mRNA_M-pyrifera_M_contig90770.21041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90770.21041.1
Unique NamemRNA_M-pyrifera_M_contig90770.21041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A225X2F4_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2F4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.210e-8
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   16 VELGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGM-----VRVAWLYNGKVNVYRYGERG 183
            + +G LV R  DW + ++DGGPGS+GIV EI+  G      +RV W  NG  NVYRYG  G
Sbjct: 3923 LSIGDLVIRSPDWEYSEEDGGPGSIGIVQEIIGWGSHGGKGLRVRWQENGFENVYRYGVNG 3983          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A6G0X4Z1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4Z1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.170e-8
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 AVVELGWLVCRGKDWRHRDQDGGPGSLGIVAEILS----RGM-VRVAWLYNGKVNVYRYGERGH-DLAVVSS 207
            + +  G  V RG+DW + D+DGGPG +G V E+++     GM V+V W YN   N+YRYG  G+ D+A  SS
Sbjct: 3369 STLNPGDSVVRGEDWIYGDEDGGPGHVGHVVEVVAWKQRSGMGVKVKWSYNNHENIYRYGYNGYFDVAQTSS 3440          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A8B8E166_CRAVI (uncharacterized protein LOC111130662 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E166_CRAVI)

HSP 1 Score: 59.3 bits (142), Expect = 9.540e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 EEHAVVELGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH 186
            +    +E+G LV RG DWR  + DGGPGS+G+V  + S   V V W  +G++  Y+YG++G+
Sbjct:  225 QHDQFIEVGCLVRRGNDWRDNNNDGGPGSIGVVFRVHSDATVGVRWP-SGQLRRYKYGKQGY 285          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: UPI00148AA56D (uncharacterized protein LOC105339602 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AA56D)

HSP 1 Score: 57.8 bits (138), Expect = 3.510e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 EEHAVVELGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH 186
            +    +E+G LV RG +W   DQDGGPGS+G+V  + S   V V W  NG +  Y+YG++G+
Sbjct:  938 QHDQFIEVGCLVKRGDNWGDDDQDGGPGSVGVVFRVHSDATVGVRWP-NGLLRRYKYGKQGY 998          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A8I6RJ91_CIMLE (E3 ubiquitin-protein ligase n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RJ91_CIMLE)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 32/74 (43.24%), Postives = 37/74 (50.00%), Query Frame = 1
Query:   22 LGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH-DLAVVSSDTDAADIPAIP 240
            +G  VCRG DW+ RDQDG P   G V   L  G + VAW  NG  N YR G  G  DL + S    +   P  P
Sbjct: 1265 IGARVCRGIDWKWRDQDGNPPGQGTVTGELHNGWIDVAW-DNGGSNSYRMGAEGKFDLKLASEPDTSGTKPTSP 1337          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A8I6TFT5_CIMLE (E3 ubiquitin-protein ligase n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TFT5_CIMLE)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 32/74 (43.24%), Postives = 37/74 (50.00%), Query Frame = 1
Query:   22 LGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH-DLAVVSSDTDAADIPAIP 240
            +G  VCRG DW+ RDQDG P   G V   L  G + VAW  NG  N YR G  G  DL + S    +   P  P
Sbjct: 1265 IGARVCRGIDWKWRDQDGNPPGQGTVTGELHNGWIDVAW-DNGGSNSYRMGAEGKFDLKLASEPDTSGTKPTSP 1337          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A8I6RPB9_CIMLE (E3 ubiquitin-protein ligase n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RPB9_CIMLE)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 32/74 (43.24%), Postives = 37/74 (50.00%), Query Frame = 1
Query:   22 LGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH-DLAVVSSDTDAADIPAIP 240
            +G  VCRG DW+ RDQDG P   G V   L  G + VAW  NG  N YR G  G  DL + S    +   P  P
Sbjct: 1246 IGARVCRGIDWKWRDQDGNPPGQGTVTGELHNGWIDVAW-DNGGSNSYRMGAEGKFDLKLASEPDTSGTKPTSP 1318          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A8I6RNW0_CIMLE (E3 ubiquitin-protein ligase n=13 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RNW0_CIMLE)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 32/74 (43.24%), Postives = 37/74 (50.00%), Query Frame = 1
Query:   22 LGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH-DLAVVSSDTDAADIPAIP 240
            +G  VCRG DW+ RDQDG P   G V   L  G + VAW  NG  N YR G  G  DL + S    +   P  P
Sbjct: 1265 IGARVCRGIDWKWRDQDGNPPGQGTVTGELHNGWIDVAW-DNGGSNSYRMGAEGKFDLKLASEPDTSGTKPTSP 1337          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: A0A7S4UG59_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG59_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-6
Identity = 33/73 (45.21%), Postives = 36/73 (49.32%), Query Frame = 1
Query:   25 GWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNGKVNVYRYGERGH-DLAVVSSDTDAADIPAIP 240
            G  V RG DWR  DQDGGPGS+G+V   L  G   V W  NG  N YR G     DL  V     A   P +P
Sbjct:  179 GTRVRRGPDWRWGDQDGGPGSVGVVMGELRDGWCTVRWP-NGYTNGYRVGHNARFDLQAVDRQPPAPARPPVP 250          
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Match: UPI001EAFF197 (uncharacterized protein LOC124131395 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFF197)

