AGAR9.270e-1755.56CHCH domain-containing protein n=1 Tax=Pterula gra... [more]
B3SDQ3_TRIAD1.980e-1651.52CHCH domain-containing protein n=2 Tax=Trichoplax ... [more]
A0A1E3PDW6_9ASCO2.340e-1650.00Uncharacterized protein n=1 Tax=Nadsonia fulvescen... [more]
A0A336K641_CULSO4.060e-1652.31CSON012864 protein n=2 Tax=Culicoides sonorensis T... [more]
A0A3S3SME1_9ACAR4.860e-1652.94Succinate dehydrogenase assembly factor 4, mitocho... [more]
UPI000644CAF14.280e-1554.84hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A4P9XMH5_9FUNG1.000e-1443.02CHCH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6S8FC41_9STRA1.490e-1450.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90821contigM-pyrifera_M_contig90821:305..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.0
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog65672.G4TFM0
Preferred nameCOX19
KEGG koko:K18183
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008535,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0017004,GO:0022607,GO:0030001,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033108,GO:0033617,GO:0034622,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0055114,GO:0065003,GO:0070013,GO:0071840
EggNOG free text desc.CHCH domain
EggNOG OGs22AB2@155619,3A8SG@33154,3H5RZ@355688,3P5KE@4751,3V1VJ@5204,KOG3477@1,KOG3477@2759
COG Functional cat.C
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.3508878-CDS-M-pyrifera_M_contig90821:304..5041622816820.3508878-CDS-M-pyrifera_M_contig90821:304..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90821 305..504 +
1692278197.7160594-CDS-M-pyrifera_M_contig90821:304..5041692278197.7160594-CDS-M-pyrifera_M_contig90821:304..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90821 305..504 +
1622816820.365283-CDS-M-pyrifera_M_contig90821:556..6171622816820.365283-CDS-M-pyrifera_M_contig90821:556..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90821 557..617 +
1692278197.7304115-CDS-M-pyrifera_M_contig90821:556..6171692278197.7304115-CDS-M-pyrifera_M_contig90821:556..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90821 557..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90821.21051.1prot_M-pyrifera_M_contig90821.21051.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90821 305..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90821.21051.1

>prot_M-pyrifera_M_contig90821.21051.1 ID=prot_M-pyrifera_M_contig90821.21051.1|Name=mRNA_M-pyrifera_M_contig90821.21051.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
SCGQPFSSHCLEADGWQPTEKGSFPLDHDNECGGAMEEYMVCLKDNKYIS
ANCEAVKKVYLDCRMKTGLMAEEDMRNLGLRDDDEMK
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mRNA from alignment at M-pyrifera_M_contig90821:305..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90821.21051.1 ID=mRNA_M-pyrifera_M_contig90821.21051.1|Name=mRNA_M-pyrifera_M_contig90821.21051.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=313bp|location=Sequence derived from alignment at M-pyrifera_M_contig90821:305..617+ (Macrocystis pyrifera P11B4 male)
TCTTGCGGGCAACCATTCTCATCGCACTGCCTGGAGGCTGACGGCTGGCA ACCAACAGAGAAGGGCAGCTTCCCACTGGACCACGACAATGAGTGTGGCG GTGCTATGGAGGAGTATATGGTGTGCCTCAAGGACAACAAGTACATATCT GCCAACTGCGAGGCAGTGAAGAAGGTCTACCTCGACTGCAGGATGAAGAC GTGCGTTGCTCCAACCTCCGCTGCAGTGAACACAATGGCTGACGCTGCCC AGTGGCCTCATGGCAGAGGAGGACATGAGGAACCTGGGCCTCAGAGACGA CGACGAAATGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90821:305..617+

>mRNA_M-pyrifera_M_contig90821.21051.1 ID=mRNA_M-pyrifera_M_contig90821.21051.1|Name=mRNA_M-pyrifera_M_contig90821.21051.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig90821:305..617+ (Macrocystis pyrifera P11B4 male)
TCTTGCGGGCAACCATTCTCATCGCACTGCCTGGAGGCTGACGGCTGGCA
ACCAACAGAGAAGGGCAGCTTCCCACTGGACCACGACAATGAGTGTGGCG
GTGCTATGGAGGAGTATATGGTGTGCCTCAAGGACAACAAGTACATATCT
GCCAACTGCGAGGCAGTGAAGAAGGTCTACCTCGACTGCAGGATGAAGAC
TCTTGCGGGCAACCATTCTCATCGCACTGCCTGGAGGCTGACGGCTGGCA
ACCAACAGAGAAGGGCAGCTTCCCACTGGACCACGACAATGAGTGTGGCG
GTGCTATGGAGGAGTATATGGTGTGCCTCAAGGACAACAAGTACATATCT
GCCAACTGCGAGGCAGTGAAGAAGGTCTACCTCGACTGCAGGATGAAGAC
TGGCCTCATGGCAGAGGAGGACATGAGGAACCTGGGCCTCAGAGACGACG
ACGAAATGAAGTGGCCTCATGGCAGAGGAGGACATGAGGAACCTGGGCCT
CAGAGACGACGACGAAATGAAG
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