mRNA_M-pyrifera_M_contig90586.21007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90586.21007.1
Unique NamemRNA_M-pyrifera_M_contig90586.21007.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90586.21007.1 vs. uniprot
Match: UPI001E399D76 (trypsin-like peptidase domain-containing protein n=1 Tax=Stieleria sp. JC731 TaxID=2894195 RepID=UPI001E399D76)

HSP 1 Score: 277 bits (708), Expect = 3.020e-87
Identity = 138/190 (72.63%), Postives = 170/190 (89.47%), Query Frame = 1 
Query:    4 AQNLSQRRTWTDVSGQHSIDAQMVEINETAVKLNTGKRAVVLQRNKLSKADRGYLEACDILRQSSDQAERVASQLETDNLRNASLMAALEAIGKSSPSGFVSDFYLGGLKPVQTRKEVEIKEAVRINQRAIVAIKKVQQFFPGVHAQTLASVYNNQAVVAARNGSAEGFANFLKLSGEATPGTLSFATHH 573
            +QNLSQRRTW DVSG++SIDA M + ++++VKL+TG+R V L+ N+LS ADR Y++ C+++RQS+DQA ++ +QLETDNLR+A++MAALE+I KS P G VSDFYLGGLKPVQTRKE+EIKE++RINQ+AI AIK + Q FPGVH++TLASVYNNQAVVAARNGSAEGFANFLKLSGEATPGTLSFATHH
Sbjct:   44 SQNLSQRRTWADVSGRYSIDANMRDFDDSSVKLDTGERTVTLKINRLSVADREYVKVCNVIRQSADQARQIKAQLETDNLRDATVMAALESISKSLPEGIVSDFYLGGLKPVQTRKELEIKESIRINQKAIAAIKNIHQHFPGVHSRTLASVYNNQAVVAARNGSAEGFANFLKLSGEATPGTLSFATHH 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90586.21007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E399D763.020e-8772.63trypsin-like peptidase domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90586contigM-pyrifera_M_contig90586:216..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.0344734-CDS-M-pyrifera_M_contig90586:215..7881622816818.0344734-CDS-M-pyrifera_M_contig90586:215..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90586 216..788 +
1692278196.2618032-CDS-M-pyrifera_M_contig90586:215..7881692278196.2618032-CDS-M-pyrifera_M_contig90586:215..788Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90586 216..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90586.21007.1prot_M-pyrifera_M_contig90586.21007.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90586 216..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90586.21007.1

>prot_M-pyrifera_M_contig90586.21007.1 ID=prot_M-pyrifera_M_contig90586.21007.1|Name=mRNA_M-pyrifera_M_contig90586.21007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
SAQNLSQRRTWTDVSGQHSIDAQMVEINETAVKLNTGKRAVVLQRNKLSK
ADRGYLEACDILRQSSDQAERVASQLETDNLRNASLMAALEAIGKSSPSG
FVSDFYLGGLKPVQTRKEVEIKEAVRINQRAIVAIKKVQQFFPGVHAQTL
ASVYNNQAVVAARNGSAEGFANFLKLSGEATPGTLSFATHH
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mRNA from alignment at M-pyrifera_M_contig90586:216..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90586.21007.1 ID=mRNA_M-pyrifera_M_contig90586.21007.1|Name=mRNA_M-pyrifera_M_contig90586.21007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig90586:216..788+ (Macrocystis pyrifera P11B4 male)
TCGGCGCAGAATCTGTCTCAGCGCCGGACCTGGACCGATGTCAGCGGTCA
GCACTCGATTGACGCTCAGATGGTCGAAATCAACGAAACCGCCGTCAAGC
TCAACACGGGCAAACGAGCTGTCGTGCTGCAAAGAAACAAGCTCAGCAAA
GCCGACCGTGGGTACCTCGAAGCTTGCGACATTCTTCGTCAGTCCTCTGA
TCAAGCTGAACGCGTTGCTTCGCAACTCGAAACGGATAATTTGCGAAACG
CTTCCTTGATGGCTGCCCTGGAAGCGATCGGAAAGTCGTCTCCCAGTGGG
TTTGTTTCGGACTTCTATCTCGGTGGCCTGAAACCGGTGCAGACTCGAAA
AGAAGTGGAGATCAAGGAAGCGGTTCGCATCAACCAGCGAGCGATTGTGG
CGATCAAGAAAGTTCAGCAGTTTTTTCCTGGCGTTCACGCCCAAACGCTC
GCTTCGGTCTACAACAACCAAGCTGTCGTCGCTGCTCGAAATGGCAGCGC
TGAAGGCTTCGCGAATTTTCTCAAGCTGTCCGGCGAAGCTACGCCGGGAA
CACTGTCGTTTGCGACACACCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90586:216..788+

