mRNA_M-pyrifera_M_contig9063.21012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9063.21012.1
Unique NamemRNA_M-pyrifera_M_contig9063.21012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9063.21012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9063contigM-pyrifera_M_contig9063:5043..5837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size288
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9063.21012.1prot_M-pyrifera_M_contig9063.21012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9063 5043..5837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.2105927-CDS-M-pyrifera_M_contig9063:5042..51721622816818.2105927-CDS-M-pyrifera_M_contig9063:5042..5172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5043..5172 -
1692278196.339114-CDS-M-pyrifera_M_contig9063:5042..51721692278196.339114-CDS-M-pyrifera_M_contig9063:5042..5172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5043..5172 -
1622816818.2213411-CDS-M-pyrifera_M_contig9063:5192..52251622816818.2213411-CDS-M-pyrifera_M_contig9063:5192..5225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5193..5225 -
1692278196.3573196-CDS-M-pyrifera_M_contig9063:5192..52251692278196.3573196-CDS-M-pyrifera_M_contig9063:5192..5225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5193..5225 -
1622816818.2318516-CDS-M-pyrifera_M_contig9063:5712..58371622816818.2318516-CDS-M-pyrifera_M_contig9063:5712..5837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5713..5837 -
1692278196.3692944-CDS-M-pyrifera_M_contig9063:5712..58371692278196.3692944-CDS-M-pyrifera_M_contig9063:5712..5837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9063 5713..5837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9063.21012.1

>prot_M-pyrifera_M_contig9063.21012.1 ID=prot_M-pyrifera_M_contig9063.21012.1|Name=mRNA_M-pyrifera_M_contig9063.21012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MDILRYARANGCPWNVLTCAYAAAAGRLETLAWAREEQGCGCLPPLSLLR
SLLNEATCAFAAAGGHLEVLKWARDRGCPWGEETCASAARGGRLEV
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mRNA from alignment at M-pyrifera_M_contig9063:5043..5837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9063.21012.1 ID=mRNA_M-pyrifera_M_contig9063.21012.1|Name=mRNA_M-pyrifera_M_contig9063.21012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig9063:5043..5837- (Macrocystis pyrifera P11B4 male)
ATGGACATCCTGCGGTACGCTCGCGCGAACGGCTGCCCGTGGAACGTCCT
GACGTGTGCCTACGCTGCCGCGGCCGGGCGCCTGGAGACTCTGGCCTGGG
CTAGGGAGGAGCAGGGCTGCGGCTGGTGAGAATGTTACACTATTAATAGT
CCCCCGCCCTGAACACGTTCGTCTTTTTCCCTCAGGATTCGGGGTGCACC
TACCGTACCTTTCAACTGTTTTCTGCGACTCCTGTCTTGAGGATCTCTTA
TTCCCCGATGCCTGCAGTAACCTGTCTTATTTTGTTTTTCTACTTCCTGG
CCGTTCGCACCCCACTGCTCTGTTCTTTTCCCTCCCTCCCTCCCTCCCTC
CGATGCGTTGCACGATAGAGGTAGCACATTTCCGCTAAAATGTTTTCTGA
ATGACGGGGCTCCTCAAGCCGAAACCGTCGCAATACAATCATCATGTTCT
GGAAAATGACGTTTTAGTATACTTGGGCCATGAGATTATACTCACCGAGG
TGCAATTTTTATTTCTTGCTGAAGTCAGTTCCAGGGTGGGGTGTGGAGAG
CTCAAGCGAGGAAGGAGCCTCAGATTTTTTTTTTTGGGGGGTGAATCTCT
ATCGTAGAACAGCCTCCCCCCCCTATCCCTCCTTCGCTCTCTGTTGTGCT
TGAACGGTACCACAGGAACGAGGCAACCTGTGCCTTTGCAGCGGCTGGGG
GACACCTGGAAGTCCTCAAGTGGGCCAGGGACAGAGGGTGTCCATGGGGA
GAGGAGACGTGCGCCAGTGCTGCTAGGGGCGGGAGGCTCGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9063:5043..5837-

>mRNA_M-pyrifera_M_contig9063.21012.1 ID=mRNA_M-pyrifera_M_contig9063.21012.1|Name=mRNA_M-pyrifera_M_contig9063.21012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig9063:5043..5837- (Macrocystis pyrifera P11B4 male)
ATGGACATCCTGCGGTACGCTCGCGCGAACGGCTGCCCGTGGAACGTCCT
GACGTGTGCCTACGCTGCCGCGGCCGGGCGCCTGGAGACTCTGGCCTGGG
CTAGGGAGGAGCAGGGCTGCGGCTGATGGACATCCTGCGGTACGCTCGCG
CGAACGGCTGCCCGTGGAACGTCCTGACGTGTGCCTACGCTGCCGCGGCC
GGGCGCCTGGAGACTCTGGCCTGGGCTAGGGAGGAGCAGGGCTGCGGCTG
CCTCCCCCCCCTATCCCTCCTTCGCTCTCTGTTCCTCCCCCCCCTATCCC
TCCTTCGCTCTCTGTTGAACGAGGCAACCTGTGCCTTTGCAGCGGCTGGG
GGACACCTGGAAGTCCTCAAGTGGGCCAGGGACAGAGGGTGTCCATGGGG
AGAGGAGACGTGCGCCAGTGCTGCTAGGGGCGGGAGGCTCGAGGTGGAAC
GAGGCAACCTGTGCCTTTGCAGCGGCTGGGGGACACCTGGAAGTCCTCAA
GTGGGCCAGGGACAGAGGGTGTCCATGGGGAGAGGAGACGTGCGCCAGTG
CTGCTAGGGGCGGGAGGCTCGAGGTG
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