mRNA_M-pyrifera_M_contig90812.21047.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90812.21047.1
Unique NamemRNA_M-pyrifera_M_contig90812.21047.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A7S4MQK3_9EUKA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MQK3_9EUKA)

HSP 1 Score: 178 bits (451), Expect = 2.800e-54
Identity = 88/119 (73.95%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFET------------EAKDQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HLNT IEKGLLHRAFSVFLFNS+ +LLLQQR+AEKITFP YWTNTVCSHPL FE             E ++Q G KRAAIRK+DQELG++ADQ+PIDQF FLT+ILYKAPSDGIWGEHE
Sbjct:   40 HLNTFIEKGLLHRAFSVFLFNSDNELLLQQRSAEKITFPLYWTNTVCSHPLQFEDKEGNVLPNQPEMEDENQYGAKRAAIRKMDQELGISADQLPIDQFQFLTKILYKAPSDGIWGEHE 158
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A1Y2CTN6_9FUNG (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CTN6_9FUNG)

HSP 1 Score: 160 bits (405), Expect = 1.940e-47
Identity = 78/109 (71.56%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYF--ETEAKDQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL T I KGLLHRAFSVFLFNSEGKLLLQQRA EKITFP Y+TNT CSHPL    E E  +Q+G +RAA RKL+ ELG+ A+QVP+D+F FLT+I Y APSDG+WGEHE
Sbjct:   40 HLMTNINKGLLHRAFSVFLFNSEGKLLLQQRADEKITFPGYYTNTCCSHPLAVQDEVEEAEQIGARRAAQRKLEHELGIKAEQVPLDKFQFLTKIQYLAPSDGLWGEHE 148
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A6G1HLK3_9PEZI (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1HLK3_9PEZI)

HSP 1 Score: 162 bits (411), Expect = 3.670e-47
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAKDQL-----GVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL T IEKGLLHRAFSVFLF+ E +LLLQQRA EKITFP+ WTNT CSHPL    E  D L     G KRAAIRKLDQELG+ A+QVP+DQF FLTRI YKAPSDG WGEHE
Sbjct:  138 HLMTNIEKGLLHRAFSVFLFDKENRLLLQQRATEKITFPDMWTNTCCSHPLGIPGETGDGLAESILGAKRAAIRKLDQELGIKAEQVPLDQFKFLTRIHYKAPSDGKWGEHE 249
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: UPI000719CA39 (isopentenyl-diphosphate Delta-isomerase 1-like isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CA39)

HSP 1 Score: 159 bits (402), Expect = 1.190e-46
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAK--DQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL   I KGLLHRAFSVFLFNS+ +LLLQQR+ EKITFP YWTNT CSHPL FE E    D LGVKRAA RKL+ ELG++ DQVP++ F +LTRI YKAPSDG WGEHE
Sbjct:   66 HLMENINKGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGYWTNTCCSHPLNFEAELALDDNLGVKRAAQRKLEHELGISQDQVPLEAFQYLTRIHYKAPSDGKWGEHE 174
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A1E3Q0R4_LIPST (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q0R4_LIPST)

HSP 1 Score: 159 bits (402), Expect = 1.360e-46
Identity = 80/114 (70.18%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:   10 TGHLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAKDQL-----GVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            T HL + I  GLLHRAFSVFLFN E KLLLQQRA EKITFP  WTNT CSHPL   +E    L     GVKRAA RKLDQELG+ +DQVP+D+F+FLTRI YKAPSDG+WGEHE
Sbjct:   70 TCHLMSNINNGLLHRAFSVFLFNEENKLLLQQRADEKITFPGMWTNTCCSHPLAIPSEIGYDLPTSIMGVKRAAQRKLDQELGIASDQVPLDKFHFLTRIHYKAPSDGVWGEHE 183
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: B8MET0_TALSN (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8MET0_TALSN)

HSP 1 Score: 157 bits (396), Expect = 2.220e-46
Identity = 78/112 (69.64%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAKDQL-----GVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL T I +GLLHRAFSVFLF+S+ +LLLQQRAAEKITFP+ WTNT CSHPL    E   +L     GVKRAA+RKLDQELG+ A+QVP+D+F FLTRI Y APSDG WGEHE
Sbjct:   82 HLMTNISRGLLHRAFSVFLFDSQNRLLLQQRAAEKITFPDLWTNTCCSHPLGIAGETGAELSAAVEGVKRAAVRKLDQELGIKAEQVPLDKFKFLTRIHYLAPSDGKWGEHE 193
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A507E4Y8_9FUNG (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E4Y8_9FUNG)