HSP 1 Score: 54.7 bits (130), Expect = 4.040e-6
Identity = 26/56 (46.43%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   13 VVELGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGM-VRVAWLYNGKVNVYRYGE 177
            ++++G  V RG DW H++QDGGPGS G+V  +  RG+ V+V W  +G+++ YR+GE
Sbjct:  626 LIDVGVQVERGPDWSHKNQDGGPGSCGVVIRV--RGLRVKVLW-GSGEIHEYRFGE 678          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90770.21041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A225X2F4_9STRA1.210e-849.18HECT E3 ubiquitin ligase n=1 Tax=Phytophthora mega... [more]
A0A6G0X4Z1_9STRA4.170e-844.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8B8E166_CRAVI9.540e-841.94uncharacterized protein LOC111130662 n=1 Tax=Crass... [more]
UPI00148AA56D3.510e-743.55uncharacterized protein LOC105339602 n=1 Tax=Crass... [more]
A0A8I6RJ91_CIMLE1.700e-643.24E3 ubiquitin-protein ligase n=1 Tax=Cimex lectular... [more]
A0A8I6TFT5_CIMLE1.700e-643.24E3 ubiquitin-protein ligase n=1 Tax=Cimex lectular... [more]
A0A8I6RPB9_CIMLE1.700e-643.24E3 ubiquitin-protein ligase n=1 Tax=Cimex lectular... [more]
A0A8I6RNW0_CIMLE1.700e-643.24E3 ubiquitin-protein ligase n=13 Tax=Cimex lectula... [more]
A0A7S4UG59_9DINO1.980e-645.21Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
UPI001EAFF1974.040e-646.43uncharacterized protein LOC124131395 n=2 Tax=Halio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90770contigM-pyrifera_M_contig90770:399..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog46681.XP_001735543.1
KEGG rclassRC00017
KEGG koko:K05288,ko:K14802,ko:K17849
KEGG TC3.A.3.8
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031461,GO:0031625,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0051171,GO:0051246,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.Mib_herc2
EggNOG OGs3XCZR@554915,COG5021@1,COG5184@1,KOG1426@2759,KOG4276@2759
EC2.3.2.26,3.6.3.1
COG Functional cat.DZ
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko04121
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.862884-CDS-M-pyrifera_M_contig90770:398..7731622816819.862884-CDS-M-pyrifera_M_contig90770:398..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90770 399..773 +
1692278197.3955286-CDS-M-pyrifera_M_contig90770:398..7731692278197.3955286-CDS-M-pyrifera_M_contig90770:398..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90770 399..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90770.21041.1prot_M-pyrifera_M_contig90770.21041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90770 399..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90770.21041.1

