mRNA_M-pyrifera_M_contig90809.21045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90809.21045.1
Unique NamemRNA_M-pyrifera_M_contig90809.21045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A6A5KZH4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KZH4_LUPAL)

HSP 1 Score: 146 bits (368), Expect = 1.260e-41
Identity = 79/109 (72.48%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    7 PDNACTLRITAAAGTELAGAYSPGTVNLGRTPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPI 333
            PDNACTLRITAAAGTELAGAYS  T +      F+P QK FTTHRAV  HA WL QA  HC  FLTAASRRSL RVSVPVWGI LS PL II LVS YLTN LI+R PI
Sbjct:   35 PDNACTLRITAAAGTELAGAYSYSTFSFPHVERFIPVQKKFTTHRAVVLHAGWLDQALTHCPIFLTAASRRSLVRVSVPVWGITLSGPLKIIDLVSRYLTNYLILRVPI 143          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A6A5L1D6_LUPAL (Uncharacterized protein n=3 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1D6_LUPAL)

HSP 1 Score: 133 bits (335), Expect = 2.810e-36
Identity = 70/97 (72.16%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    7 PDNACTLRITAAAGTELAGAYSPGTVNLGRTPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSH 297
            PDNACTLRITAAAGTELAGAYS  T +      F+P QK FTTHRAV  HA WL QA  HC  FLTAASRRSL RVSVPVWGI LS PL II LV+H
Sbjct:   35 PDNACTLRITAAAGTELAGAYSYSTFSFPHVERFIPVQKKFTTHRAVVLHAGWLDQALTHCPIFLTAASRRSLVRVSVPVWGITLSGPLKIIDLVAH 131          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: S4WB24_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium FPPP_33K14 TaxID=1343846 RepID=S4WB24_9BACT)

HSP 1 Score: 131 bits (329), Expect = 6.380e-36
Identity = 81/135 (60.00%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTVNLGR--TPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPIFT-RPKP-LTTMAMRPRCIMRY 393
            MIPDNA T RITAAAGT+LAGA+  GTV       P F          R+   HAA LRQAFAHCA+F TAA RR LGR+S+PVW IILSD L IIALV HY TN LI RRPI    PKP LT +  R  CI+RY
Sbjct:    1 MIPDNASTPRITAAAGTKLAGAFLRGTVKNENYLPPNFSSLTTDLYAPRSFIDHAALLRQAFAHCAKFPTAAPRRGLGRISIPVWLIILSDQLPIIALVGHYPTNKLIGRRPILKCEPKPALTIVPRRIYCIIRY 135          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A484L7Q7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L7Q7_9ASTE)

HSP 1 Score: 120 bits (302), Expect = 6.390e-32
Identity = 72/106 (67.92%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTVNLGRTPG---FLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN 309
            +IPDNAC L ITAAAGTELA AYSP TV +  +PG     PW        A + HAA LRQAFAHC +FLTAASRRSLGRVSVPVW IILSD L IIALVS+ LTN
Sbjct:   33 IIPDNACILCITAAAGTELADAYSPDTV-IASSPGKEVHDPW--------AFYLHAALLRQAFAHCGKFLTAASRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN 129          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A5N6PTZ5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PTZ5_9ASTR)

HSP 1 Score: 114 bits (285), Expect = 3.310e-29
Identity = 69/106 (65.09%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTVNLGRTPG---FLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN 309
            +IPDNAC L ITAAAGTELA AYSP TV +  TPG     PW        A +  AA LRQAFA+C +F  AASRRSLGRVSVPVW IILSD L IIALVS+Y+TN
Sbjct:   45 IIPDNACILCITAAAGTELADAYSPDTV-IASTPGKEVHDPW--------AFYLQAALLRQAFAYCGKFPIAASRRSLGRVSVPVWLIILSDQLLIIALVSYYVTN 141          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A563BF88_9BACT (Uncharacterized protein n=1 Tax=TM7 phylum sp. oral taxon 351 TaxID=713053 RepID=A0A563BF88_9BACT)