>mRNA_M-pyrifera_M_contig90586.21007.1 ID=mRNA_M-pyrifera_M_contig90586.21007.1|Name=mRNA_M-pyrifera_M_contig90586.21007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig90586:216..788+ (Macrocystis pyrifera P11B4 male)
TCGGCGCAGAATCTGTCTCAGCGCCGGACCTGGACCGATGTCAGCGGTCA
GCACTCGATTGACGCTCAGATGGTCGAAATCAACGAAACCGCCGTCAAGC
TCAACACGGGCAAACGAGCTGTCGTGCTGCAAAGAAACAAGCTCAGCAAA
GCCGACCGTGGGTACCTCGAAGCTTGCGACATTCTTCGTCAGTCCTCTGA
TCAAGCTGAACGCGTTGCTTCGCAACTCGAAACGGATAATTTGCGAAACG
CTTCCTTGATGGCTGCCCTGGAAGCGATCGGAAAGTCGTCTCCCAGTGGG
TTTGTTTCGGACTTCTATCTCGGTGGCCTGAAACCGGTGCAGACTCGAAA
AGAAGTGGAGATCAAGGAAGCGGTTCGCATCAACCAGCGAGCGATTGTGG
CGATCAAGAAAGTTCAGCAGTTTTTTCCTGGCGTTCACGCCCAAACGCTC
GCTTCGGTCTACAACAACCAAGCTGTCGTCGCTGCTCGAAATGGCAGCGC
TGAAGGCTTCGCGAATTTTCTCAAGCTGTCCGGCGAAGCTACGCCGGGAA
CACTGTCGTTTGCGACACACCACTCGGCGCAGAATCTGTCTCAGCGCCGG
ACCTGGACCGATGTCAGCGGTCAGCACTCGATTGACGCTCAGATGGTCGA
AATCAACGAAACCGCCGTCAAGCTCAACACGGGCAAACGAGCTGTCGTGC
TGCAAAGAAACAAGCTCAGCAAAGCCGACCGTGGGTACCTCGAAGCTTGC
GACATTCTTCGTCAGTCCTCTGATCAAGCTGAACGCGTTGCTTCGCAACT
CGAAACGGATAATTTGCGAAACGCTTCCTTGATGGCTGCCCTGGAAGCGA
TCGGAAAGTCGTCTCCCAGTGGGTTTGTTTCGGACTTCTATCTCGGTGGC
CTGAAACCGGTGCAGACTCGAAAAGAAGTGGAGATCAAGGAAGCGGTTCG
CATCAACCAGCGAGCGATTGTGGCGATCAAGAAAGTTCAGCAGTTTTTTC
CTGGCGTTCACGCCCAAACGCTCGCTTCGGTCTACAACAACCAAGCTGTC
GTCGCTGCTCGAAATGGCAGCGCTGAAGGCTTCGCGAATTTTCTCAAGCT
GTCCGGCGAAGCTACGCCGGGAACACTGTCGTTTGCGACACACCAC
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