mRNA_M-pyrifera_M_contig9065.21014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9065.21014.1
Unique NamemRNA_M-pyrifera_M_contig9065.21014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.400e-85
Identity = 199/311 (63.99%), Postives = 212/311 (68.17%), Query Frame = 1 
Query:    1 RPQDAHEFFNFVLNEMADTMVARNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQNALNXXXXXXXDPRKSSPWLKMSLFKGGFGGSAKNGPTLSGTEGTAGVDQSAAAAEAATGSVNGPASRARGQGNEXXXXXXXXXXXXXXXXXXXXXXXXXNAKSGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLYR 933
            R QDAHEFFNFVLNEMAD++VAR +            XXXXXXXXXXXXXXXXXXXXXX       XXXX    PR+SS W KMS FKG FG    NG                                       XXXXXXXX                 N ++ D A++S  ETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSV++CLRNFSSTETLT+KNKFFCE+C ALQEAEKKIRLKRLPRVLTLHLKRFKY ESL +FSKLSHRVVFPLELR PNMTD AGEADADGRLYR
Sbjct:  129 RQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PRRSSTWSKMSSFKGSFG----NGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAGVDGGGGNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTKKNKFFCETCYALQEAEKKIRLKRLPRVLTLHLKRFKYVESLENFSKLSHRVVFPLELRTPNMTDAAGEADADGRLYR 431
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.130e-60
Identity = 104/146 (71.23%), Postives = 122/146 (83.56%), Query Frame = 1 
Query:  493 KSGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            KSGD A+  +  TW+H +FQGVLTN+TKC+CCETV++RDEPF+DL LD+EQN SVT+CLRNFS  ETLT  NKFFCE+C ALQEAEK++ L+RLPRVLTLHLKRFKY E + +FSKLSHRVVFPLELR PNM   +  ADADG LY
Sbjct:  148 KSGDQAAPKT--TWIHDLFQGVLTNETKCICCETVTHRDEPFVDLPLDIEQNCSVTACLRNFSRMETLTGCNKFFCETCCALQEAEKRMCLRRLPRVLTLHLKRFKYMEQIQNFSKLSHRVVFPLELRMPNMARDSA-ADADGILY 290
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A0D6R2R0_ARACU (USP domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R2R0_ARACU)

HSP 1 Score: 185 bits (469), Expect = 2.700e-52
Identity = 84/134 (62.69%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:  529 TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            +WVH+IFQG LTN+T+CLCCET++ RDE F+DLSLD+EQNSS+TSCLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L +HLKRFKY E LG + KLS+RVVFP+E++  N TD A  +DA+  L+
Sbjct:  168 SWVHKIFQGTLTNETRCLCCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKIPPRILVIHLKRFKYIEQLGRYKKLSYRVVFPMEIKLCNTTDDAPGSDAEYSLF 301
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A1Y1HV22_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV22_KLENI)

HSP 1 Score: 184 bits (467), Expect = 1.060e-51
Identity = 89/146 (60.96%), Postives = 114/146 (78.08%), Query Frame = 1 
Query:  493 KSGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            KSG  A    A+TWVH IFQG++TN+T+CLCCET+++RDE F DLSLD+EQNSS+TSCLRNFSSTETL  +NKFFC+ C +LQEA+K++++K  P++L LHLKRFKY E LG   KL +RVVFPLELR  N  +    A+A+  L+
Sbjct:  175 KSG--AQGRQAKTWVHEIFQGLVTNETRCLCCETLTSRDETFFDLSLDIEQNSSITSCLRNFSSTETLNAENKFFCDKCCSLQEAQKRMKIKAAPQILALHLKRFKYIEQLGRHKKLMYRVVFPLELRLCNTVEGGDGAEAEYSLF 318
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A9RF40_PHYPA (Predicted protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A9RF40_PHYPA)

HSP 1 Score: 183 bits (465), Expect = 1.060e-51
Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 1 
Query:  529 TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+TSCLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY E LG + KLS+RVVFPLEL+  N TD A  ++A+  L+
Sbjct:  168 TWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAEYSLF 301
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A176W0E8_MARPO (USP domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W0E8_MARPO)

