mRNA_M-pyrifera_M_contig90768.21039.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90768.21039.1
Unique NamemRNA_M-pyrifera_M_contig90768.21039.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: UPI0010F725BA (protein kish-A isoform X1 n=1 Tax=Monodon monoceros TaxID=40151 RepID=UPI0010F725BA)

HSP 1 Score: 89.0 bits (219), Expect = 2.410e-21
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    4 FVGLQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            F G QSAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ C+ MA  ILF++
Sbjct:   20 FGGWQSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDRNKTGLLGIFWKCARIGERKSPYVAVCCIVMAFSILFIQ 95          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A7K6KL64_9PASE (Protein kish (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K6KL64_9PASE)

HSP 1 Score: 87.8 bits (216), Expect = 3.680e-21
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   16 QSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            QSAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:    1 QSAIFNFQSLLTVILLLICTCAYIR---SLAP--NLLDKNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFVQ 72          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A7K8THE4_9AVES (Protein kish (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7K8THE4_9AVES)

HSP 1 Score: 87.8 bits (216), Expect = 3.680e-21
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   16 QSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            QSAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:    1 QSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFCILFVQ 72          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A8B9FJ21_9PSIT (Protein kish n=2 Tax=Neognathae TaxID=8825 RepID=A0A8B9FJ21_9PSIT)

HSP 1 Score: 87.4 bits (215), Expect = 6.480e-21
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   13 LQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            L+SAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:    8 LRSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFTILFVQ 80          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A4X1T6F5_PIG (Protein kish n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A4X1T6F5_PIG)

HSP 1 Score: 87.4 bits (215), Expect = 8.990e-21
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 GFVGLQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            G +  +SAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILF++
Sbjct:   16 GDISKESAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDRNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFIQ 92          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: UPI00188584EB (protein kish-A isoform X2 n=1 Tax=Peromyscus leucopus TaxID=10041 RepID=UPI00188584EB)

HSP 1 Score: 87.4 bits (215), Expect = 9.500e-21
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   10 GLQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            G  SAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ C+ MA  ILF++
Sbjct:   21 GFHSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDRNKTGLLGIFWKCARIGERKSPYVAVCCIVMAFSILFIQ 94          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A852JV59_SPIPA (Protein kish (Fragment) n=1 Tax=Spizella passerina TaxID=40210 RepID=A0A852JV59_SPIPA)

HSP 1 Score: 86.7 bits (213), Expect = 1.050e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   16 QSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            QSAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N++GL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:    1 QSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKSGLLGIFWKCARIGERKSSYVAVCCVVMAFSILFVQ 72          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: UPI0004F4621A (protein kish-A n=1 Tax=Aptenodytes forsteri TaxID=9233 RepID=UPI0004F4621A)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-20
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 GFVGLQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            G + ++SAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:   57 GALSVRSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFVQ 133          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: UPI00051F1130 (protein kish-A n=1 Tax=Egretta garzetta TaxID=188379 RepID=UPI00051F1130)