HSP 1 Score: 157 bits (398), Expect = 2.360e-46
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYF--ETEAKDQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL T I  GLLHRAFSVF+FN+EG LLLQQRA EKITFP Y+TNT CSHPL    ETE  DQ+G +RAA RKL+ ELG+ A+QVP+DQ  FLTRI Y APSDG+WGEHE
Sbjct:   39 HLMTNINNGLLHRAFSVFIFNNEGNLLLQQRADEKITFPGYFTNTCCSHPLMVKDETEEGDQIGARRAAQRKLEHELGIPAEQVPLDQLEFLTRIHYLAPSDGLWGEHE 147
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A507FDF4_9FUNG (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDF4_9FUNG)

HSP 1 Score: 159 bits (401), Expect = 2.980e-46
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAKD--QLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL T+I +GLLHRAFSVF+FNSEGKLLLQQRA EKITFP YWTNT CSHPL  E E ++  Q+G +RAA RKLD ELG+ A Q+P+++  FLT+I Y APSDGIWGEHE
Sbjct:   88 HLMTKINEGLLHRAFSVFIFNSEGKLLLQQRADEKITFPGYWTNTCCSHPLAVEDEVEEVNQMGARRAAQRKLDHELGIKAAQIPLEKLEFLTKIHYLAPSDGIWGEHE 196
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A2J6PHW0_9HELO (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6PHW0_9HELO)

HSP 1 Score: 157 bits (397), Expect = 3.160e-46
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   13 GHLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYFETEAKDQL-----GVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            GHL T IEKGLLHRAFSVFLFNS+ +LLLQQRA EKITFP+ WTNT CSHPL    E   +L     GVKRAA RKLD ELG+ A QVPI+ F FLTRI YKAPSDG WGEHE
Sbjct:   81 GHLMTNIEKGLLHRAFSVFLFNSKNELLLQQRATEKITFPDMWTNTCCSHPLGIPGEGGVELAEAVAGVKRAAQRKLDHELGIKAAQVPIENFKFLTRIHYKAPSDGKWGEHE 193
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BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Match: A0A0D2UIZ9_CAPO3 (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UIZ9_CAPO3)

HSP 1 Score: 157 bits (396), Expect = 6.120e-46
Identity = 77/109 (70.64%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:   16 HLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNTVCSHPLYF--ETEAKDQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILYKAPSDGIWGEHE 336
            HL   I KG+LHRAFSVFLFNS+G+LLLQQRA EKITFP ++TNT CSHPLY   E E    +GVKRAA RKL+QELG+  D+VP+D FN+LTRI YKAPSDG WGEHE
Sbjct:   51 HLMENINKGMLHRAFSVFLFNSKGELLLQQRADEKITFPGHYTNTCCSHPLYIAGELEEAGAVGVKRAAQRKLEQELGIKPDEVPLDAFNYLTRIHYKAPSDGKWGEHE 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90812.21047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MQK3_9EUKA2.800e-5473.95Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Va... [more]
A0A1Y2CTN6_9FUNG1.940e-4771.56Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rh... [more]
A0A6G1HLK3_9PEZI3.670e-4773.21Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Tr... [more]
UPI000719CA391.190e-4671.56isopentenyl-diphosphate Delta-isomerase 1-like iso... [more]
A0A1E3Q0R4_LIPST1.360e-4670.18Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Li... [more]
B8MET0_TALSN2.220e-4669.64Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ta... [more]
A0A507E4Y8_9FUNG2.360e-4670.64Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Po... [more]
A0A507FDF4_9FUNG2.980e-4669.72Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ch... [more]
A0A2J6PHW0_9HELO3.160e-4671.68Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Hy... [more]
A0A0D2UIZ9_CAPO36.120e-4670.64Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90812contigM-pyrifera_M_contig90812:135..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue2e-39
Seed eggNOG ortholog529818.AMSG_08047T0
Preferred nameIDI1
KEGG rclassRC00455
KEGG koko:K01823,ko:K21773
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04218,map00900,map01100,map01110,map01130,map04218
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0003006,GO:0003674,GO:0003824,GO:0004452,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010894,GO:0014070,GO:0016114,GO:0016125,GO:0016126,GO:0016853,GO:0016860,GO:0016863,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0022414,GO:0030145,GO:0032501,GO:0032502,GO:0035634,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0045541,GO:0045833,GO:0045939,GO:0046165,GO:0046490,GO:0046872,GO:0046890,GO:0046914,GO:0048367,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050810,GO:0050896,GO:0051055,GO:0061458,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:0090181,GO:0090206,GO:0090407,GO:0090567,GO:0106118,GO:0106119,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930,GO:1902931
EggNOG free text desc.isopentenyl-diphosphate delta-isomerase activity
EggNOG OGsCOG1443@1,KOG0142@2759
EC5.3.3.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.1357968-CDS-M-pyrifera_M_contig90812:134..3181622816820.1357968-CDS-M-pyrifera_M_contig90812:134..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90812 135..318 +
1692278197.5640113-CDS-M-pyrifera_M_contig90812:134..3181692278197.5640113-CDS-M-pyrifera_M_contig90812:134..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90812 135..318 +
1622816820.146679-CDS-M-pyrifera_M_contig90812:488..6401622816820.146679-CDS-M-pyrifera_M_contig90812:488..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90812 489..640 +
1692278197.582245-CDS-M-pyrifera_M_contig90812:488..6401692278197.582245-CDS-M-pyrifera_M_contig90812:488..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90812 489..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90812.21047.1prot_M-pyrifera_M_contig90812.21047.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90812 135..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90812.21047.1