HSP 1 Score: 183 bits (465), Expect = 1.080e-51
Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 1 
Query:  529 TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+TSCLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY E LG + KLS+RVVFPLEL+  N TD A  ++A+  L+
Sbjct:  169 TWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAEYSLF 302
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A388KQF3_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQF3_CHABU)

HSP 1 Score: 187 bits (476), Expect = 1.990e-51
Identity = 89/134 (66.42%), Postives = 111/134 (82.84%), Query Frame = 1 
Query:  529 TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            TWVH IFQG LTN+TKCLCCETV+ RDE F+DLSLD+EQNSS+TSCLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY E LG + KLS+RVVFPLEL+  N TD A  ++A+  L+
Sbjct:  370 TWVHEIFQGTLTNETKCLCCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDRCCSLQEAQKRMKIKVPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAEYSLF 503
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: D8S7A6_SELML (USP domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S7A6_SELML)

HSP 1 Score: 182 bits (463), Expect = 1.990e-51
Identity = 87/145 (60.00%), Postives = 114/145 (78.62%), Query Frame = 1 
Query:  496 SGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            +G  A      TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+TSCLRNFSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY E LG + KLS+RVVFPLEL+  N TD A  ++++  L+
Sbjct:  154 NGTAADQDHPLTWVHKIFQGFLTNETRCLRCETITARDEKFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKTPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSESEYSLF 298
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A4P9XKD2_9FUNG (USP domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKD2_9FUNG)

HSP 1 Score: 182 bits (462), Expect = 2.020e-51
Identity = 89/148 (60.14%), Postives = 118/148 (79.73%), Query Frame = 1 
Query:  487 NAKSGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            +A  G+ A+   A TWVH++F+GVLTN+TKCL CETV++RDE F+DLS+D+E++SSVTSCLR FS++E L  KNKF+C++C  LQEAEK++++K+LPRVL LHLKRFKY E L  + KLS+RVVFP+ELR  N +D A + D   RLY
Sbjct:  138 DASKGEPAASQEAVTWVHQLFEGVLTNETKCLTCETVTSRDESFLDLSIDIERHSSVTSCLRQFSASEMLCHKNKFYCDTCCGLQEAEKRMKIKKLPRVLALHLKRFKYQERLQRYIKLSYRVVFPMELRLFNTSDAAEDPD---RLY 282
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BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Match: A0A7C8YLE0_OPUST (USP domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YLE0_OPUST)