HSP 1 Score: 87.0 bits (214), Expect = 1.420e-20
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   13 LQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            L SAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N+TGL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:   24 LHSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKTGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFVQ 96          
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Match: A0A8D2QEQ4_ZONAL (Protein kish n=5 Tax=Passeriformes TaxID=9126 RepID=A0A8D2QEQ4_ZONAL)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   16 QSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLMAIFFRSSRIGERKSEFIAIACVAMAVYILFVK 246
            QSAIFNF SLLTV+LL ICTCAY+R   +L P    +D+N++GL+ IF++ +RIGERKS ++A+ CV MA  ILFV+
Sbjct:    1 QSAIFNFQSLLTVILLLICTCAYIR---SLAPSL--LDKNKSGLLGIFWKCARIGERKSPYVAVCCVVMAFSILFVQ 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90768.21039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010F725BA2.410e-2156.79protein kish-A isoform X1 n=1 Tax=Monodon monocero... [more]
A0A7K6KL64_9PASE3.680e-2159.74Protein kish (Fragment) n=4 Tax=Neognathae TaxID=8... [more]
A0A7K8THE4_9AVES3.680e-2159.74Protein kish (Fragment) n=5 Tax=Neognathae TaxID=8... [more]
A0A8B9FJ21_9PSIT6.480e-2158.97Protein kish n=2 Tax=Neognathae TaxID=8825 RepID=A... [more]
A0A4X1T6F5_PIG8.990e-2154.88Protein kish n=2 Tax=Boreoeutheria TaxID=1437010 R... [more]
UPI00188584EB9.500e-2155.70protein kish-A isoform X2 n=1 Tax=Peromyscus leuco... [more]
A0A852JV59_SPIPA1.050e-2058.44Protein kish (Fragment) n=1 Tax=Spizella passerina... [more]
UPI0004F4621A1.350e-2056.10protein kish-A n=1 Tax=Aptenodytes forsteri TaxID=... [more]
UPI00051F11301.420e-2058.97protein kish-A n=1 Tax=Egretta garzetta TaxID=1883... [more]
A0A8D2QEQ4_ZONAL1.500e-2058.44Protein kish n=5 Tax=Passeriformes TaxID=9126 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90768contigM-pyrifera_M_contig90768:462..713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score87.0
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog10160.XP_004641028.1
Preferred nameTMEM167A
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF1242)
EggNOG OGs35QW0@314146,3A879@33154,3BSJA@33208,3D9B2@33213,3JHRY@40674,48FXV@7711,49CTH@7742,4Q8XZ@9989,KOG3808@1,KOG3808@2759
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.75621-CDS-M-pyrifera_M_contig90768:461..7131622816819.75621-CDS-M-pyrifera_M_contig90768:461..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90768 462..713 -
1692278197.3135915-CDS-M-pyrifera_M_contig90768:461..7131692278197.3135915-CDS-M-pyrifera_M_contig90768:461..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90768 462..713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90768.21039.1prot_M-pyrifera_M_contig90768.21039.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90768 462..713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90768.21039.1

>prot_M-pyrifera_M_contig90768.21039.1 ID=prot_M-pyrifera_M_contig90768.21039.1|Name=mRNA_M-pyrifera_M_contig90768.21039.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
GFVGLQSAIFNFTSLLTVVLLFICTCAYLRRTTTLRPVFGWIDQNRTGLM
AIFFRSSRIGERKSEFIAIACVAMAVYILFVKG*
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mRNA from alignment at M-pyrifera_M_contig90768:462..713-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90768.21039.1 ID=mRNA_M-pyrifera_M_contig90768.21039.1|Name=mRNA_M-pyrifera_M_contig90768.21039.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig90768:462..713- (Macrocystis pyrifera P11B4 male)
GGTTTTGTTGGTTTGCAGAGCGCAATTTTCAACTTTACGAGCTTGTTGAC CGTTGTGTTGTTGTTCATTTGTACATGTGCCTACTTGCGAAGGACAACAA CGCTTCGCCCCGTGTTTGGATGGATTGATCAAAATAGAACCGGCTTAATG GCCATCTTCTTCCGTTCGAGTCGCATTGGAGAGCGAAAATCAGAATTCAT TGCAATCGCCTGTGTTGCTATGGCGGTCTATATCCTATTCGTGAAAGGAT GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90768:462..713-

>mRNA_M-pyrifera_M_contig90768.21039.1 ID=mRNA_M-pyrifera_M_contig90768.21039.1|Name=mRNA_M-pyrifera_M_contig90768.21039.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig90768:462..713- (Macrocystis pyrifera P11B4 male)
GGTTTTGTTGGTTTGCAGAGCGCAATTTTCAACTTTACGAGCTTGTTGAC
CGTTGTGTTGTTGTTCATTTGTACATGTGCCTACTTGCGAAGGACAACAA
CGCTTCGCCCCGTGTTTGGATGGATTGATCAAAATAGAACCGGCTTAATG
GCCATCTTCTTCCGTTCGAGTCGCATTGGAGAGCGAAAATCAGAATTCAT
TGCAATCGCCTGTGTTGCTATGGCGGTCTATATCCTATTCGTGAAAGGAT
GAGGTTTTGTTGGTTTGCAGAGCGCAATTTTCAACTTTACGAGCTTGTTG
ACCGTTGTGTTGTTGTTCATTTGTACATGTGCCTACTTGCGAAGGACAAC
AACGCTTCGCCCCGTGTTTGGATGGATTGATCAAAATAGAACCGGCTTAA
TGGCCATCTTCTTCCGTTCGAGTCGCATTGGAGAGCGAAAATCAGAATTC
ATTGCAATCGCCTGTGTTGCTATGGCGGTCTATATCCTATTCGTGAAAGG
ATGA
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