>prot_M-pyrifera_M_contig90770.21041.1 ID=prot_M-pyrifera_M_contig90770.21041.1|Name=mRNA_M-pyrifera_M_contig90770.21041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
EEHAVVELGWLVCRGKDWRHRDQDGGPGSLGIVAEILSRGMVRVAWLYNG
KVNVYRYGERGHDLAVVSSDTDAADIPAIPKGAIVVRNWDGGPYASRLKD
QDGGKYRPGVVLDTTMAGGWVKVGW
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mRNA from alignment at M-pyrifera_M_contig90770:399..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90770.21041.1 ID=mRNA_M-pyrifera_M_contig90770.21041.1|Name=mRNA_M-pyrifera_M_contig90770.21041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig90770:399..773+ (Macrocystis pyrifera P11B4 male)
GAGGAACATGCTGTGGTGGAACTAGGATGGCTTGTGTGTCGAGGCAAGGA TTGGAGACATCGTGATCAGGATGGAGGTCCTGGGAGTTTGGGTATTGTAG CAGAGATCTTGTCTCGTGGAATGGTGAGGGTCGCGTGGTTGTACAATGGA AAGGTGAATGTGTACCGCTATGGAGAACGTGGCCATGATTTGGCGGTGGT GAGTAGCGACACCGATGCTGCAGATATTCCAGCGATCCCTAAAGGTGCCA TTGTGGTACGAAATTGGGATGGAGGACCATATGCTTCTCGTTTGAAGGAC CAAGATGGTGGAAAGTATCGCCCAGGAGTGGTGTTGGACACAACAATGGC GGGGGGATGGGTGAAGGTGGGTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90770:399..773+

>mRNA_M-pyrifera_M_contig90770.21041.1 ID=mRNA_M-pyrifera_M_contig90770.21041.1|Name=mRNA_M-pyrifera_M_contig90770.21041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig90770:399..773+ (Macrocystis pyrifera P11B4 male)
GAGGAACATGCTGTGGTGGAACTAGGATGGCTTGTGTGTCGAGGCAAGGA
TTGGAGACATCGTGATCAGGATGGAGGTCCTGGGAGTTTGGGTATTGTAG
CAGAGATCTTGTCTCGTGGAATGGTGAGGGTCGCGTGGTTGTACAATGGA
AAGGTGAATGTGTACCGCTATGGAGAACGTGGCCATGATTTGGCGGTGGT
GAGTAGCGACACCGATGCTGCAGATATTCCAGCGATCCCTAAAGGTGCCA
TTGTGGTACGAAATTGGGATGGAGGACCATATGCTTCTCGTTTGAAGGAC
CAAGATGGTGGAAAGTATCGCCCAGGAGTGGTGTTGGACACAACAATGGC
GGGGGGATGGGTGAAGGTGGGTTGGGAGGAACATGCTGTGGTGGAACTAG
GATGGCTTGTGTGTCGAGGCAAGGATTGGAGACATCGTGATCAGGATGGA
GGTCCTGGGAGTTTGGGTATTGTAGCAGAGATCTTGTCTCGTGGAATGGT
GAGGGTCGCGTGGTTGTACAATGGAAAGGTGAATGTGTACCGCTATGGAG
AACGTGGCCATGATTTGGCGGTGGTGAGTAGCGACACCGATGCTGCAGAT
ATTCCAGCGATCCCTAAAGGTGCCATTGTGGTACGAAATTGGGATGGAGG
ACCATATGCTTCTCGTTTGAAGGACCAAGATGGTGGAAAGTATCGCCCAG
GAGTGGTGTTGGACACAACAATGGCGGGGGGATGGGTGAAGGTGGGTTGG
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