HSP 1 Score: 174 bits (441), Expect = 6.200e-51
Identity = 82/134 (61.19%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:  529 TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAEKKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPAGEADADGRLY 930
            TWVH+ FQG+LTN+TKCL CETV+ RDE F DLSLD+EQNSS+TSCL+NFSSTETL   +KFFC+ C +LQEA+K++++K+ P +L +HLKRFKY E+LG + KLS+RVVFPLEL+  N  +   +AD++  L+
Sbjct:    5 TWVHKNFQGILTNETKCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNADDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIENLGRYKKLSYRVVFPLELKLTNTVE---DADSEYSLF 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9065.21014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ3_ECTSI1.400e-8563.99Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835Z200_9STRA1.130e-6071.23Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A0D6R2R0_ARACU2.700e-5262.69USP domain-containing protein n=1 Tax=Araucaria cu... [more]
A0A1Y1HV22_KLENI1.060e-5160.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]
A9RF40_PHYPA1.060e-5164.18Predicted protein n=5 Tax=Physcomitrium patens Tax... [more]
A0A176W0E8_MARPO1.080e-5164.18USP domain-containing protein n=2 Tax=Marchantia p... [more]
A0A388KQF3_CHABU1.990e-5166.42Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Char... [more]
D8S7A6_SELML1.990e-5160.00USP domain-containing protein n=4 Tax=Selaginella ... [more]
A0A4P9XKD2_9FUNG2.020e-5160.14USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7C8YLE0_OPUST6.200e-5161.19USP domain-containing protein (Fragment) n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9065contigM-pyrifera_M_contig9065:8005..9892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue6.6e-72
Seed eggNOG ortholog2880.D8LBJ3
Preferred nameUSP46
KEGG koko:K11842,ko:K11872
Hectar predicted targeting categoryother localisation
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1864@1,KOG1864@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons4
Model size936
Cds size936
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9065.21014.1prot_M-pyrifera_M_contig9065.21014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9065 8005..9892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.297087-CDS-M-pyrifera_M_contig9065:8004..82051622816818.297087-CDS-M-pyrifera_M_contig9065:8004..8205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 8005..8205 +
1692278196.3965595-CDS-M-pyrifera_M_contig9065:8004..82051692278196.3965595-CDS-M-pyrifera_M_contig9065:8004..8205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 8005..8205 +
1622816818.310827-CDS-M-pyrifera_M_contig9065:8298..86911622816818.310827-CDS-M-pyrifera_M_contig9065:8298..8691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 8299..8691 +
1692278196.4090261-CDS-M-pyrifera_M_contig9065:8298..86911692278196.4090261-CDS-M-pyrifera_M_contig9065:8298..8691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 8299..8691 +
1622816818.3248813-CDS-M-pyrifera_M_contig9065:9338..94851622816818.3248813-CDS-M-pyrifera_M_contig9065:9338..9485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 9339..9485 +
1692278196.4190888-CDS-M-pyrifera_M_contig9065:9338..94851692278196.4190888-CDS-M-pyrifera_M_contig9065:9338..9485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 9339..9485 +
1622816818.336027-CDS-M-pyrifera_M_contig9065:9697..98921622816818.336027-CDS-M-pyrifera_M_contig9065:9697..9892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 9698..9892 +
1692278196.4286315-CDS-M-pyrifera_M_contig9065:9697..98921692278196.4286315-CDS-M-pyrifera_M_contig9065:9697..9892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9065 9698..9892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9065.21014.1