>prot_M-pyrifera_M_contig90812.21047.1 ID=prot_M-pyrifera_M_contig90812.21047.1|Name=mRNA_M-pyrifera_M_contig90812.21047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
RDCTGHLNTEIEKGLLHRAFSVFLFNSEGKLLLQQRAAEKITFPNYWTNT
VCSHPLYFETEAKDQLGVKRAAIRKLDQELGVTADQVPIDQFNFLTRILY
KAPSDGIWGEHE
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mRNA from alignment at M-pyrifera_M_contig90812:135..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90812.21047.1 ID=mRNA_M-pyrifera_M_contig90812.21047.1|Name=mRNA_M-pyrifera_M_contig90812.21047.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=506bp|location=Sequence derived from alignment at M-pyrifera_M_contig90812:135..640+ (Macrocystis pyrifera P11B4 male)
CGGGACTGTACAGGCCACCTGAACACAGAGATCGAGAAGGGCCTTCTGCA
CCGCGCCTTCTCGGTGTTCCTGTTCAACAGCGAGGGAAAGCTTCTCCTGC
AGCAGCGCGCTGCGGAGAAGATCACCTTCCCCAACTACTGGACCAACACG
GTGTGCTCTCACCCACTCTACTTCGAGACGGAGGGTATGCCCATCCTTGC
ACTGCACTGGCGCAAGACACACACACGCCTTGTGCTTTGTCACTTGCAGT
TGTCTCCCCATGAGAGGACCCTTTTGTGCTTCTCTTTTATCTTGTAGGCC
ACGTGCTGACCACTGCAGATGGCAAGGCTGCTGACGAGCAGCCCGAGTAC
GAAGCTAAGGACCAGTTGGGAGTGAAGAGGGCCGCCATCCGCAAGCTGGA
CCAGGAGCTTGGTGTCACTGCCGACCAGGTGCCCATTGACCAGTTCAACT
TCCTCACTCGCATCCTGTACAAGGCGCCATCTGACGGCATCTGGGGAGAG
CACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90812:135..640+

>mRNA_M-pyrifera_M_contig90812.21047.1 ID=mRNA_M-pyrifera_M_contig90812.21047.1|Name=mRNA_M-pyrifera_M_contig90812.21047.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig90812:135..640+ (Macrocystis pyrifera P11B4 male)
CGGGACTGTACAGGCCACCTGAACACAGAGATCGAGAAGGGCCTTCTGCA
CCGCGCCTTCTCGGTGTTCCTGTTCAACAGCGAGGGAAAGCTTCTCCTGC
AGCAGCGCGCTGCGGAGAAGATCACCTTCCCCAACTACTGGACCAACACG
GTGTGCTCTCACCCACTCTACTTCGAGACGGAGGCGGGACTGTACAGGCC
ACCTGAACACAGAGATCGAGAAGGGCCTTCTGCACCGCGCCTTCTCGGTG
TTCCTGTTCAACAGCGAGGGAAAGCTTCTCCTGCAGCAGCGCGCTGCGGA
GAAGATCACCTTCCCCAACTACTGGACCAACACGGTGTGCTCTCACCCAC
TCTACTTCGAGACGGAGGCTAAGGACCAGTTGGGAGTGAAGAGGGCCGCC
ATCCGCAAGCTGGACCAGGAGCTTGGTGTCACTGCCGACCAGGTGCCCAT
TGACCAGTTCAACTTCCTCACTCGCATCCTGTACAAGGCGCCATCTGACG
GCATCTGGGGAGAGCACGAACTAAGGACCAGTTGGGAGTGAAGAGGGCCG
CCATCCGCAAGCTGGACCAGGAGCTTGGTGTCACTGCCGACCAGGTGCCC
ATTGACCAGTTCAACTTCCTCACTCGCATCCTGTACAAGGCGCCATCTGA
CGGCATCTGGGGAGAGCACGAA
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