mRNA_M-pyrifera_M_contig90659.21018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90659.21018.1
Unique NamemRNA_M-pyrifera_M_contig90659.21018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90659.21018.1 vs. uniprot
Match: A0A523PPR4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PPR4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 7.190e-6
Identity = 59/202 (29.21%), Postives = 96/202 (47.52%), Query Frame = 1 
Query:    1 MSAIGRIFLVLNLILSALFVGWAAKVIKEEDSYRAQYQTAVADAEAAAEEAEEAQSALSAQLNTARAEEATVVSQRDDFEREVANLKEDLASERQRVAELESNVKTMTASLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARMTADTSRKGVEDELDQAQARIADLEMELTTAEKMVSRQSAQLATIVEEYNIDLSSI 606
            MS IGRIF+VLNL+LSA+F+G+A+  +     ++ Q++    + +   E  E     L+AQ+    +  +++  QRD F+ E+  LK D  +ER+R   L ++V  +  +L  +                    XXXXXXXX              +++L  A   I DLE++  T  K  +   AQL T+ E     L+ +
Sbjct:    1 MSPIGRIFIVLNLVLSAVFLGFASNNLASSQDFKGQFEDKRDEHDQYRETKEVELGDLTAQIAQLESSSSSLREQRDGFKAEMDRLKTDYETERRRNNTLNADVSAIKETLANYDETNRQNVQRLEQANSAVAEXXXXXXXXXXXXXXXXXXXXXXDEQLTAASKSIVDLEIDRETLRKANANLDAQLQTLAEATGTKLADL 202
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BLAST of mRNA_M-pyrifera_M_contig90659.21018.1 vs. uniprot
Match: A0A2D5ARZ1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ARZ1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.130e-5
Identity = 45/198 (22.73%), Postives = 88/198 (44.44%), Query Frame = 1 
Query:    1 MSAIGRIFLVLNLILSALFVGWAAKVIKEEDSYRAQYQTAVADAEAAAEEAEEAQSALSAQLNTARAEEATVVSQRDDFEREVANLKEDLASERQRVAELESNVKTMTASLEGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARMTADTSRKGVEDELDQAQARIADLEMELTTAEKMVSRQSAQLATIVEEYNID 594
            MS IGR+F+VLNL+L+A F+GWA+  +     Y+ Q +T  ++    A   +E  S L  ++     +      +RD  + +    + DLA+ ++    L +++  + ++L  +                            V A+  A+  R+  E+ L   + ++  L+   T  +  + RQ  Q+A ++EE  +D
Sbjct:    1 MSPIGRMFIVLNLVLAAAFLGWASNALSTVQDYKGQLETEKSEHNDTAAAKDEEISKLQIKMQNLEGDSGRFREERDLEKSQRERSEADLATAKRANETLSASLSKIESNLGDYKQLIEQFSSDKDNLAQLNAEATRAREDAVDAQQAAELQRRDAEEALLGVRGQVDVLQATNTDLQSKLKRQEVQIAILIEETGLD 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90659.21018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A523PPR4_9BACT7.190e-629.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5ARZ1_9BACT6.130e-522.73Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90659contigM-pyrifera_M_contig90659:180..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size606
Cds size606
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.4887686-CDS-M-pyrifera_M_contig90659:179..7851622816818.4887686-CDS-M-pyrifera_M_contig90659:179..785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90659 180..785 +
1692278196.5106297-CDS-M-pyrifera_M_contig90659:179..7851692278196.5106297-CDS-M-pyrifera_M_contig90659:179..785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90659 180..785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90659.21018.1prot_M-pyrifera_M_contig90659.21018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90659 180..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90659.21018.1