>prot_M-pyrifera_M_contig9065.21014.1 ID=prot_M-pyrifera_M_contig9065.21014.1|Name=mRNA_M-pyrifera_M_contig9065.21014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=312bp
RPQDAHEFFNFVLNEMADTMVARNRRKKEEEAARLEQREHLQQNKQSSNN
SSQHNYHQNGVQNALNGQQQQQQDPRKSSPWLKMSLFKGGFGGSAKNGPT
LSGTEGTAGVDQSAAAAEAATGSVNGPASRARGQGNEASSAAASATNGGR
DGQAAAGSGGNGNAKSGDDASDSSAETWVHRIFQGVLTNQTKCLCCETVS
NRDEPFMDLSLDVEQNSSVTSCLRNFSSTETLTQKNKFFCESCNALQEAE
KKIRLKRLPRVLTLHLKRFKYFESLGSFSKLSHRVVFPLELRAPNMTDPA
GEADADGRLYRR
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mRNA from alignment at M-pyrifera_M_contig9065:8005..9892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9065.21014.1 ID=mRNA_M-pyrifera_M_contig9065.21014.1|Name=mRNA_M-pyrifera_M_contig9065.21014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1888bp|location=Sequence derived from alignment at M-pyrifera_M_contig9065:8005..9892+ (Macrocystis pyrifera P11B4 male)
CGCCCACAGGACGCCCACGAGTTCTTCAACTTCGTGCTGAACGAGATGGC
CGACACCATGGTGGCGAGGAACAGGCGGAAGAAGGAGGAGGAGGCCGCCC
GCCTCGAGCAGAGGGAACATCTCCAGCAGAACAAACAGAGCAGCAACAAC
AGCAGCCAACACAACTACCACCAGAACGGGGTTCAGAACGCTCTTAATGG
CGTTAGCAAGCACCAACACAACAACTCCAACTCGAACAACAACAACAACA
ACAACAGCTACCGTAACCAAAACAATCTCCAGCAGCAGCGGCAGCAGCAG
CAACAACAGCAAGACCCGCGAAAGTCCTCTCCCTGGTTAAAGATGTCTCT
ATTCAAGGGCGGCTTTGGAGGAAGTGCGAAGAACGGGCCTACGTTGTCGG
GGACGGAAGGAACGGCGGGAGTTGACCAATCAGCGGCGGCAGCAGAGGCA
GCAACAGGAAGCGTTAATGGCCCAGCAAGCCGTGCGAGGGGTCAGGGAAA
CGAGGCATCCTCAGCGGCGGCGTCGGCGACAAATGGAGGTCGAGATGGGC
AGGCGGCCGCGGGATCAGGCGGAAACGGCAACGCTAAGAGCGGAGACGAC
GCGTCTGATTCGTCCGCGGAAACGTGGGTGCACCGCATCTTCCAGGGGGT
GTTGACCAATCAGACCAAGTGCCTTTGCTGCGAGACGGTGGGTGGAGAGT
GGGGTGGGGTAGGAGCGCTAGAGCGTGTGGTGTTTCGAGGTTCGGCTTTT
CTAAGTTTTCAGTTGCTTGATTGAGCTTTCAGCTACTTCAAATCTCGCAG
TTGCTTGTGCGTTTAGCTGCCTGAGCTTTAAGCTGGTTGTTCTGTGTCTT
AGCGGTTTCGATTCTCGTCCGTGACCATTGGAGAGCTCCTCCGCGTTGTT
TTCGGATTCGCCGGGAAACGCCCCGTACTATCCGACTTGGTACGTCAACA
TCATCAGCGTCTCGACGAAAGTTGCACCTGATAAAATATAATGCGGAGTT
TCTACGCTGCTGTCGCACCGATGTTGGTTGTTGTTTTATGTCCGTGGTAA
GGGATTGTTTCATGCTGCTGCCCTTAAGATTATGTGCCTATATAGCGCAC
GATGGCCAGACAACGCCTCGCGAGGTTTTCGCTCTACCACTGCTGCACGC
ACCACGCCGTTCGCTGCTGCTTGCGCCACAGTTTGGGCAGCATCATTTTG
AACGGAGCTCTGGCCTATAGTTAAGAGTCGATTCGATATCAAATCATTTT
TTGTATGCGCGCCGGGGGGGGGGGCTGGCTGATTGTTTTTTTGCTCGTTT
GTTTTTTTCTGGCCACCCGAACGGAACCCATCAGGTAAGCAATCGAGACG
AGCCTTTCATGGACTTATCACTGGACGTGGAGCAGAACTCGTCGGTGACG
TCGTGCCTGAGGAACTTCAGCAGCACCGAGACCCTCACGCAGAAGAACAA
GTTTTTCTGCGAGAGCTGCAACGCGCTTCAGGTACGCACGTAGGTTCTCT
GTATCTCATCGGTTGTTATTTTGGTTATACGTTCGTTCTTGCTCGTGCTT
GCGTTGCGTGCTTTTCGTGCTTTGCTTGCTTTGCTTGCTTGTGGAGGGGG
GGGGGAACGGTTGGTCGGTGCGCACGCTACAGCATGTACCATCACCATCA
TCACCACTGCCACCGCCACCGCCGCCGCCGCCGCCGCCGCCAGGAAGCTG
AGAAGAAGATTCGACTGAAGCGCCTCCCGCGGGTCCTGACCCTGCACCTC
AAGCGCTTCAAGTACTTCGAGTCCCTGGGCAGCTTCTCCAAACTGTCGCA
CAGGGTGGTGTTCCCGCTTGAGCTCCGCGCGCCCAACATGACGGACCCTG
CCGGGGAGGCGGACGCCGACGGTCGGCTCTACAGGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9065:8005..9892+