HSP 1 Score: 113 bits (283), Expect = 7.220e-29
Identity = 73/149 (48.99%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  166 LRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPIFTRPKPLTTMAMRPRCIMRY*HHFRSVIPQAKAGYLRVTHPSAS------------------LQEKQAFPFSFDLHVLSPPPAFVLSQDQTLH 558
            L QAFAHC RF TAASRRSLGRVSVPVW IILS+ LTI+ LVS YLTN LIVR+P    PK +  +  R   ++    +  +  P     + RVT PSA+                   QE        DLHVL  PPAF+LSQDQTLH
Sbjct:    2 LHQAFAHCERFPTAASRRSLGRVSVPVWMIILSNHLTIVDLVSLYLTNYLIVRKPF---PKRINALIQRSHAVLA---NLSTSYPSLWGMFSRVTQPSAARHQLHSSLESYHSHNSQVCQENGEAMLPLDLHVLGMPPAFILSQDQTLH 144          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A8H8DIQ4_9FUNG (Uncharacterized protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DIQ4_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 9.740e-29
Identity = 79/154 (51.30%), Postives = 87/154 (56.49%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTVNLGRTPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPIFTRPKPLTTMAMRPRCIMRY*HHFRSVIPQAKAGYLRVTHPSA 462
            +IPDNA TLRITAAAGTELAGA S GTV    T         +T  + V  HAA LRQ   HCA F TAASRRSLGR+SVP+W  ILSD L +  LV    TN LI R  +   P+      M P   MRY       IPQ  A   RVTHP A
Sbjct:    9 VIPDNARTLRITAAAGTELAGASSLGTVRRVETRCSSRATGVYTP-KCVIPHAASLRQPCGHCAIFPTAASRRSLGRISVPMWLAILSDQLPVNGLVGRDPTNYLIGRE-LLVHPRRFLLQVMPPEERMRYYPAVGPAIPQCTADCSRVTHPFA 160          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A2P5W7G6_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W7G6_GOSBA)

HSP 1 Score: 119 bits (299), Expect = 1.070e-28
Identity = 87/186 (46.77%), Postives = 97/186 (52.15%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTVNLGRTPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPIFTRPKPLTTMAMRPRCIMRY*HHFRSVIPQAKAGYLRVTHPSASLQEKQAFPFSFDLHVLSPPPAFVLSQDQTLH 558
            +IPDNAC L IT AAGTELA AYSP TV +  +PG     K      A + +AA LRQAFAHC +F  AASRRSLGRVSVPVW IILSD L IIALV               TR  P          +  + HHF S                             DLHVLS PPAF+LSQD+TLH
Sbjct:  232 IIPDNACILCITTAAGTELADAYSPDTV-IASSPG-----KEVHDPLAFYLYAALLRQAFAHCGKFPIAASRRSLGRVSVPVWLIILSDQLLIIALV--------------LTRYSP----------VRHWKHHFPS-----------------------------DLHVLSMPPAFILSQDRTLH 358          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: A0A8J5F7R0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7R0_ZINOF)

HSP 1 Score: 112 bits (280), Expect = 1.720e-28
Identity = 68/105 (64.76%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 MIPDNACTLRITAAAGTELAGAYSPGTV--NLGRTPGFLPWQKPFTTHRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN 309
            +IPDNAC L +TAAAGTELA AYS  TV  +  R     PW        A + HAA LRQAFAHC +F TAASRRSLGRVSVPVW IILSD L IIALVS+ LTN
Sbjct:   42 IIPDNACILCLTAAAGTELADAYSSDTVIASSPRKEVHDPW--------AFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVSYCLTN 138          
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Match: S4WAA0_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 122006-I05 TaxID=1343837 RepID=S4WAA0_9BACT)

HSP 1 Score: 112 bits (280), Expect = 3.380e-28
Identity = 77/149 (51.68%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  133 THRAVFRHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHYLTN*LIVRRPIFTRPKPLTTMAMRPRCIMRY*HHFRSVIPQAKAGYLR----VTHPSASLQEKQAFPFS---FDLHVLSPPPAFVLSQDQTLH 558
            T ++   HAA LRQ F HCARF TAASRRSLGR+S+PVW IILSD L IIALVS YLTN LI  RPI  +  P T +   P+          S I  A AG  +    VT+   +      FP      DLHVL  PPA VLSQDQTLH
Sbjct:   19 TPKSFIGHAALLRQGFPHCARFPTAASRRSLGRISIPVWLIILSDQLPIIALVSFYLTNKLIGHRPI-QKHDPKTALTTYPKGFAAL-----SGISPAFAGLSQSLGQVTYALLTRPPVYLFPEGNVLLDLHVLGTPPALVLSQDQTLH 161          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90809.21045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5KZH4_LUPAL1.260e-4172.48Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L1D6_LUPAL2.810e-3672.16Uncharacterized protein n=3 Tax=Lupinus albus TaxI... [more]
S4WB24_9BACT6.380e-3660.00Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A484L7Q7_9ASTE6.390e-3267.92Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A5N6PTZ5_9ASTR3.310e-2965.09Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A563BF88_9BACT7.220e-2948.99Uncharacterized protein n=1 Tax=TM7 phylum sp. ora... [more]
A0A8H8DIQ4_9FUNG9.740e-2951.30Uncharacterized protein n=1 Tax=Olpidium bornovanu... [more]
A0A2P5W7G6_GOSBA1.070e-2846.77Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
A0A8J5F7R0_ZINOF1.720e-2864.76Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
S4WAA0_9BACT3.380e-2851.68Uncharacterized protein n=1 Tax=uncultured bacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90809contigM-pyrifera_M_contig90809:15..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog1121930.AQXG01000012_gene3179
Hectar predicted targeting categoryother localisation
EggNOG OGs1IZKG@117747,2EH3B@1,33AVB@2,4NXP5@976
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size560
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.036654-UTR-M-pyrifera_M_contig90809:14..2621622816820.036654-UTR-M-pyrifera_M_contig90809:14..262Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90809 15..262 -
1692278197.5019832-UTR-M-pyrifera_M_contig90809:14..2621692278197.5019832-UTR-M-pyrifera_M_contig90809:14..262Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90809 15..262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.0524642-CDS-M-pyrifera_M_contig90809:262..5741622816820.0524642-CDS-M-pyrifera_M_contig90809:262..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90809 263..574 -
1692278197.5188806-CDS-M-pyrifera_M_contig90809:262..5741692278197.5188806-CDS-M-pyrifera_M_contig90809:262..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90809 263..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90809.21045.1prot_M-pyrifera_M_contig90809.21045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90809 263..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90809.21045.1