>prot_M-pyrifera_M_contig90659.21018.1 ID=prot_M-pyrifera_M_contig90659.21018.1|Name=mRNA_M-pyrifera_M_contig90659.21018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
MSAIGRIFLVLNLILSALFVGWAAKVIKEEDSYRAQYQTAVADAEAAAEE
AEEAQSALSAQLNTARAEEATVVSQRDDFEREVANLKEDLASERQRVAEL
ESNVKTMTASLEGFRSTIESMEASKDAAVADAREAREARDEAVAARMTAD
TSRKGVEDELDQAQARIADLEMELTTAEKMVSRQSAQLATIVEEYNIDLS
SI
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mRNA from alignment at M-pyrifera_M_contig90659:180..785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90659.21018.1 ID=mRNA_M-pyrifera_M_contig90659.21018.1|Name=mRNA_M-pyrifera_M_contig90659.21018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig90659:180..785+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCCATCGGACGCATCTTTCTGGTTCTGAACCTGATCCTCTCGGC
CCTGTTCGTCGGTTGGGCCGCGAAAGTCATCAAGGAAGAGGACAGCTACC
GCGCGCAGTACCAGACTGCGGTCGCCGACGCCGAGGCCGCTGCTGAAGAG
GCCGAGGAAGCGCAGAGCGCTCTCTCCGCCCAGCTGAACACCGCGCGCGC
CGAAGAGGCCACGGTCGTCAGCCAGCGTGACGACTTCGAGCGCGAGGTCG
CCAACCTCAAGGAAGACCTTGCCAGCGAGCGCCAGCGCGTCGCCGAGCTC
GAGTCGAACGTCAAGACGATGACGGCCAGCCTCGAGGGCTTCCGCTCCAC
GATCGAGAGCATGGAGGCGTCCAAGGACGCCGCCGTCGCCGACGCTCGTG
AGGCTCGCGAAGCCCGCGACGAGGCGGTCGCCGCCCGCATGACGGCCGAC
ACCTCCCGCAAGGGCGTGGAGGACGAGCTCGACCAGGCCCAGGCGCGCAT
CGCCGACCTCGAGATGGAGCTCACGACCGCCGAGAAGATGGTCTCGCGCC
AGAGCGCGCAGCTCGCGACGATCGTCGAGGAGTACAACATCGACCTGTCC
AGCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90659:180..785+

>mRNA_M-pyrifera_M_contig90659.21018.1 ID=mRNA_M-pyrifera_M_contig90659.21018.1|Name=mRNA_M-pyrifera_M_contig90659.21018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig90659:180..785+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCCATCGGACGCATCTTTCTGGTTCTGAACCTGATCCTCTCGGC
CCTGTTCGTCGGTTGGGCCGCGAAAGTCATCAAGGAAGAGGACAGCTACC
GCGCGCAGTACCAGACTGCGGTCGCCGACGCCGAGGCCGCTGCTGAAGAG
GCCGAGGAAGCGCAGAGCGCTCTCTCCGCCCAGCTGAACACCGCGCGCGC
CGAAGAGGCCACGGTCGTCAGCCAGCGTGACGACTTCGAGCGCGAGGTCG
CCAACCTCAAGGAAGACCTTGCCAGCGAGCGCCAGCGCGTCGCCGAGCTC
GAGTCGAACGTCAAGACGATGACGGCCAGCCTCGAGGGCTTCCGCTCCAC
GATCGAGAGCATGGAGGCGTCCAAGGACGCCGCCGTCGCCGACGCTCGTG
AGGCTCGCGAAGCCCGCGACGAGGCGGTCGCCGCCCGCATGACGGCCGAC
ACCTCCCGCAAGGGCGTGGAGGACGAGCTCGACCAGGCCCAGGCGCGCAT
CGCCGACCTCGAGATGGAGCTCACGACCGCCGAGAAGATGGTCTCGCGCC
AGAGCGCGCAGCTCGCGACGATCGTCGAGGAGTACAACATCGACCTGTCC
AGCATCATGAGCGCCATCGGACGCATCTTTCTGGTTCTGAACCTGATCCT
CTCGGCCCTGTTCGTCGGTTGGGCCGCGAAAGTCATCAAGGAAGAGGACA
GCTACCGCGCGCAGTACCAGACTGCGGTCGCCGACGCCGAGGCCGCTGCT
GAAGAGGCCGAGGAAGCGCAGAGCGCTCTCTCCGCCCAGCTGAACACCGC
GCGCGCCGAAGAGGCCACGGTCGTCAGCCAGCGTGACGACTTCGAGCGCG
AGGTCGCCAACCTCAAGGAAGACCTTGCCAGCGAGCGCCAGCGCGTCGCC
GAGCTCGAGTCGAACGTCAAGACGATGACGGCCAGCCTCGAGGGCTTCCG
CTCCACGATCGAGAGCATGGAGGCGTCCAAGGACGCCGCCGTCGCCGACG
CTCGTGAGGCTCGCGAAGCCCGCGACGAGGCGGTCGCCGCCCGCATGACG
GCCGACACCTCCCGCAAGGGCGTGGAGGACGAGCTCGACCAGGCCCAGGC
GCGCATCGCCGACCTCGAGATGGAGCTCACGACCGCCGAGAAGATGGTCT
CGCGCCAGAGCGCGCAGCTCGCGACGATCGTCGAGGAGTACAACATCGAC
CTGTCCAGCATC
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