>mRNA_M-pyrifera_M_contig9065.21014.1 ID=mRNA_M-pyrifera_M_contig9065.21014.1|Name=mRNA_M-pyrifera_M_contig9065.21014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1872bp|location=Sequence derived from alignment at M-pyrifera_M_contig9065:8005..9892+ (Macrocystis pyrifera P11B4 male)
CGCCCACAGGACGCCCACGAGTTCTTCAACTTCGTGCTGAACGAGATGGC
CGACACCATGGTGGCGAGGAACAGGCGGAAGAAGGAGGAGGAGGCCGCCC
GCCTCGAGCAGAGGGAACATCTCCAGCAGAACAAACAGAGCAGCAACAAC
AGCAGCCAACACAACTACCACCAGAACGGGGTTCAGAACGCTCTTAATGG
CCGCCCACAGGACGCCCACGAGTTCTTCAACTTCGTGCTGAACGAGATGG
CCGACACCATGGTGGCGAGGAACAGGCGGAAGAAGGAGGAGGAGGCCGCC
CGCCTCGAGCAGAGGGAACATCTCCAGCAGAACAAACAGAGCAGCAACAA
CAGCAGCCAACACAACTACCACCAGAACGGGGTTCAGAACGCTCTTAATG
GCCAGCAGCAACAACAGCAAGACCCGCGAAAGTCCTCTCCCTGGTTAAAG
ATGTCTCTATTCAAGGGCGGCTTTGGAGGAAGTGCGAAGAACGGGCCTAC
GTTGTCGGGGACGGAAGGAACGGCGGGAGTTGACCAATCAGCGGCGGCAG
CAGAGGCAGCAACAGGAAGCGTTAATGGCCCAGCAAGCCGTGCGAGGGGT
CAGGGAAACGAGGCATCCTCAGCGGCGGCGTCGGCGACAAATGGAGGTCG
AGATGGGCAGGCGGCCGCGGGATCAGGCGGAAACGGCAACGCTAAGAGCG
GAGACGACGCGTCTGATTCGTCCGCGGAAACGTGGGTGCACCGCATCTTC
CAGGGGGTGTTGACCAATCAGACCAAGTGCCTTTGCTGCGAGACGCAGCA
GCAACAACAGCAAGACCCGCGAAAGTCCTCTCCCTGGTTAAAGATGTCTC
TATTCAAGGGCGGCTTTGGAGGAAGTGCGAAGAACGGGCCTACGTTGTCG
GGGACGGAAGGAACGGCGGGAGTTGACCAATCAGCGGCGGCAGCAGAGGC
AGCAACAGGAAGCGTTAATGGCCCAGCAAGCCGTGCGAGGGGTCAGGGAA
ACGAGGCATCCTCAGCGGCGGCGTCGGCGACAAATGGAGGTCGAGATGGG
CAGGCGGCCGCGGGATCAGGCGGAAACGGCAACGCTAAGAGCGGAGACGA
CGCGTCTGATTCGTCCGCGGAAACGTGGGTGCACCGCATCTTCCAGGGGG
TGTTGACCAATCAGACCAAGTGCCTTTGCTGCGAGACGGTAAGCAATCGA
GACGAGCCTTTCATGGACTTATCACTGGACGTGGAGCAGAACTCGTCGGT
GACGTCGTGCCTGAGGAACTTCAGCAGCACCGAGACCCTCACGCAGAAGA
ACAAGTTTTTCTGCGAGAGCTGCAACGCGCTTCAGGTAAGCAATCGAGAC
GAGCCTTTCATGGACTTATCACTGGACGTGGAGCAGAACTCGTCGGTGAC
GTCGTGCCTGAGGAACTTCAGCAGCACCGAGACCCTCACGCAGAAGAACA
AGTTTTTCTGCGAGAGCTGCAACGCGCTTCAGGAAGCTGAGAAGAAGATT
CGACTGAAGCGCCTCCCGCGGGTCCTGACCCTGCACCTCAAGCGCTTCAA
GTACTTCGAGTCCCTGGGCAGCTTCTCCAAACTGTCGCACAGGGTGGTGT
TCCCGCTTGAGCTCCGCGCGCCCAACATGACGGACCCTGCCGGGGAGGCG
GACGCCGACGGTCGGCTCTACAGGCGAGAAGCTGAGAAGAAGATTCGACT
GAAGCGCCTCCCGCGGGTCCTGACCCTGCACCTCAAGCGCTTCAAGTACT
TCGAGTCCCTGGGCAGCTTCTCCAAACTGTCGCACAGGGTGGTGTTCCCG
CTTGAGCTCCGCGCGCCCAACATGACGGACCCTGCCGGGGAGGCGGACGC
CGACGGTCGGCTCTACAGGCGA
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