>prot_M-pyrifera_M_contig90809.21045.1 ID=prot_M-pyrifera_M_contig90809.21045.1|Name=mRNA_M-pyrifera_M_contig90809.21045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MIPDNACTLRITAAAGTELAGAYSPGTVNLGRTPGFLPWQKPFTTHRAVF
RHAAWLRQAFAHCARFLTAASRRSLGRVSVPVWGIILSDPLTIIALVSHY
LTN*
back to top

mRNA from alignment at M-pyrifera_M_contig90809:15..574-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90809.21045.1 ID=mRNA_M-pyrifera_M_contig90809.21045.1|Name=mRNA_M-pyrifera_M_contig90809.21045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=560bp|location=Sequence derived from alignment at M-pyrifera_M_contig90809:15..574- (Macrocystis pyrifera P11B4 male)
ATGATTCCGGACAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCAC GGAGTTAGCCGGTGCTTATTCACCAGGTACCGTCAATCTAGGGCGAACCC CAGGCTTTCTTCCCTGGCAAAAGCCGTTTACAACCCATAGGGCCGTCTTC CGGCACGCGGCGTGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCT CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGG GGATCATCCTCTCAGACCCCCTAACTATCATCGCCTTGGTAAGCCATTAC CTTACCAACTAGCTAATAGTACGCAGACCCATCTTTACCCGGCCGAAACC TTTAACAACTATGGCCATGCGGCCCCGCTGCATTATGCGGTATTAGCACC ACTTTCGCAGTGTTATCCCCCAGGCAAAGGCAGGTTATCTACGCGTTACT CACCCGTCCGCCAGTCTCCAGGAAAAGCAAGCTTTTCCCTTCTCCTTCGA CTTGCATGTGTTAAGCCCGCCGCCAGCGTTCGTCCTGAGCCAGGATCAAA CTCTCCATTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90809:15..574-

>mRNA_M-pyrifera_M_contig90809.21045.1 ID=mRNA_M-pyrifera_M_contig90809.21045.1|Name=mRNA_M-pyrifera_M_contig90809.21045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig90809:15..574- (Macrocystis pyrifera P11B4 male)
ATGATTCCGGACAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCAC
GGAGTTAGCCGGTGCTTATTCACCAGGTACCGTCAATCTAGGGCGAACCC
CAGGCTTTCTTCCCTGGCAAAAGCCGTTTACAACCCATAGGGCCGTCTTC
CGGCACGCGGCGTGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCT
CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGG
GGATCATCCTCTCAGACCCCCTAACTATCATCGCCTTGGTAAGCCATTAC
CTTACCAACTAGATGATTCCGGACAACGCTTGCACCCTCCGTATTACCGC
GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCACCAGGTACCGTCAATC
TAGGGCGAACCCCAGGCTTTCTTCCCTGGCAAAAGCCGTTTACAACCCAT
AGGGCCGTCTTCCGGCACGCGGCGTGGCTGCGTCAGGCTTTCGCCCATTG
CGCAAGATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG
TCCCAGTGTGGGGGATCATCCTCTCAGACCCCCTAACTATCATCGCCTTG
GTAAGCCATTACCTTACCAACTAG
back to top